Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_ssc0000238.1

Orthogroup ID

OG0006264

Physical Location & Seq

Genomic Coordinates Forward (+)

92148 .. 92873

Gene Structure 726 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_ssc0000238.1_g000021.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 726 bp

atgctcaaagtcctccactccatcctcgacggcaagggcttcgccttcgacgtcccctcacgcgccgccgccaaccagctctacgtccccgaactcgacagcatcgtcctcaaagacaaatcctccctccgcccctacgccaacgtctccaccgtccgcaaggccaccgtcaccgcccggatcctccagctcatccacgagctcaccatcaaggacatccacgtcaccaagcgtgacctcttctacaccgacgtcaagctcttccaggaccagtcccagtccgataccatcctcgacgacgtgtcgtgtatgatcggctgcactaggtccagcttgaacgtcgtcgcggcggagaaaggggtggttgtcggccgtctgatcttcagtgacgacggtgatgtgatcgattgtactaagatggggatgggcgggaaagctatcccgccgaatataaacagagttggtgatatgcagagtgatgcattgttcattttgcttgttgagaaagatgctgcttatatgagattggctgaggatcggttctataatcggtttccttgcatcattgtgactgcgaaaggccagccggatgtcgcaaccaggctgttcttgaggaagatgaagatggaattgaagcttcctgtgctggcattggtggatagtgatccttacgggctgaagattttgtctgtgtatggctgtggttcaaagaatatgtcatcataa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000228 GO:0000280 GO:0000706 GO:0000729 GO:0001708 GO:0003674 GO:0003676 GO:0003677 GO:0003824 GO:0003916 GO:0003918 GO:0004518 GO:0004519 GO:0004520 GO:0004536 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005694 GO:0006139 GO:0006259 GO:0006281 GO:0006302 GO:0006310 GO:0006725 GO:0006807 GO:0006950 GO:0006974 GO:0006996 GO:0007049 GO:0007127 GO:0007131 GO:0008094 GO:0008150 GO:0008152 GO:0008544 GO:0009888 GO:0009913 GO:0009957 GO:0009987 GO:0016043 GO:0016462 GO:0016787 GO:0016788 GO:0016817 GO:0016818 GO:0016853 GO:0016887 GO:0016889 GO:0016894 GO:0017111 GO:0022402 GO:0022414 GO:0030154 GO:0030855 GO:0031974 GO:0031981 GO:0032502 GO:0033554 GO:0034641 GO:0035825 GO:0042138 GO:0042623 GO:0042802 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044237 GO:0044238 GO:0044260 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0045165 GO:0046483 GO:0048285 GO:0048856 GO:0048869 GO:0050896 GO:0051321 GO:0051716 GO:0060429 GO:0061505 GO:0061982 GO:0070013 GO:0071704 GO:0071840 GO:0090304 GO:0090305 GO:0097159 GO:0140013 GO:0140097 GO:1901360 GO:1901363 GO:1903046

KEGG Pathways

Metabolic & Signaling

ko04113 map04113

Pfam Domains

Protein Families

TP6A_N

Protein Analysis

241

Amino Acids

26.64

Weight (kDa)

8.52

Isoelectric Point (pI)

48.85

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0006264)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G02820
fragaria_vesca	FvH4_1g22710 FvH4_1g22710 FvH4_1g22710 FvH4_1g22710 FvH4_2g03881 FvH4_6g05151
malus_domestica	MD04G1113900.v1.1
prunus_persica	Prupe.6G243200_v2.0.a1
pyrus_communis	pycom04g10130
rosa_chinensis	RchiOBHm_Chr2g0103111 RchiOBHm_Chr2g0116961 RchiOBHm_Chr3g0453711
rosa_laevigata	RLG00000018316
rosa_multiflora	Rmu_sc0003556.1_g000009 Rmu_sc0011969.1_g000014 Rmu_ssc0000238.1_g000021 Rmu_ssc0000238.1_g000022
rosa_roxburghii	Rroxscaffold_2G00126860 Rroxscaffold_6G00430630
rosa_rugosa	Rorug02G0209000.1
rosa_samantha	Rh2AG265100 Rh2BG276800 Rh2DG272500 Rh2DG291500
rosa_wichuraiana	Rw2G020900 Rw3G004140

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	2 cut(s)	104, 221
AatII	GACGTC	2 cut(s)	54, 255
AccII	CGCG	2 cut(s)	63, 347
AciI	CCGC	9 cut(s)	66, 69, 130, 157, 174, 347, 350, 429, 443
AclWI	GGATC	4 cut(s)	175, 188, 543, 659
AcoI	YGGCCR	1 cut(s)	370
AcuI	CTGAAG	2 cut(s)	367, 698
AcyI	GRCGYC	2 cut(s)	51, 252
AfaI	GTAC	1 cut(s)	412
AflIII	ACRYGT	1 cut(s)	300
AgsI	TTSAA	3 cut(s)	337, 634, 708
AhdI	GACNNNNNGTC	1 cut(s)	301
AjiI	CACGTC	2 cut(s)	223, 301
AjnI	CCWGG	2 cut(s)	264, 599
AluBI	AGCT	7 cut(s)	79, 190, 202, 259, 333, 437, 637
AluI	AGCT	7 cut(s)	79, 190, 202, 259, 333, 437, 637
Alw21I	GWGCWC	1 cut(s)	204
Alw26I	GTCTC	1 cut(s)	151
AlwI	GGATC	4 cut(s)	175, 188, 543, 659
AoxI	GGCC	3 cut(s)	162, 370, 580
ApeKI	GCWGC	2 cut(s)	318, 512
ArsI	GACNNNNNNTTYG	1 cut(s)	701
AspLEI	GCGC	1 cut(s)	65
AspS9I	GGNCC	2 cut(s)	268, 327
AsuC2I	CCSGG	1 cut(s)	178
AsuHPI	GGTGA	5 cut(s)	163, 196, 217, 407, 476
AvaII	GGWCC	2 cut(s)	268, 327
BamHI	GGATCC	1 cut(s)	180
BanII	GRGCYC	1 cut(s)	204
BauI	CACGAG	1 cut(s)	197
Bbv12I	GWGCWC	1 cut(s)	204
BbvCI	CCTCAGC	1 cut(s)	531
BbvI	GCAGC	2 cut(s)	305, 499
BccI	CCATC	6 cut(s)	29, 215, 296, 412, 418, 619
BceAI	ACGGC	2 cut(s)	46, 357
BcgI	CGANNNNNNTGC	2 cut(s)	22, 56
BciT130I	CCWGG	2 cut(s)	266, 601
BcnI	CCSGG	1 cut(s)	178
BcoDI	GTCTC	1 cut(s)	151
BfaI	CTAG	1 cut(s)	324
BisI	GCNGC	5 cut(s)	66, 69, 319, 348, 513
BlsI	GCNGC	5 cut(s)	67, 70, 320, 349, 514
Bme1390I	CCNGG	3 cut(s)	178, 266, 601
Bme18I	GGWCC	2 cut(s)	268, 327
BmeRI	GACNNNNNGTC	1 cut(s)	301
BmgBI	CACGTC	2 cut(s)	223, 301
BmgT120I	GGNCC	2 cut(s)	268, 327
BmiI	GGNNCC	1 cut(s)	182
BmrFI	CCNGG	3 cut(s)	178, 266, 601
BmrI	ACTGGG	1 cut(s)	271
BmsI	GCATC	4 cut(s)	111, 469, 499, 570
BmuI	ACTGGG	1 cut(s)	271
BpmI	CTGGAG	1 cut(s)	170
Bpu10I	CCTNAGC	1 cut(s)	531
BpuEI	CTTGAG	1 cut(s)	631
BpuMI	CCSGG	1 cut(s)	178
Bsa29I	ATCGAT	1 cut(s)	405
BsaBI	GATNNNNATC	1 cut(s)	663
BsaHI	GRCGYC	2 cut(s)	51, 252
BsaXI	ACNNNNNCTCC	2 cut(s)	107, 137
Bse1I	ACTGG	2 cut(s)	271, 277
Bse8I	GATNNNNATC	1 cut(s)	663
BseBI	CCWGG	2 cut(s)	266, 601
BseCI	ATCGAT	1 cut(s)	405
BseGI	GGATG	6 cut(s)	21, 192, 216, 288, 429, 595
BseJI	GATNNNNATC	1 cut(s)	663
BseMII	CTCAG	1 cut(s)	522
BseNI	ACTGG	2 cut(s)	271, 277
BseX3I	CGGCCG	1 cut(s)	370
BseXI	GCAGC	2 cut(s)	305, 499
BsgI	GTGCAG	1 cut(s)	304
Bsh1236I	CGCG	2 cut(s)	63, 347
Bsh1285I	CGRYCG	1 cut(s)	373
BshFI	GGCC	3 cut(s)	164, 372, 582
BshVI	ATCGAT	1 cut(s)	405
BsiEI	CGRYCG	1 cut(s)	373
BsiHKAI	GWGCWC	1 cut(s)	204
BsiSI	CCGG	2 cut(s)	178, 587
BslFI	GGGAC	3 cut(s)	38, 71, 259
BsmAI	GTCTC	1 cut(s)	151
BsmBI	CGTCTC	1 cut(s)	151
BsmFI	GGGAC	3 cut(s)	38, 71, 259
BsnI	GGCC	3 cut(s)	164, 372, 582
Bsp1286I	GDGCHC	1 cut(s)	204
Bsp143I	GATC	6 cut(s)	180, 312, 378, 402, 535, 664
BspACI	CCGC	9 cut(s)	66, 69, 130, 157, 174, 347, 350, 429, 443
BspANI	GGCC	3 cut(s)	164, 372, 582
BspCNI	CTCAG	1 cut(s)	523
BspDI	ATCGAT	1 cut(s)	405
BspFNI	CGCG	2 cut(s)	63, 347
BspLI	GGNNCC	1 cut(s)	182
BspPI	GGATC	4 cut(s)	175, 188, 543, 659
BspQI	GCTCTTC	1 cut(s)	266
BsrI	ACTGG	2 cut(s)	271, 277
BssMI	GATC	6 cut(s)	180, 312, 378, 402, 535, 664
BssNI	GRCGYC	2 cut(s)	51, 252
BssSI	CACGAG	1 cut(s)	197
Bst2BI	CACGAG	1 cut(s)	197
Bst2UI	CCWGG	2 cut(s)	266, 601
Bst4CI	ACNGT	3 cut(s)	154, 169, 395
Bst6I	CTCTTC	2 cut(s)	245, 266
BstACI	GRCGYC	2 cut(s)	51, 252
BstC8I	GCNNGC	2 cut(s)	584, 648
BstDEI	CTNAG	2 cut(s)	414, 531
BstF5I	GGATG	6 cut(s)	21, 192, 216, 288, 429, 595
BstFNI	CGCG	2 cut(s)	63, 347
BstHHI	GCGC	1 cut(s)	65
BstKTI	GATC	6 cut(s)	183, 315, 381, 405, 538, 667
BstMAI	GTCTC	1 cut(s)	151
BstMBI	GATC	6 cut(s)	180, 312, 378, 402, 535, 664
BstMCI	CGRYCG	1 cut(s)	373
BstMWI	GCNNNNNNNGC	1 cut(s)	643
BstNI	CCWGG	2 cut(s)	266, 601
BstSCI	CCNGG	3 cut(s)	176, 264, 599
BstUI	CGCG	2 cut(s)	63, 347
BstV1I	GCAGC	2 cut(s)	305, 499
BstX2I	RGATCY	1 cut(s)	180
BstYI	RGATCY	1 cut(s)	180
BstZI	CGGCCG	1 cut(s)	370
Bsu15I	ATCGAT	1 cut(s)	405
BsuRI	GGCC	3 cut(s)	164, 372, 582
BsuTUI	ATCGAT	1 cut(s)	405
BtrI	CACGTC	2 cut(s)	223, 301
BtsCI	GGATG	6 cut(s)	21, 192, 216, 288, 429, 595
BtsIMutI	CAGTG	1 cut(s)	391
Cac8I	GCNNGC	2 cut(s)	584, 648
CfoI	GCGC	1 cut(s)	65
Cfr13I	GGNCC	2 cut(s)	268, 327
ClaI	ATCGAT	1 cut(s)	405
Csp6I	GTAC	1 cut(s)	411
CviQI	GTAC	1 cut(s)	411
DdeI	CTNAG	2 cut(s)	414, 531
DpnI	GATC	6 cut(s)	182, 314, 380, 404, 537, 666
DpnII	GATC	6 cut(s)	180, 312, 378, 402, 535, 664
DrdI	GACNNNNNNGTC	2 cut(s)	104, 221
DriI	GACNNNNNGTC	1 cut(s)	301
DseDI	GACNNNNNNGTC	2 cut(s)	104, 221
EaeI	YGGCCR	1 cut(s)	370
EagI	CGGCCG	1 cut(s)	370
Eam1104I	CTCTTC	2 cut(s)	245, 266
Eam1105I	GACNNNNNGTC	1 cut(s)	301
EarI	CTCTTC	2 cut(s)	245, 266
EciI	GGCGGA	2 cut(s)	119, 365
Ecl136II	GAGCTC	1 cut(s)	202
EclXI	CGGCCG	1 cut(s)	370
Eco24I	GRGCYC	1 cut(s)	204
Eco47I	GGWCC	2 cut(s)	268, 327
Eco52I	CGGCCG	1 cut(s)	370
Eco53kI	GAGCTC	1 cut(s)	202
Eco57I	CTGAAG	2 cut(s)	367, 698
EcoICRI	GAGCTC	1 cut(s)	202
EcoRII	CCWGG	2 cut(s)	264, 599
EcoT22I	ATGCAT	1 cut(s)	484
EcoT38I	GRGCYC	1 cut(s)	204
Esp3I	CGTCTC	1 cut(s)	151
FaiI	YATR	9 cut(s)	311, 452, 470, 519, 521, 546, 696, 716, 724
FaqI	GGGAC	3 cut(s)	38, 71, 259
FauI	CCCGC	2 cut(s)	422, 450
Fnu4HI	GCNGC	5 cut(s)	66, 69, 319, 348, 513
FokI	GGATG	6 cut(s)	8, 179, 203, 275, 436, 602
FriOI	GRGCYC	1 cut(s)	204
Fsp4HI	GCNGC	5 cut(s)	66, 69, 319, 348, 513
FspBI	CTAG	1 cut(s)	324
GlaI	GCGC	1 cut(s)	64
GluI	GCNGC	5 cut(s)	66, 69, 319, 348, 513
GsuI	CTGGAG	1 cut(s)	170
HaeIII	GGCC	3 cut(s)	164, 372, 582
HapII	CCGG	2 cut(s)	178, 587
HhaI	GCGC	1 cut(s)	65
Hin1I	GRCGYC	2 cut(s)	51, 252
Hin6I	GCGC	1 cut(s)	63
HinP1I	GCGC	1 cut(s)	63
HindIII	AAGCTT	1 cut(s)	635
HpaII	CCGG	2 cut(s)	178, 587
HphI	GGTGA	5 cut(s)	163, 196, 217, 407, 476
Hpy188I	TCNGA	2 cut(s)	283, 378
Hpy188III	TCNNGA	1 cut(s)	610
Hpy99I	CGWCG	8 cut(s)	32, 53, 254, 299, 302, 344, 347, 395
HpyAV	CCTTC	1 cut(s)	55
HpyCH4III	ACNGT	3 cut(s)	154, 169, 395
HpyCH4IV	ACGT	7 cut(s)	51, 84, 144, 222, 252, 300, 339
HpyCH4V	TGCA	4 cut(s)	321, 472, 482, 561
HpyF10VI	GCNNNNNNNGC	1 cut(s)	643
HpyF3I	CTNAG	2 cut(s)	414, 531
HpySE526I	ACGT	7 cut(s)	51, 84, 144, 222, 252, 300, 339
Hsp92I	GRCGYC	2 cut(s)	51, 252
HspAI	GCGC	1 cut(s)	63
Kzo9I	GATC	6 cut(s)	180, 312, 378, 402, 535, 664
LguI	GCTCTTC	1 cut(s)	266
Lsp1109I	GCAGC	2 cut(s)	305, 499
LweI	GCATC	4 cut(s)	111, 469, 499, 570
MaeI	CTAG	1 cut(s)	324
MaeII	ACGT	7 cut(s)	51, 84, 144, 222, 252, 300, 339
MaeIII	GTNAC	5 cut(s)	169, 223, 233, 386, 568
MalI	GATC	6 cut(s)	182, 314, 380, 404, 537, 666
MboI	GATC	6 cut(s)	180, 312, 378, 402, 535, 664
MboII	GAAGA	6 cut(s)	232, 253, 373, 628, 634, 691
MflI	RGATCY	1 cut(s)	180
MhlI	GDGCHC	1 cut(s)	204
MluCI	AATT	1 cut(s)	629
Mph1103I	ATGCAT	1 cut(s)	484
MslI	CAYNNNNRTG	1 cut(s)	566
MspI	CCGG	2 cut(s)	178, 587
MspR9I	CCNGG	3 cut(s)	178, 266, 601
MvaI	CCWGG	2 cut(s)	266, 601
MvnI	CGCG	2 cut(s)	63, 347
MwoI	GCNNNNNNNGC	1 cut(s)	643
NciI	CCSGG	1 cut(s)	178
NdeII	GATC	6 cut(s)	180, 312, 378, 402, 535, 664
NlaIV	GGNNCC	1 cut(s)	182
NmuCI	GTSAC	5 cut(s)	169, 223, 233, 386, 568
NsiI	ATGCAT	1 cut(s)	484
PciSI	GCTCTTC	1 cut(s)	266
PcsI	WCGNNNNNNNCGW	3 cut(s)	48, 102, 150
PfoI	TCCNGGA	1 cut(s)	264
PkrI	GCNGC	5 cut(s)	67, 70, 320, 349, 514
Psp124BI	GAGCTC	1 cut(s)	204
Psp6I	CCWGG	2 cut(s)	264, 599
PspGI	CCWGG	2 cut(s)	264, 599
PspN4I	GGNNCC	1 cut(s)	182
PspPI	GGNCC	2 cut(s)	268, 327
PsuI	RGATCY	1 cut(s)	180
RsaI	GTAC	1 cut(s)	412
RsaNI	GTAC	1 cut(s)	411
RseI	CAYNNNNRTG	1 cut(s)	566
SacI	GAGCTC	1 cut(s)	204
SapI	GCTCTTC	1 cut(s)	266
SatI	GCNGC	5 cut(s)	66, 69, 319, 348, 513
Sau3AI	GATC	6 cut(s)	180, 312, 378, 402, 535, 664
Sau96I	GGNCC	2 cut(s)	268, 327
ScrFI	CCNGG	3 cut(s)	178, 266, 601
SduI	GDGCHC	1 cut(s)	204
SfaNI	GCATC	4 cut(s)	111, 469, 499, 570
SinI	GGWCC	2 cut(s)	268, 327
SmiMI	CAYNNNNRTG	1 cut(s)	566
SmlI	CTYRAG	1 cut(s)	610
SmoI	CTYRAG	1 cut(s)	610
Sse9I	AATT	1 cut(s)	629
SsiI	CCGC	9 cut(s)	66, 69, 130, 157, 174, 347, 350, 429, 443
SspMI	CTAG	1 cut(s)	324
SstI	GAGCTC	1 cut(s)	204
StyD4I	CCNGG	3 cut(s)	176, 264, 599
TaaI	ACNGT	3 cut(s)	154, 169, 395
TaiI	ACGT	7 cut(s)	54, 87, 147, 225, 255, 303, 342
TaqI	TCGA	5 cut(s)	27, 48, 96, 294, 405
TasI	AATT	1 cut(s)	629
TatI	WGTACW	1 cut(s)	410
TauI	GCSGC	3 cut(s)	68, 71, 350
TscAI	CASTG	1 cut(s)	391
TseFI	GTSAC	5 cut(s)	169, 223, 233, 386, 568
TseI	GCWGC	2 cut(s)	318, 512
Tsp45I	GTSAC	5 cut(s)	169, 223, 233, 386, 568
TspDTI	ATGAA	2 cut(s)	478, 635
TspRI	CASTG	1 cut(s)	391
VpaK11BI	GGWCC	2 cut(s)	268, 327
XspI	CTAG	1 cut(s)	324
ZraI	GACGTC	2 cut(s)	52, 253
Zsp2I	ATGCAT	1 cut(s)	484

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.