Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb2

Orthogroup ID

OG0006264

Physical Location & Seq

Genomic Coordinates Forward (+)

3085909 .. 3086884

Gene Structure 976 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_2g03881.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 858 bp

ATGGCTGACAACCCAGAGTCCAGTCTACGTAAAGCAGCTCTGCCTGCTCCGTCCTCCTCCGAAAACATCGATGACCTCCCTCCCTCGGAAGTCCTGAAGAGAGTCGAAGCTTTGAAGTTAAAAATCGCAAATAGTGACGAAGAAATAAGCTTGATACAAGTCATACAACCACCACTAGATCACTGCAAAAGTTGGTGCCTTGTAGGCGACGACACGGAGAGAGTTTGGTTGGAGATGATGAAGAACATGCAACTTTCTGAACCGAACGACAATGAACATAGTAAACAAGTTGTGCTTGCTGCGCTTGATAGTATTATTGAGCTGTTGGACATGGATATTCACTGTGACCTTATTATGCTTTATTACAGGCATCACAGCGTCTTTGGAAGACAATCTGTATCAGATTTAGCTGTCGATTACATCTGTTCTACTCTTGGTTGCTCTCAATCCACGCTCAACATCATTGAATCCGACTCCGAGGGTCTCCCAGGCTATGTTGCAGGTCTCTTTTCTTTCAAGATGGATGGTATCGAACACTTTTGTAGTAATCTAGGGCCATACGGGAAAACCATCCCACCTCGTACAAAGATGGCTACTGATATGAAAAATCATGGAGCCTTGTTCGTATTACTGGTGCAGAATAGTTCTGTGTTTATTACTTTGACTCAATACGGCTTTGTTAATGACTATCAATGCATCCTCATCGCCGGAGAGGACTTCCCCACGACTGAAATCATTAGTTTCACGAAAAAGGTGTCGGAGGAGTTGAAACTTCCTTTATTTTGCCTTTTGAATTGGGATCCAGTGAACTTACGGATTCTATCGGGTTGTGGTGGTGCTGGACCAACCAAATTGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000706 GO:0000729 GO:0006139 GO:0006259 GO:0006281 GO:0006302 GO:0006725 GO:0006807 GO:0006950 GO:0006974 GO:0007049 GO:0008150 GO:0008152 GO:0009987 GO:0022402 GO:0022414 GO:0033554 GO:0034641 GO:0043170 GO:0044237 GO:0044238 GO:0044260 GO:0046483 GO:0050896 GO:0051321 GO:0051716 GO:0071704 GO:0090304 GO:1901360 GO:1903046

KEGG Pathways

Metabolic & Signaling

ko04113 map04113

Pfam Domains

Protein Families

TP6A_N

Protein Analysis

286

Amino Acids

31.59

Weight (kDa)

4.75

Isoelectric Point (pI)

47.73

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
TP6A_N	PF04406	98 - 154	3.4e-09	Type IIB DNA topoisomerase
TOP6A-Spo11_Toprim	PF21180	208 - 275	9.7e-11	Topoisomerase 6 subunit A/Spo11, Toprim domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0006264)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G02820
fragaria_vesca	FvH4_1g22710 FvH4_1g22710 FvH4_1g22710 FvH4_1g22710 FvH4_2g03881 FvH4_6g05151
malus_domestica	MD04G1113900.v1.1
prunus_persica	Prupe.6G243200_v2.0.a1
pyrus_communis	pycom04g10130
rosa_chinensis	RchiOBHm_Chr2g0103111 RchiOBHm_Chr2g0116961 RchiOBHm_Chr3g0453711
rosa_laevigata	RLG00000018316
rosa_multiflora	Rmu_sc0003556.1_g000009 Rmu_sc0011969.1_g000014 Rmu_ssc0000238.1_g000021 Rmu_ssc0000238.1_g000022
rosa_roxburghii	Rroxscaffold_2G00126860 Rroxscaffold_6G00430630
rosa_rugosa	Rorug02G0209000.1
rosa_samantha	Rh2AG265100 Rh2BG276800 Rh2DG272500 Rh2DG291500
rosa_wichuraiana	Rw2G020900 Rw3G004140

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	491
AccB1I	GGYRCC	1 cut(s)	195
AccI	GTMKAC	1 cut(s)	25
AclWI	GGATC	2 cut(s)	794, 807
AcuI	CTGAAG	1 cut(s)	116
AfaI	GTAC	1 cut(s)	583
AfiI	CCNNNNNNNGG	1 cut(s)	85
AgsI	TTSAA	5 cut(s)	115, 467, 517, 769, 793
AjnI	CCWGG	1 cut(s)	487
AluBI	AGCT	5 cut(s)	38, 110, 150, 322, 410
AluI	AGCT	5 cut(s)	38, 110, 150, 322, 410
Alw26I	GTCTC	2 cut(s)	488, 509
AlwI	GGATC	2 cut(s)	794, 807
AoxI	GGCC	1 cut(s)	554
ApeKI	GCWGC	2 cut(s)	35, 299
ArsI	GACNNNNNNTTYG	2 cut(s)	740, 772
AspLEI	GCGC	1 cut(s)	304
AspS9I	GGNCC	2 cut(s)	554, 842
AvaII	GGWCC	1 cut(s)	842
BamHI	GGATCC	1 cut(s)	799
BanI	GGYRCC	1 cut(s)	195
BbsI	GAAGAC	1 cut(s)	394
BbvI	GCAGC	2 cut(s)	47, 286
BccI	CCATC	4 cut(s)	514, 518, 578, 583
BceAI	ACGGC	1 cut(s)	688
BcgI	CGANNNNNNTGC	2 cut(s)	685, 719
BciT130I	CCWGG	1 cut(s)	489
BcoDI	GTCTC	2 cut(s)	488, 509
BfaI	CTAG	2 cut(s)	176, 551
BfuAI	ACCTGC	1 cut(s)	491
BglI	GCCNNNNNGGC	1 cut(s)	204
BisI	GCNGC	2 cut(s)	36, 300
BlsI	GCNGC	2 cut(s)	37, 301
Bme1390I	CCNGG	1 cut(s)	489
Bme18I	GGWCC	1 cut(s)	842
BmgT120I	GGNCC	2 cut(s)	554, 842
BmiI	GGNNCC	3 cut(s)	197, 616, 801
BmrFI	CCNGG	1 cut(s)	489
BmsI	GCATC	2 cut(s)	379, 705
BpiI	GAAGAC	1 cut(s)	394
Bsa29I	ATCGAT	1 cut(s)	69
BsaAI	YACGTR	1 cut(s)	29
BsaI	GGTCTC	2 cut(s)	488, 509
BsaJI	CCNNGG	3 cut(s)	84, 477, 487
Bsc4I	CCNNNNNNNGG	1 cut(s)	85
Bse1I	ACTGG	3 cut(s)	21, 636, 803
BseBI	CCWGG	1 cut(s)	489
BseCI	ATCGAT	1 cut(s)	69
BseDI	CCNNGG	3 cut(s)	84, 477, 487
BseGI	GGATG	3 cut(s)	529, 570, 696
BseLI	CCNNNNNNNGG	1 cut(s)	85
BseNI	ACTGG	3 cut(s)	21, 636, 803
BseRI	GAGGAG	2 cut(s)	46, 776
BseXI	GCAGC	2 cut(s)	47, 286
BsgI	GTGCAG	1 cut(s)	656
BshFI	GGCC	1 cut(s)	556
BshNI	GGYRCC	1 cut(s)	195
BshVI	ATCGAT	1 cut(s)	69
BsiSI	CCGG	1 cut(s)	708
BslI	CCNNNNNNNGG	1 cut(s)	85
BsmAI	GTCTC	2 cut(s)	488, 509
BsnI	GGCC	1 cut(s)	556
Bso31I	GGTCTC	2 cut(s)	488, 509
Bsp143I	GATC	2 cut(s)	178, 799
BspANI	GGCC	1 cut(s)	556
BspDI	ATCGAT	1 cut(s)	69
BspLI	GGNNCC	3 cut(s)	197, 616, 801
BspMI	ACCTGC	1 cut(s)	491
BspPI	GGATC	2 cut(s)	794, 807
BspT107I	GGYRCC	1 cut(s)	195
BspTNI	GGTCTC	2 cut(s)	488, 509
BsrI	ACTGG	3 cut(s)	21, 636, 803
BssECI	CCNNGG	3 cut(s)	84, 477, 487
BssMI	GATC	2 cut(s)	178, 799
Bst2UI	CCWGG	1 cut(s)	489
Bst4CI	ACNGT	1 cut(s)	344
Bst6I	CTCTTC	1 cut(s)	92
BstBAI	YACGTR	1 cut(s)	29
BstC8I	GCNNGC	2 cut(s)	45, 297
BstF5I	GGATG	3 cut(s)	529, 570, 696
BstHHI	GCGC	1 cut(s)	304
BstKTI	GATC	2 cut(s)	181, 802
BstMAI	GTCTC	2 cut(s)	488, 509
BstMBI	GATC	2 cut(s)	178, 799
BstMWI	GCNNNNNNNGC	3 cut(s)	44, 204, 301
BstNI	CCWGG	1 cut(s)	489
BstNSI	RCATGY	1 cut(s)	250
BstSCI	CCNGG	1 cut(s)	487
BstSNI	TACGTA	1 cut(s)	29
BstV1I	GCAGC	2 cut(s)	47, 286
BstV2I	GAAGAC	1 cut(s)	394
BstX2I	RGATCY	1 cut(s)	799
BstYI	RGATCY	1 cut(s)	799
Bsu15I	ATCGAT	1 cut(s)	69
BsuRI	GGCC	1 cut(s)	556
BsuTUI	ATCGAT	1 cut(s)	69
BtgZI	GCGATG	1 cut(s)	688
BtsCI	GGATG	3 cut(s)	529, 570, 696
BtsI	GCAGTG	1 cut(s)	181
BtsIMutI	CAGTG	3 cut(s)	181, 340, 810
BveI	ACCTGC	1 cut(s)	491
Cac8I	GCNNGC	2 cut(s)	45, 297
CfoI	GCGC	1 cut(s)	304
Cfr13I	GGNCC	2 cut(s)	554, 842
ClaI	ATCGAT	1 cut(s)	69
CseI	GACGC	1 cut(s)	367
Csp6I	GTAC	1 cut(s)	582
CviAII	CATG	3 cut(s)	247, 331, 611
CviQI	GTAC	1 cut(s)	582
DpnI	GATC	2 cut(s)	180, 801
DpnII	GATC	2 cut(s)	178, 799
Eam1104I	CTCTTC	1 cut(s)	92
EarI	CTCTTC	1 cut(s)	92
Eco105I	TACGTA	1 cut(s)	29
Eco31I	GGTCTC	2 cut(s)	488, 509
Eco47I	GGWCC	1 cut(s)	842
Eco57I	CTGAAG	1 cut(s)	116
EcoRII	CCWGG	1 cut(s)	487
EcoT22I	ATGCAT	1 cut(s)	698
FaeI	CATG	3 cut(s)	250, 334, 614
FaiI	YATR	9 cut(s)	164, 248, 279, 332, 356, 495, 559, 602, 612
FalI	AAGNNNNNCTT	2 cut(s)	279, 311
FatI	CATG	3 cut(s)	246, 330, 610
FblI	GTMKAC	1 cut(s)	25
Fnu4HI	GCNGC	2 cut(s)	36, 300
FokI	GGATG	3 cut(s)	536, 557, 683
Fsp4HI	GCNGC	2 cut(s)	36, 300
FspBI	CTAG	2 cut(s)	176, 551
GlaI	GCGC	1 cut(s)	303
GluI	GCNGC	2 cut(s)	36, 300
HaeIII	GGCC	1 cut(s)	556
HapII	CCGG	1 cut(s)	708
HgaI	GACGC	1 cut(s)	367
HhaI	GCGC	1 cut(s)	304
Hin1II	CATG	3 cut(s)	250, 334, 614
Hin6I	GCGC	1 cut(s)	302
HinP1I	GCGC	1 cut(s)	302
HindIII	AAGCTT	2 cut(s)	108, 148
HinfI	GANTC	6 cut(s)	17, 102, 467, 473, 664, 817
HpaII	CCGG	1 cut(s)	708
Hpy166II	GTNNAC	3 cut(s)	26, 284, 808
Hpy188I	TCNGA	7 cut(s)	61, 88, 259, 403, 472, 478, 760
Hpy188III	TCNNGA	3 cut(s)	94, 517, 745
Hpy8I	GTNNAC	3 cut(s)	26, 284, 808
Hpy99I	CGWCG	1 cut(s)	212
HpyCH4III	ACNGT	1 cut(s)	344
HpyCH4IV	ACGT	1 cut(s)	28
HpyCH4V	TGCA	5 cut(s)	186, 250, 500, 637, 696
HpyF10VI	GCNNNNNNNGC	3 cut(s)	44, 204, 301
HpySE526I	ACGT	1 cut(s)	28
Hsp92II	CATG	3 cut(s)	250, 334, 614
HspAI	GCGC	1 cut(s)	302
Kzo9I	GATC	2 cut(s)	178, 799
LmnI	GCTCC	2 cut(s)	52, 614
Lsp1109I	GCAGC	2 cut(s)	47, 286
LweI	GCATC	2 cut(s)	379, 705
MaeI	CTAG	2 cut(s)	176, 551
MaeII	ACGT	1 cut(s)	28
MaeIII	GTNAC	2 cut(s)	134, 344
MalI	GATC	2 cut(s)	180, 801
MboI	GATC	2 cut(s)	178, 799
MboII	GAAGA	4 cut(s)	109, 152, 253, 399
MflI	RGATCY	1 cut(s)	799
MluCI	AATT	2 cut(s)	793, 851
MlyI	GAGTC	4 cut(s)	26, 111, 467, 658
MmeI	TCCRAC	4 cut(s)	210, 306, 495, 738
Mph1103I	ATGCAT	1 cut(s)	698
MseI	TTAA	2 cut(s)	119, 681
MspI	CCGG	1 cut(s)	708
MspR9I	CCNGG	1 cut(s)	489
MvaI	CCWGG	1 cut(s)	489
MwoI	GCNNNNNNNGC	3 cut(s)	44, 204, 301
NdeII	GATC	2 cut(s)	178, 799
NlaIII	CATG	3 cut(s)	250, 334, 614
NlaIV	GGNNCC	3 cut(s)	197, 616, 801
NmuCI	GTSAC	2 cut(s)	134, 344
NsiI	ATGCAT	1 cut(s)	698
NspI	RCATGY	1 cut(s)	250
PfeI	GAWTC	2 cut(s)	467, 817
PkrI	GCNGC	2 cut(s)	37, 301
PleI	GAGTC	4 cut(s)	25, 110, 467, 658
PpsI	GAGTC	4 cut(s)	25, 110, 467, 658
Ppu21I	YACGTR	1 cut(s)	29
Psp6I	CCWGG	1 cut(s)	487
PspGI	CCWGG	1 cut(s)	487
PspN4I	GGNNCC	3 cut(s)	197, 616, 801
PspPI	GGNCC	2 cut(s)	554, 842
PsuI	RGATCY	1 cut(s)	799
RsaI	GTAC	1 cut(s)	583
RsaNI	GTAC	1 cut(s)	582
SaqAI	TTAA	2 cut(s)	119, 681
SatI	GCNGC	2 cut(s)	36, 300
Sau3AI	GATC	2 cut(s)	178, 799
Sau96I	GGNCC	2 cut(s)	554, 842
SchI	GAGTC	4 cut(s)	26, 111, 467, 658
ScrFI	CCNGG	1 cut(s)	489
SfaNI	GCATC	2 cut(s)	379, 705
SinI	GGWCC	1 cut(s)	842
SnaBI	TACGTA	1 cut(s)	29
Sse9I	AATT	2 cut(s)	793, 851
SspMI	CTAG	2 cut(s)	176, 551
StyD4I	CCNGG	1 cut(s)	487
TaaI	ACNGT	1 cut(s)	344
TaiI	ACGT	1 cut(s)	31
TaqI	TCGA	4 cut(s)	69, 105, 414, 531
TasI	AATT	2 cut(s)	793, 851
TfiI	GAWTC	2 cut(s)	467, 817
Tru1I	TTAA	2 cut(s)	119, 681
Tru9I	TTAA	2 cut(s)	119, 681
TscAI	CASTG	3 cut(s)	188, 347, 810
TseFI	GTSAC	2 cut(s)	134, 344
TseI	GCWGC	2 cut(s)	35, 299
Tsp45I	GTSAC	2 cut(s)	134, 344
TspDTI	ATGAA	3 cut(s)	254, 288, 617
TspGWI	ACGGA	3 cut(s)	39, 230, 829
TspRI	CASTG	3 cut(s)	188, 347, 810
VpaK11BI	GGWCC	1 cut(s)	842
XceI	RCATGY	1 cut(s)	250
XmiI	GTMKAC	1 cut(s)	25
XspI	CTAG	2 cut(s)	176, 551
Zsp2I	ATGCAT	1 cut(s)	698

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.