Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0008159.1

Orthogroup ID

OG0007040

Physical Location & Seq

Genomic Coordinates Forward (+)

8964 .. 12258

Gene Structure 3295 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0008159.1_g000004.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 936 bp

atgtctggtctatttttcagttctattgtgtcttatagactatttgaagcactggtggtgatgatctccgacattgttggtgcttgtctcactaatacacagattgtggcgatgaagtgtttcaacagcaaaattgaagagagggaagaaaccgtgaggcacgcagttcacattgttggtaagactgagaggattcttgagattgttaacaagggaattcctccggacttggatactcaccaaatggggtgcattgatgaatggcccctctcggcccagcctccctcccttctgcgtctccgctgcccctgcagcctccttggaccgccgcacaccaccgctgcccctgcaacacttccggtcatccgacagccaccaaaactcccagttttttgcaactttctgcagcagccttcgacctaccctcctgcaatactcggtagcaaccaaagtcctcggctatcatcaccaccgagcccacctagtcctctatattcgacctacatcaacttcaagttcaagaatcacgtgttcaagctccaaacaaacaaccaccacgcccaccactccacagtcgatgtcggcgtccaccgccgccgctctgtcccaccgtcggaccaccagaggatgacgccatctaattccacgatcccaacccctctaggcttcgccggttttgttcgtcagatgtccgggaagctctccacgccggaatcggatagcagttttcagtcccagatagcagtcttcagtccatcgtcgattctttcagaaggtcaaccccggcctcgcagagcttctaagcgacgaggaccattggcttggcgtcgagcctggccgcggagagcacgacgacgagtttcggcgccgcgatggcgagagcaagcgtcgtgggcgacctgctggagggatggagggagggagagagaaatctga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

311

Amino Acids

34.9

Weight (kDa)

10.46

Isoelectric Point (pI)

71.21

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007040)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G02650
fragaria_vesca	FvH4_1g17520 FvH4_1g17520 FvH4_3g26860 FvH4_3g26871
malus_domestica	MD06G1060600.v1.1
prunus_persica	Prupe.5G071600_v2.0.a1
pyrus_communis	pycom06g05050
rosa_chinensis	RchiOBHm_Chr7g0202971
rosa_laevigata	RLG00000003560 RLG00000003562
rosa_multiflora	Rmu_co8016408.1_g000001 Rmu_co8369993.1_g000001 Rmu_sc0007263.1_g000004 Rmu_sc0008159.1_g000002 Rmu_sc0008159.1_g000004 Rmu_sc0013377.1_g000003
rosa_roxburghii	Rroxscaffold_3G00254130 Rroxscaffold_3G00254150
rosa_rugosa	Rorug07G0074000
rosa_samantha	Rh7AG202200 Rh7BG202300 Rh7CG213300 Rh7DG209300
rosa_wichuraiana	Rw7G017680

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	908
AccB1I	GGYRCC	1 cut(s)	865
AccBSI	CCGCTC	1 cut(s)	600
AccII	CGCG	2 cut(s)	841, 871
AccIII	TCCGGA	1 cut(s)	223
AclWI	GGATC	1 cut(s)	643
AcoI	YGGCCR	1 cut(s)	836
AcsI	RAATTY	1 cut(s)	216
AcuI	CTGAAG	1 cut(s)	733
AcvI	CACGTG	1 cut(s)	529
AcyI	GRCGYC	4 cut(s)	585, 632, 826, 866
AfiI	CCNNNNNNNGG	3 cut(s)	613, 840, 906
AflIII	ACRYGT	1 cut(s)	528
AgsI	TTSAA	6 cut(s)	47, 124, 137, 514, 520, 535
AjnI	CCWGG	1 cut(s)	833
AluBI	AGCT	3 cut(s)	538, 700, 797
AluI	AGCT	3 cut(s)	538, 700, 797
Alw21I	GWGCWC	1 cut(s)	850
Alw26I	GTCTC	2 cut(s)	92, 302
AlwI	GGATC	1 cut(s)	643
Aor13HI	TCCGGA	1 cut(s)	223
AoxI	GGCC	4 cut(s)	263, 273, 785, 836
ApeKI	GCWGC	5 cut(s)	303, 312, 341, 406, 409
ApoI	RAATTY	1 cut(s)	216
Asp700I	GAANNNNTTC	1 cut(s)	119
AspLEI	GCGC	1 cut(s)	868
AspS9I	GGNCC	5 cut(s)	264, 274, 323, 616, 812
AsuC2I	CCSGG	2 cut(s)	694, 784
AsuHPI	GGTGA	3 cut(s)	70, 230, 459
AvaII	GGWCC	3 cut(s)	323, 616, 812
BanI	GGYRCC	1 cut(s)	865
BanII	GRGCYC	1 cut(s)	479
BbrPI	CACGTG	1 cut(s)	529
BbsI	GAAGAC	1 cut(s)	739
Bbv12I	GWGCWC	1 cut(s)	850
BbvI	GCAGC	5 cut(s)	290, 324, 328, 418, 421
BccI	CCATC	4 cut(s)	643, 763, 867, 905
BciT130I	CCWGG	1 cut(s)	835
BciVI	GTATCC	1 cut(s)	226
BcnI	CCSGG	2 cut(s)	694, 784
BcoDI	GTCTC	2 cut(s)	92, 302
BfaI	CTAG	2 cut(s)	483, 662
BfmI	CTRYAG	2 cut(s)	310, 404
BfoI	RGCGCY	1 cut(s)	869
BfuAI	ACCTGC	1 cut(s)	908
BfuI	GTATCC	1 cut(s)	226
BglI	GCCNNNNNGGC	1 cut(s)	874
Bme1390I	CCNGG	3 cut(s)	694, 784, 835
Bme18I	GGWCC	3 cut(s)	323, 616, 812
BmgT120I	GGNCC	5 cut(s)	264, 274, 323, 616, 812
BmiI	GGNNCC	2 cut(s)	266, 867
BmrFI	CCNGG	3 cut(s)	694, 784, 835
BmrI	ACTGGG	1 cut(s)	380
BmuI	ACTGGG	1 cut(s)	380
BpiI	GAAGAC	1 cut(s)	739
BpmI	CTGGAG	1 cut(s)	925
BpuEI	CTTGAG	1 cut(s)	218
BpuMI	CCSGG	2 cut(s)	694, 784
BsaAI	YACGTR	1 cut(s)	529
BsaHI	GRCGYC	4 cut(s)	585, 632, 826, 866
BsaJI	CCNNGG	4 cut(s)	319, 455, 782, 839
BsaWI	WCCGGW	2 cut(s)	223, 358
BsaXI	ACNNNNNCTCC	4 cut(s)	366, 396, 409, 439
Bsc4I	CCNNNNNNNGG	3 cut(s)	613, 840, 906
Bse118I	RCCGGY	1 cut(s)	671
Bse1I	ACTGG	2 cut(s)	57, 386
BseAI	TCCGGA	1 cut(s)	223
BseBI	CCWGG	1 cut(s)	835
BseDI	CCNNGG	4 cut(s)	319, 455, 782, 839
BseGI	GGATG	3 cut(s)	363, 633, 916
BseLI	CCNNNNNNNGG	3 cut(s)	613, 840, 906
BseMII	CTCAG	1 cut(s)	177
BseNI	ACTGG	2 cut(s)	57, 386
BseXI	GCAGC	5 cut(s)	290, 324, 328, 418, 421
BseYI	CCCAGC	1 cut(s)	276
Bsh1236I	CGCG	2 cut(s)	841, 871
BshFI	GGCC	4 cut(s)	265, 275, 787, 838
BshNI	GGYRCC	1 cut(s)	865
BsiHKAI	GWGCWC	1 cut(s)	850
BsiSI	CCGG	6 cut(s)	224, 359, 672, 693, 710, 784
BslFI	GGGAC	2 cut(s)	590, 718
BslI	CCNNNNNNNGG	3 cut(s)	613, 840, 906
BsmAI	GTCTC	2 cut(s)	92, 302
BsmBI	CGTCTC	1 cut(s)	302
BsmFI	GGGAC	2 cut(s)	590, 718
BsnI	GGCC	4 cut(s)	265, 275, 787, 838
Bsp1286I	GDGCHC	2 cut(s)	479, 850
Bsp13I	TCCGGA	1 cut(s)	223
Bsp143I	GATC	2 cut(s)	63, 648
BspANI	GGCC	4 cut(s)	265, 275, 787, 838
BspCNI	CTCAG	1 cut(s)	178
BspEI	TCCGGA	1 cut(s)	223
BspFNI	CGCG	2 cut(s)	841, 871
BspLI	GGNNCC	2 cut(s)	266, 867
BspMAI	CTGCAG	2 cut(s)	314, 408
BspMI	ACCTGC	1 cut(s)	908
BspPI	GGATC	1 cut(s)	643
BspT107I	GGYRCC	1 cut(s)	865
BsrBI	CCGCTC	1 cut(s)	600
BsrFI	RCCGGY	1 cut(s)	671
BsrI	ACTGG	2 cut(s)	57, 386
BssAI	RCCGGY	1 cut(s)	671
BssECI	CCNNGG	4 cut(s)	319, 455, 782, 839
BssMI	GATC	2 cut(s)	63, 648
BssNI	GRCGYC	4 cut(s)	585, 632, 826, 866
BssT1I	CCWWGG	1 cut(s)	319
Bst2UI	CCWGG	1 cut(s)	835
Bst4CI	ACNGT	3 cut(s)	154, 574, 612
Bst6I	CTCTTC	1 cut(s)	132
BstACI	GRCGYC	4 cut(s)	585, 632, 826, 866
BstBAI	YACGTR	1 cut(s)	529
BstC8I	GCNNGC	2 cut(s)	162, 885
BstDEI	CTNAG	2 cut(s)	186, 801
BstDSI	CCRYGG	1 cut(s)	839
BstENI	CCTNNNNNAGG	1 cut(s)	904
BstF5I	GGATG	3 cut(s)	363, 633, 916
BstFNI	CGCG	2 cut(s)	841, 871
BstH2I	RGCGCY	1 cut(s)	869
BstHHI	GCGC	1 cut(s)	868
BstKTI	GATC	2 cut(s)	66, 651
BstMAI	GTCTC	2 cut(s)	92, 302
BstMBI	GATC	2 cut(s)	63, 648
BstMWI	GCNNNNNNNGC	7 cut(s)	309, 312, 347, 591, 706, 874, 893
BstNI	CCWGG	1 cut(s)	835
BstSCI	CCNGG	3 cut(s)	692, 782, 833
BstSFI	CTRYAG	2 cut(s)	310, 404
BstUI	CGCG	2 cut(s)	841, 871
BstV1I	GCAGC	5 cut(s)	290, 324, 328, 418, 421
BstV2I	GAAGAC	1 cut(s)	739
BstXI	CCANNNNNNTGG	1 cut(s)	822
BsuI	GTATCC	1 cut(s)	226
BsuRI	GGCC	4 cut(s)	265, 275, 787, 838
BtgI	CCRYGG	1 cut(s)	839
BtgZI	GCGATG	2 cut(s)	125, 886
BtsCI	GGATG	3 cut(s)	363, 633, 916
BtsIMutI	CAGTG	1 cut(s)	50
BveI	ACCTGC	1 cut(s)	908
Cac8I	GCNNGC	2 cut(s)	162, 885
CfoI	GCGC	1 cut(s)	868
Cfr10I	RCCGGY	1 cut(s)	671
Cfr13I	GGNCC	5 cut(s)	264, 274, 323, 616, 812
Cfr42I	CCGCGG	1 cut(s)	842
CseI	GACGC	5 cut(s)	284, 574, 640, 815, 876
CspCI	CAANNNNNGTGG	2 cut(s)	872, 907
DdeI	CTNAG	2 cut(s)	186, 801
DinI	GGCGCC	1 cut(s)	867
DpnI	GATC	2 cut(s)	65, 650
DpnII	GATC	2 cut(s)	63, 648
EaeI	YGGCCR	1 cut(s)	836
Eam1104I	CTCTTC	1 cut(s)	132
EarI	CTCTTC	1 cut(s)	132
Eco130I	CCWWGG	1 cut(s)	319
Eco24I	GRGCYC	1 cut(s)	479
Eco47I	GGWCC	3 cut(s)	323, 616, 812
Eco57I	CTGAAG	1 cut(s)	733
Eco72I	CACGTG	1 cut(s)	529
EcoNI	CCTNNNNNAGG	1 cut(s)	904
EcoRI	GAATTC	1 cut(s)	216
EcoRII	CCWGG	1 cut(s)	833
EcoT14I	CCWWGG	1 cut(s)	319
EcoT38I	GRGCYC	1 cut(s)	479
EgeI	GGCGCC	1 cut(s)	867
EheI	GGCGCC	1 cut(s)	867
ErhI	CCWWGG	1 cut(s)	319
Esp3I	CGTCTC	1 cut(s)	302
FaiI	YATR	2 cut(s)	36, 493
FaqI	GGGAC	2 cut(s)	590, 718
FokI	GGATG	3 cut(s)	350, 640, 923
FriOI	GRGCYC	1 cut(s)	479
FspBI	CTAG	2 cut(s)	483, 662
GlaI	GCGC	1 cut(s)	867
GsaI	CCCAGC	1 cut(s)	280
GsuI	CTGGAG	1 cut(s)	925
HaeII	RGCGCY	1 cut(s)	869
HaeIII	GGCC	4 cut(s)	265, 275, 787, 838
HapII	CCGG	6 cut(s)	224, 359, 672, 693, 710, 784
HgaI	GACGC	5 cut(s)	284, 574, 640, 815, 876
HhaI	GCGC	1 cut(s)	868
Hin1I	GRCGYC	4 cut(s)	585, 632, 826, 866
Hin6I	GCGC	1 cut(s)	866
HinP1I	GCGC	1 cut(s)	866
HincII	GTYRAC	2 cut(s)	208, 779
HindII	GTYRAC	2 cut(s)	208, 779
HinfI	GANTC	4 cut(s)	193, 523, 713, 763
HpaI	GTTAAC	1 cut(s)	208
HpaII	CCGG	6 cut(s)	224, 359, 672, 693, 710, 784
HphI	GGTGA	3 cut(s)	70, 230, 459
Hpy166II	GTNNAC	4 cut(s)	169, 208, 589, 779
Hpy188I	TCNGA	7 cut(s)	70, 368, 616, 687, 718, 772, 935
Hpy188III	TCNNGA	3 cut(s)	197, 224, 520
Hpy8I	GTNNAC	4 cut(s)	169, 208, 589, 779
Hpy99I	CGWCG	7 cut(s)	616, 763, 810, 831, 855, 858, 892
HpyAV	CCTTC	3 cut(s)	299, 423, 767
HpyCH4III	ACNGT	3 cut(s)	154, 574, 612
HpyCH4IV	ACGT	1 cut(s)	528
HpyCH4V	TGCA	6 cut(s)	252, 312, 350, 396, 406, 431
HpyF10VI	GCNNNNNNNGC	7 cut(s)	309, 312, 347, 591, 706, 874, 893
HpyF3I	CTNAG	2 cut(s)	186, 801
HpySE526I	ACGT	1 cut(s)	528
Hsp92I	GRCGYC	4 cut(s)	585, 632, 826, 866
HspAI	GCGC	1 cut(s)	866
KasI	GGCGCC	1 cut(s)	865
Kpn2I	TCCGGA	1 cut(s)	223
KspAI	GTTAAC	1 cut(s)	208
KspI	CCGCGG	1 cut(s)	842
Kzo9I	GATC	2 cut(s)	63, 648
LmnI	GCTCC	1 cut(s)	543
Lsp1109I	GCAGC	5 cut(s)	290, 324, 328, 418, 421
MaeI	CTAG	2 cut(s)	483, 662
MaeII	ACGT	1 cut(s)	528
MalI	GATC	2 cut(s)	65, 650
MbiI	CCGCTC	1 cut(s)	600
MboI	GATC	2 cut(s)	63, 648
MboII	GAAGA	3 cut(s)	149, 158, 739
MhlI	GDGCHC	2 cut(s)	479, 850
MluCI	AATT	3 cut(s)	132, 216, 640
Mly113I	GGCGCC	1 cut(s)	866
MmeI	TCCRAC	3 cut(s)	93, 391, 594
MroI	TCCGGA	1 cut(s)	223
MroXI	GAANNNNTTC	1 cut(s)	119
MseI	TTAA	1 cut(s)	207
MspA1I	CMGCKG	3 cut(s)	303, 341, 841
MspI	CCGG	6 cut(s)	224, 359, 672, 693, 710, 784
MspR9I	CCNGG	3 cut(s)	694, 784, 835
MvaI	CCWGG	1 cut(s)	835
MvnI	CGCG	2 cut(s)	841, 871
MwoI	GCNNNNNNNGC	7 cut(s)	309, 312, 347, 591, 706, 874, 893
NarI	GGCGCC	1 cut(s)	866
NciI	CCSGG	2 cut(s)	694, 784
NdeII	GATC	2 cut(s)	63, 648
NlaIV	GGNNCC	2 cut(s)	266, 867
NmeAIII	GCCGAG	2 cut(s)	251, 436
PcsI	WCGNNNNNNNCGW	1 cut(s)	582
PdmI	GAANNNNTTC	1 cut(s)	119
PfeI	GAWTC	4 cut(s)	193, 523, 713, 763
PfoI	TCCNGGA	1 cut(s)	692
PluTI	GGCGCC	1 cut(s)	869
PmaCI	CACGTG	1 cut(s)	529
PmlI	CACGTG	1 cut(s)	529
Ppu21I	YACGTR	1 cut(s)	529
Psp6I	CCWGG	1 cut(s)	833
PspCI	CACGTG	1 cut(s)	529
PspFI	CCCAGC	1 cut(s)	276
PspGI	CCWGG	1 cut(s)	833
PspN4I	GGNNCC	2 cut(s)	266, 867
PspPI	GGNCC	5 cut(s)	264, 274, 323, 616, 812
PstI	CTGCAG	2 cut(s)	314, 408
SacII	CCGCGG	1 cut(s)	842
SaqAI	TTAA	1 cut(s)	207
Sau3AI	GATC	2 cut(s)	63, 648
Sau96I	GGNCC	5 cut(s)	264, 274, 323, 616, 812
ScrFI	CCNGG	3 cut(s)	694, 784, 835
SduI	GDGCHC	2 cut(s)	479, 850
SetI	ASST	9 cut(s)	422, 484, 503, 531, 540, 702, 778, 799, 902
SfcI	CTRYAG	2 cut(s)	310, 404
SfoI	GGCGCC	1 cut(s)	867
Sfr303I	CCGCGG	1 cut(s)	842
SgrBI	CCGCGG	1 cut(s)	842
SinI	GGWCC	3 cut(s)	323, 616, 812
SmlI	CTYRAG	1 cut(s)	197
SmoI	CTYRAG	1 cut(s)	197
Sse9I	AATT	3 cut(s)	132, 216, 640
SspDI	GGCGCC	1 cut(s)	865
SspMI	CTAG	2 cut(s)	483, 662
StyD4I	CCNGG	3 cut(s)	692, 782, 833
StyI	CCWWGG	1 cut(s)	319
TaaI	ACNGT	3 cut(s)	154, 574, 612
TaiI	ACGT	1 cut(s)	531
TaqI	TCGA	5 cut(s)	416, 497, 576, 761, 829
TasI	AATT	3 cut(s)	132, 216, 640
TauI	GCSGC	5 cut(s)	331, 597, 600, 841, 871
TfiI	GAWTC	4 cut(s)	193, 523, 713, 763
Tru1I	TTAA	1 cut(s)	207
Tru9I	TTAA	1 cut(s)	207
TscAI	CASTG	1 cut(s)	57
TseI	GCWGC	5 cut(s)	303, 312, 341, 406, 409
TspDTI	ATGAA	2 cut(s)	128, 273
TspRI	CASTG	1 cut(s)	57
VpaK11BI	GGWCC	3 cut(s)	323, 616, 812
XagI	CCTNNNNNAGG	1 cut(s)	904
XapI	RAATTY	1 cut(s)	216
XmnI	GAANNNNTTC	1 cut(s)	119
XspI	CTAG	2 cut(s)	483, 662

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.