AT5G02820

Component of the DNA topoisomerase VI involved in chromatin organization and progression of endoreduplication cycles. Relaxes both positive and negative superturns and exhibits a strong decatenase activity

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
5
Physical Location & Seq
Forward (+)
642554 .. 644394
1841 bp
Loading structure...
UTR
Exon/CDS
Intron
AT5G02820.1

Sequence Viewer

Length: 1284 bp
ATGGCGGATAAGAAGAAGCGAAAGCGATCAAAAGATGACGAGGCGGAGGAACTTCCTTTCAAAAGCATTCTGGAATCAGACGACGTTATCACGGAGCTTCTCAAATCGTATATTTCCTCTTCTATCAAAGCCGCCGCCGGAGCCGGCGGTGCCTCCTCCTCTTCATCGAAACCTCTAACCCTAGCTGACCTCTCTCTATCATCTTCCTGTCGTGAAGTCGCAGATCTCTCACTCTCCTCCGTGCAGACAGAGATAGAGACAGTCATCGTCCAGATCGCCCGTTCTATTCTCGCCGGTGATGGCTTCTCCTTCAGTGTTCCTTCACGCGCCGCCTCGAATCAGCTGTATGTTCCTGAGCTCGACCGTATAGTGCTAAAAGACAAATCTACCCTCCGTCCATTTGCCTCCGTTTCTTCTGTCAGGAAAACCACCATCACCACTCGTATCCTCGCCCTTATCCACCAACTCTGCCTCAGGAACATTCACGTTACTAAGCGTGATCTCTTCTACACCGACGTTAAGCTTTTCCAGGACCAGACACAGAGTGATGCTGTGTTGGATGATGTCTCATGTATGCTCGGTTGCACAAGGTCAAGTCTCAATGTCATTGCAGCAGAGAAAGGTGTGGTGGTGGGAAGGCTTATATTCAGTGACAATGGAGACATGATAGATTGCACAAAGATGGGAATGGGTGGGAAAGCCATTCCACCAAACATTGACCGGGTTGGAGATATGCAGAGTGATGCTATGTTCATACTCTTAGTTGAAAAAGATGCAGCTTATATGAGGTTAGCTGAAGACAGATTCTATAACCGGTTCCCTTGTATCATCGTGACTGCAAAAGGCCAGCCTGATGTAGCTACAAGGCTCTTCTTGAGGAAAATGAAAATGGAGCTTAAGCTTCCGGTACTTGCCTTGGTGGATAGTGATCCTTACGGATTGAAGATCTTGTCGGTGTATGGATGTGGGTCGAAGAACATGTCATATGATAGTGCAAACTTGACTACGCCTGATATTAAGTGGCTTGGAATTAGGCCGAGTGATTTGGACAAGTATAAGATACCTGAACAGTGTAGGTTGCCGATGACTGAGCAGGATATTAAGACCGGGAAGGATATGCTAGAGGAGGATTTCGTGAAGAAAAATCCCGGGTGGGTCGAGGAACTTAACCTGATGGTGAAAACGAAGCAAAAGGCTGAGATTCAGGCGTTGAGCTCTTTTGGTTTCCAGTATTTATCGGAAGTTTACTTGCCCCTGAAACTGCAGCAGCAGGATTGGCTCTGA

Protein Analysis

427

Amino Acids

47.45

Weight (kDa)

6.77

Isoelectric Point (pI)

50.94

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
TP6A_N PF04406 141 - 202 3.4e-22 Type IIB DNA topoisomerase
TOP6A-Spo11_Toprim PF21180 251 - 421 2.2e-68 Topoisomerase 6 subunit A/Spo11, Toprim domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 149
AccII CGCG 1 cut(s) 327
AciI CCGC 6 cut(s) 5, 44, 132, 135, 147, 330
AclWI GGATC 1 cut(s) 923
AcuI CTGAAG 2 cut(s) 295, 816
AdeI CACNNNGTG 1 cut(s) 545
AfaI GTAC 1 cut(s) 909
AflII CTTAAG 1 cut(s) 896
AflIII ACRYGT 1 cut(s) 978
AgeI ACCGGT 1 cut(s) 813
AgsI TTSAA 3 cut(s) 61, 767, 943
AjnI CCWGG 1 cut(s) 528
Alw21I GWGCWC 2 cut(s) 360, 1217
Alw26I GTCTC 4 cut(s) 251, 571, 602, 654
AlwI GGATC 1 cut(s) 923
Ama87I CYCGRG 1 cut(s) 1148
AoxI GGCC 2 cut(s) 844, 1034
ApeKI GCWGC 4 cut(s) 611, 776, 1264, 1267
ArsI GACNNNNNNTTYG 2 cut(s) 965, 997
AsiGI ACCGGT 1 cut(s) 813
AspLEI GCGC 1 cut(s) 329
AspS9I GGNCC 1 cut(s) 532
AsuC2I CCSGG 4 cut(s) 722, 1108, 1149, 1150
AsuHPI GGTGA 3 cut(s) 308, 427, 1189
AvaI CYCGRG 1 cut(s) 1148
AvaII GGWCC 1 cut(s) 532
AxyI CCTNAGG 1 cut(s) 473
BanI GGYRCC 1 cut(s) 149
BanII GRGCYC 2 cut(s) 360, 1217
BbsI GAAGAC 1 cut(s) 804
Bbv12I GWGCWC 2 cut(s) 360, 1217
BbvI GCAGC 4 cut(s) 623, 788, 1276, 1279
BccI CCATC 4 cut(s) 293, 440, 676, 1168
BciT130I CCWGG 1 cut(s) 530
BciVI GTATCC 1 cut(s) 455
BcnI CCSGG 4 cut(s) 722, 1108, 1149, 1150
BcoDI GTCTC 4 cut(s) 251, 571, 602, 654
BfaI CTAG 2 cut(s) 182, 1121
BfmI CTRYAG 1 cut(s) 1262
BfrI CTTAAG 1 cut(s) 896
BfuI GTATCC 1 cut(s) 455
BglII AGATCT 2 cut(s) 223, 945
BisI GCNGC 7 cut(s) 132, 135, 330, 612, 777, 1265, 1268
BlsI GCNGC 7 cut(s) 133, 136, 331, 613, 778, 1266, 1269
Bme1390I CCNGG 5 cut(s) 530, 722, 1108, 1149, 1150
Bme18I GGWCC 1 cut(s) 532
BmeT110I CYCGRG 1 cut(s) 1148
BmgT120I GGNCC 1 cut(s) 532
BmiI GGNNCC 3 cut(s) 142, 151, 818
BmrFI CCNGG 5 cut(s) 530, 722, 1108, 1149, 1150
BmsI GCATC 3 cut(s) 538, 733, 763
BpiI GAAGAC 1 cut(s) 804
Bpu10I CCTNAGC 1 cut(s) 354
BpuEI CTTGAG 1 cut(s) 895
BpuMI CCSGG 4 cut(s) 722, 1108, 1149, 1150
BsaBI GATNNNNATC 1 cut(s) 927
BsaJI CCNNGG 2 cut(s) 915, 1148
BsaWI WCCGGW 2 cut(s) 813, 904
Bse118I RCCGGY 3 cut(s) 143, 293, 813
Bse1I ACTGG 1 cut(s) 1228
Bse21I CCTNAGG 1 cut(s) 473
Bse3DI GCAATG 1 cut(s) 606
Bse8I GATNNNNATC 1 cut(s) 927
BseBI CCWGG 1 cut(s) 530
BseDI CCNNGG 2 cut(s) 915, 1148
BseGI GGATG 2 cut(s) 565, 968
BseJI GATNNNNATC 1 cut(s) 927
BseMI GCAATG 1 cut(s) 606
BseMII CTCAG 4 cut(s) 345, 487, 1080, 1188
BseNI ACTGG 1 cut(s) 1228
BseRI GAGGAG 4 cut(s) 145, 148, 226, 1139
BseXI GCAGC 4 cut(s) 623, 788, 1276, 1279
BsgI GTGCAG 1 cut(s) 263
Bsh1236I CGCG 1 cut(s) 327
Bsh1285I CGRYCG 1 cut(s) 364
BshFI GGCC 2 cut(s) 846, 1036
BshNI GGYRCC 1 cut(s) 149
BshTI ACCGGT 1 cut(s) 813
BsiEI CGRYCG 1 cut(s) 364
BsiHKAI GWGCWC 2 cut(s) 360, 1217
BsiHKCI CYCGRG 1 cut(s) 1148
BsiSI CCGG 8 cut(s) 138, 144, 294, 721, 814, 905, 1107, 1149
BsmAI GTCTC 4 cut(s) 251, 571, 602, 654
BsmI GAATGC 1 cut(s) 66
BsnI GGCC 2 cut(s) 846, 1036
BsoBI CYCGRG 1 cut(s) 1148
Bsp1286I GDGCHC 2 cut(s) 360, 1217
Bsp143I GATC 6 cut(s) 26, 223, 273, 499, 928, 945
BspACI CCGC 6 cut(s) 5, 44, 132, 135, 147, 330
BspANI GGCC 2 cut(s) 846, 1036
BspCNI CTCAG 4 cut(s) 346, 486, 1081, 1189
BspFNI CGCG 1 cut(s) 327
BspLI GGNNCC 3 cut(s) 142, 151, 818
BspMAI CTGCAG 1 cut(s) 1266
BspPI GGATC 1 cut(s) 923
BspQI GCTCTTC 1 cut(s) 875
BspT107I GGYRCC 1 cut(s) 149
BspTI CTTAAG 1 cut(s) 896
BsrDI GCAATG 1 cut(s) 606
BsrFI RCCGGY 3 cut(s) 143, 293, 813
BsrI ACTGG 1 cut(s) 1228
BssAI RCCGGY 3 cut(s) 143, 293, 813
BssECI CCNNGG 2 cut(s) 915, 1148
BssMI GATC 6 cut(s) 26, 223, 273, 499, 928, 945
BssT1I CCWWGG 1 cut(s) 915
Bst2UI CCWGG 1 cut(s) 530
Bst4CI ACNGT 3 cut(s) 262, 365, 1071
Bst6I CTCTTC 4 cut(s) 124, 166, 509, 875
BstAFI CTTAAG 1 cut(s) 896
BstC8I GCNNGC 2 cut(s) 145, 848
BstDEI CTNAG 6 cut(s) 354, 473, 492, 760, 1089, 1197
BstF5I GGATG 2 cut(s) 565, 968
BstFNI CGCG 1 cut(s) 327
BstHHI GCGC 1 cut(s) 329
BstKTI GATC 6 cut(s) 29, 226, 276, 502, 931, 948
BstMAI GTCTC 4 cut(s) 251, 571, 602, 654
BstMBI GATC 6 cut(s) 26, 223, 273, 499, 928, 945
BstMCI CGRYCG 1 cut(s) 364
BstMWI GCNNNNNNNGC 3 cut(s) 140, 149, 1276
BstNI CCWGG 1 cut(s) 530
BstNSI RCATGY 1 cut(s) 982
BstSCI CCNGG 5 cut(s) 528, 720, 1106, 1147, 1148
BstSFI CTRYAG 1 cut(s) 1262
BstUI CGCG 1 cut(s) 327
BstV1I GCAGC 4 cut(s) 623, 788, 1276, 1279
BstV2I GAAGAC 1 cut(s) 804
BstX2I RGATCY 2 cut(s) 223, 945
BstYI RGATCY 2 cut(s) 223, 945
Bsu36I CCTNAGG 1 cut(s) 473
BsuI GTATCC 1 cut(s) 455
BsuRI GGCC 2 cut(s) 846, 1036
BtsCI GGATG 2 cut(s) 565, 968
BtsIMutI CAGTG 3 cut(s) 319, 655, 1076
Cac8I GCNNGC 2 cut(s) 145, 848
CfoI GCGC 1 cut(s) 329
Cfr10I RCCGGY 3 cut(s) 143, 293, 813
Cfr13I GGNCC 1 cut(s) 532
Cfr9I CCCGGG 1 cut(s) 1148
Csp6I GTAC 1 cut(s) 908
CspAI ACCGGT 1 cut(s) 813
CviAII CATG 3 cut(s) 570, 664, 979
CviQI GTAC 1 cut(s) 908
DdeI CTNAG 6 cut(s) 354, 473, 492, 760, 1089, 1197
DpnI GATC 6 cut(s) 28, 225, 275, 501, 930, 947
DpnII GATC 6 cut(s) 26, 223, 273, 499, 928, 945
DraIII CACNNNGTG 1 cut(s) 545
Eam1104I CTCTTC 4 cut(s) 124, 166, 509, 875
EarI CTCTTC 4 cut(s) 124, 166, 509, 875
EciI GGCGGA 2 cut(s) 20, 59
Ecl136II GAGCTC 2 cut(s) 358, 1215
Eco130I CCWWGG 1 cut(s) 915
Eco24I GRGCYC 2 cut(s) 360, 1217
Eco47I GGWCC 1 cut(s) 532
Eco53kI GAGCTC 2 cut(s) 358, 1215
Eco57I CTGAAG 2 cut(s) 295, 816
Eco81I CCTNAGG 1 cut(s) 473
Eco88I CYCGRG 1 cut(s) 1148
EcoICRI GAGCTC 2 cut(s) 358, 1215
EcoRII CCWGG 1 cut(s) 528
EcoT14I CCWWGG 1 cut(s) 915
EcoT38I GRGCYC 2 cut(s) 360, 1217
ErhI CCWWGG 1 cut(s) 915
FaeI CATG 3 cut(s) 573, 667, 982
FatI CATG 3 cut(s) 569, 663, 978
FauNDI CATATG 1 cut(s) 985
Fnu4HI GCNGC 7 cut(s) 132, 135, 330, 612, 777, 1265, 1268
FokI GGATG 2 cut(s) 572, 975
FriOI GRGCYC 2 cut(s) 360, 1217
Fsp4HI GCNGC 7 cut(s) 132, 135, 330, 612, 777, 1265, 1268
FspBI CTAG 2 cut(s) 182, 1121
GlaI GCGC 1 cut(s) 328
GluI GCNGC 7 cut(s) 132, 135, 330, 612, 777, 1265, 1268
HaeIII GGCC 2 cut(s) 846, 1036
HapII CCGG 8 cut(s) 138, 144, 294, 721, 814, 905, 1107, 1149
HhaI GCGC 1 cut(s) 329
Hin1II CATG 3 cut(s) 573, 667, 982
Hin6I GCGC 1 cut(s) 327
HinP1I GCGC 1 cut(s) 327
HindIII AAGCTT 2 cut(s) 521, 899
HinfI GANTC 4 cut(s) 74, 337, 804, 1201
HpaII CCGG 8 cut(s) 138, 144, 294, 721, 814, 905, 1107, 1149
HphI GGTGA 3 cut(s) 308, 427, 1189
Hpy166II GTNNAC 1 cut(s) 1246
Hpy188I TCNGA 3 cut(s) 79, 1240, 1283
Hpy188III TCNNGA 9 cut(s) 71, 212, 271, 353, 421, 475, 832, 874, 1135
Hpy8I GTNNAC 1 cut(s) 1246
Hpy99I CGWCG 2 cut(s) 86, 518
HpyAV CCTTC 4 cut(s) 319, 330, 630, 1105
HpyCH4III ACNGT 3 cut(s) 262, 365, 1071
HpyCH4IV ACGT 3 cut(s) 84, 486, 516
HpyCH4V TGCA 9 cut(s) 244, 585, 611, 675, 736, 776, 839, 995, 1264
HpyF10VI GCNNNNNNNGC 3 cut(s) 140, 149, 1276
HpyF3I CTNAG 6 cut(s) 354, 473, 492, 760, 1089, 1197
HpySE526I ACGT 3 cut(s) 84, 486, 516
Hsp92II CATG 3 cut(s) 573, 667, 982
HspAI GCGC 1 cut(s) 327
KroI GCCGGC 1 cut(s) 143
KroNI GCCGGC 1 cut(s) 145
Kzo9I GATC 6 cut(s) 26, 223, 273, 499, 928, 945
LguI GCTCTTC 1 cut(s) 875
LmnI GCTCC 3 cut(s) 94, 140, 892
Lsp1109I GCAGC 4 cut(s) 623, 788, 1276, 1279
LweI GCATC 3 cut(s) 538, 733, 763
MaeI CTAG 2 cut(s) 182, 1121
MaeII ACGT 3 cut(s) 84, 486, 516
MaeIII GTNAC 3 cut(s) 487, 650, 832
MalI GATC 6 cut(s) 28, 225, 275, 501, 930, 947
MboI GATC 6 cut(s) 26, 223, 273, 499, 928, 945
MflI RGATCY 2 cut(s) 223, 945
MhlI GDGCHC 2 cut(s) 360, 1217
MluCI AATT 1 cut(s) 1029
MmeI TCCRAC 2 cut(s) 537, 706
MroNI GCCGGC 1 cut(s) 143
MseI TTAA 5 cut(s) 519, 897, 1017, 1101, 1167
MslI CAYNNNNRTG 1 cut(s) 680
MspA1I CMGCKG 1 cut(s) 343
MspCI CTTAAG 1 cut(s) 896
MspI CCGG 8 cut(s) 138, 144, 294, 721, 814, 905, 1107, 1149
MspR9I CCNGG 5 cut(s) 530, 722, 1108, 1149, 1150
Mva1269I GAATGC 1 cut(s) 66
MvaI CCWGG 1 cut(s) 530
MvnI CGCG 1 cut(s) 327
MwoI GCNNNNNNNGC 3 cut(s) 140, 149, 1276
NaeI GCCGGC 1 cut(s) 145
NciI CCSGG 4 cut(s) 722, 1108, 1149, 1150
NdeI CATATG 1 cut(s) 985
NdeII GATC 6 cut(s) 26, 223, 273, 499, 928, 945
NgoMIV GCCGGC 1 cut(s) 143
NlaIII CATG 3 cut(s) 573, 667, 982
NlaIV GGNNCC 3 cut(s) 142, 151, 818
NmeAIII GCCGAG 1 cut(s) 1062
NmuCI GTSAC 2 cut(s) 650, 832
NspI RCATGY 1 cut(s) 982
PciI ACATGT 1 cut(s) 978
PciSI GCTCTTC 1 cut(s) 875
PctI GAATGC 1 cut(s) 66
PdiI GCCGGC 1 cut(s) 145
PfeI GAWTC 4 cut(s) 74, 337, 804, 1201
PfoI TCCNGGA 1 cut(s) 528
PinAI ACCGGT 1 cut(s) 813
PkrI GCNGC 7 cut(s) 133, 136, 331, 613, 778, 1266, 1269
PscI ACATGT 1 cut(s) 978
Psp124BI GAGCTC 2 cut(s) 360, 1217
Psp6I CCWGG 1 cut(s) 528
PspGI CCWGG 1 cut(s) 528
PspN4I GGNNCC 3 cut(s) 142, 151, 818
PspPI GGNCC 1 cut(s) 532
PstI CTGCAG 1 cut(s) 1266
PsuI RGATCY 2 cut(s) 223, 945
PvuII CAGCTG 1 cut(s) 343
RsaI GTAC 1 cut(s) 909
RsaNI GTAC 1 cut(s) 908
RseI CAYNNNNRTG 1 cut(s) 680
SacI GAGCTC 2 cut(s) 360, 1217
SapI GCTCTTC 1 cut(s) 875
SaqAI TTAA 5 cut(s) 519, 897, 1017, 1101, 1167
SatI GCNGC 7 cut(s) 132, 135, 330, 612, 777, 1265, 1268
Sau3AI GATC 6 cut(s) 26, 223, 273, 499, 928, 945
Sau96I GGNCC 1 cut(s) 532
ScrFI CCNGG 5 cut(s) 530, 722, 1108, 1149, 1150
SduI GDGCHC 2 cut(s) 360, 1217
SfaNI GCATC 3 cut(s) 538, 733, 763
SfcI CTRYAG 1 cut(s) 1262
SgrAI CRCCGGYG 1 cut(s) 293
SinI GGWCC 1 cut(s) 532
SmaI CCCGGG 1 cut(s) 1150
SmiMI CAYNNNNRTG 1 cut(s) 680
SmlI CTYRAG 2 cut(s) 874, 896
SmoI CTYRAG 2 cut(s) 874, 896
Sse9I AATT 1 cut(s) 1029
SsiI CCGC 6 cut(s) 5, 44, 132, 135, 147, 330
SspMI CTAG 2 cut(s) 182, 1121
SstI GAGCTC 2 cut(s) 360, 1217
StyD4I CCNGG 5 cut(s) 528, 720, 1106, 1147, 1148
StyI CCWWGG 1 cut(s) 915
TaaI ACNGT 3 cut(s) 262, 365, 1071
TaiI ACGT 3 cut(s) 87, 489, 519
TaqI TCGA 5 cut(s) 167, 335, 360, 971, 1158
TasI AATT 1 cut(s) 1029
TauI GCSGC 3 cut(s) 134, 137, 332
TfiI GAWTC 4 cut(s) 74, 337, 804, 1201
Tru1I TTAA 5 cut(s) 519, 897, 1017, 1101, 1167
Tru9I TTAA 5 cut(s) 519, 897, 1017, 1101, 1167
TscAI CASTG 3 cut(s) 319, 655, 1076
TseFI GTSAC 2 cut(s) 650, 832
TseI GCWGC 4 cut(s) 611, 776, 1264, 1267
Tsp45I GTSAC 2 cut(s) 650, 832
TspDTI ATGAA 3 cut(s) 153, 742, 899
TspGWI ACGGA 5 cut(s) 107, 229, 383, 397, 951
TspMI CCCGGG 1 cut(s) 1148
TspRI CASTG 3 cut(s) 319, 655, 1076
Vha464I CTTAAG 1 cut(s) 896
VpaK11BI GGWCC 1 cut(s) 532
XceI RCATGY 1 cut(s) 982
XmaI CCCGGG 1 cut(s) 1148
XspI CTAG 2 cut(s) 182, 1121
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.