FvH4_1g22710

Component of the DNA topoisomerase VI involved in chromatin organization and progression of endoreduplication cycles. Relaxes both positive and negative superturns and exhibits a strong decatenase activity

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb1
Physical Location & Seq
Reverse (-)
14682993 .. 14688087
5095 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_1g22710.t2

Sequence Viewer

Length: 1269 bp
ATGGCCGACAAGAAGAAGAAGCGCCGCCGCGCCGACCCAGCCTCCGACGACGACTCCCTCCCCTTCAAGAACATTCTCAAACCCGACGCCTCCATCCTCCACTCCGTCCACAAACTCACCGACTCTCTCCGCTCCTCCGCCGCCGCCTCCTCCTCCAAAACCCTAACCCTCGCCGACCTCTCCATCGCCTCCTGCCGCGAAGTCCGCGAACTCCCGATCTCCTCCGTCCAGTCGGAAATCGAGTCCCTCATGCTCAAAGTCCTCCACTCCATCCTCGACGGCCACGGCTTCGCCTTCGACGTCCCCTCACGCGCTGCCGCCAACCAGCTCTACGTCCCGGAGCTCGACCGCATCGTCCTCAAGGACAAATCCTCCCTCCGCCCCTACGCCAACGTCTCCACCGTCCGCAAAGCCACCATCACCGCCCGGATTCTCCAACTCATCCACGAGCTCACCATCAAAGACATCCACGTCACCAAGCGTGACCTCTTCTACACTGACGTCAAGCTCTTCCAGGACCAGTCCCAGTCCGATACCATCCTCGACGACGTGTCGTGTATGATCGGCTGCACCAGGTCATCCCTCAACGTCGTCGCCGCCGAGAAAGGAGTGGTGGTTGGCCGTTTGATATTCAGCGACGACGGCGATGTGATTGACTGTACTAAGATGGGGATGGGAGGGAAAGCTATCCCGCCGAATATAAACAGAGTTGGTGATATGCAGAGTGATGCATTGTTCATCTTGCTTGTTGAGAAAGATGCTGCTTATATGAGATTGGCCGAGGATCGGTTCTATAATCGGTTCCCTTGCATTATTGTGACCGCCAAGGGGCAGCCGGATGTCGCTACAAGGCTGTTCTTGAGGAAGATGAAGATGGAATTGAAGCTTCCTGTGCTGGCATTGGTGGACAGTGATCCTTATGGGCTGAAGATTCTGTCTGTTTATGGGTGTGGATCGAAGAATATGTCGTATGACAGTGCTAATTTGACCACGCCGGATATTAAGTGGCTGGGAATTAGGCCGAGCGATTTGGATAAGTATAAGATACCGGAGCAGTGTAGGTTGCCGATGACGGATCAGGATATTAAGACAGGGAAGGATATGTTGGAGGAGGATTTTGTTAAGAAGAATCCGAAATGGGTTGAGGAGCTGACTCTGATGGTGAAGAGTAAGCAGAAGGCAGAAATTCAGGCATTGAGCAATTTTGGGTTCCAGTACTTGTCGGAGGTGTATTTGCCCCTCAAACTTCAAGAAGAGGACTGGATATGA

Protein Analysis

423

Amino Acids

47.31

Weight (kDa)

7.55

Isoelectric Point (pI)

52.72

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
TP6A_N PF04406 136 - 197 8.4e-22 Type IIB DNA topoisomerase
TOP6A-Spo11_Toprim PF21180 246 - 416 1.6e-68 Topoisomerase 6 subunit A/Spo11, Toprim domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 2 cut(s) 353, 470
AatII GACGTC 2 cut(s) 303, 504
AccBSI CCGCTC 1 cut(s) 132
AccII CGCG 4 cut(s) 30, 198, 207, 312
AclWI GGATC 4 cut(s) 792, 908, 961, 1083
AcoI YGGCCR 4 cut(s) 3, 280, 619, 777
AcsI RAATTY 1 cut(s) 1185
AcuI CTGAAG 1 cut(s) 947
AcyI GRCGYC 3 cut(s) 87, 300, 501
AfaI GTAC 2 cut(s) 661, 1217
AfiI CCNNNNNNNGG 2 cut(s) 786, 828
AflIII ACRYGT 1 cut(s) 549
AgsI TTSAA 3 cut(s) 67, 883, 1250
AhdI GACNNNNNGTC 1 cut(s) 550
AjiI CACGTC 2 cut(s) 472, 550
AjnI CCWGG 2 cut(s) 513, 572
AjuI GAANNNNNNNTTGG 2 cut(s) 1088, 1120
AluBI AGCT 7 cut(s) 328, 343, 451, 508, 686, 886, 1150
AluI AGCT 7 cut(s) 328, 343, 451, 508, 686, 886, 1150
Alw21I GWGCWC 2 cut(s) 345, 453
Alw26I GTCTC 1 cut(s) 400
AlwI GGATC 4 cut(s) 792, 908, 961, 1083
AoxI GGCC 5 cut(s) 3, 280, 619, 777, 1019
ApeKI GCWGC 4 cut(s) 314, 567, 761, 832
ApoI RAATTY 1 cut(s) 1185
ArsI GACNNNNNNTTYG 2 cut(s) 950, 982
AspLEI GCGC 3 cut(s) 24, 32, 314
AspS9I GGNCC 1 cut(s) 517
AsuC2I CCSGG 2 cut(s) 338, 427
AsuHPI GGTGA 6 cut(s) 109, 412, 445, 466, 725, 1174
AvaII GGWCC 1 cut(s) 517
BanII GRGCYC 2 cut(s) 345, 453
BauI CACGAG 1 cut(s) 446
Bbv12I GWGCWC 2 cut(s) 345, 453
BbvI GCAGC 4 cut(s) 301, 554, 748, 844
BceAI ACGGC 4 cut(s) 295, 301, 606, 658
BciT130I CCWGG 2 cut(s) 515, 574
BcnI CCSGG 2 cut(s) 338, 427
BcoDI GTCTC 1 cut(s) 400
BfoI RGCGCY 1 cut(s) 25
BmcAI AGTACT 1 cut(s) 1217
Bme1390I CCNGG 4 cut(s) 338, 427, 515, 574
Bme18I GGWCC 1 cut(s) 517
BmeRI GACNNNNNGTC 1 cut(s) 550
BmgBI CACGTC 2 cut(s) 472, 550
BmgT120I GGNCC 1 cut(s) 517
BmiI GGNNCC 2 cut(s) 803, 1211
BmrFI CCNGG 4 cut(s) 338, 427, 515, 574
BmrI ACTGGG 1 cut(s) 520
BmsI GCATC 3 cut(s) 360, 718, 748
BmuI ACTGGG 1 cut(s) 520
BpuEI CTTGAG 2 cut(s) 344, 880
BpuMI CCSGG 2 cut(s) 338, 427
BsaHI GRCGYC 3 cut(s) 87, 300, 501
BsaJI CCNNGG 3 cut(s) 283, 780, 825
BsaWI WCCGGW 1 cut(s) 1048
BsaXI ACNNNNNCTCC 8 cut(s) 26, 38, 56, 68, 356, 386, 600, 630
Bsc4I CCNNNNNNNGG 2 cut(s) 786, 828
Bse1I ACTGG 5 cut(s) 229, 520, 526, 1213, 1265
BseBI CCWGG 2 cut(s) 515, 574
BseDI CCNNGG 3 cut(s) 283, 780, 825
BseGI GGATG 8 cut(s) 93, 270, 441, 465, 537, 578, 678, 844
BseLI CCNNNNNNNGG 2 cut(s) 786, 828
BseNI ACTGG 5 cut(s) 229, 520, 526, 1213, 1265
BseRI GAGGAG 6 cut(s) 124, 139, 142, 211, 1124, 1160
BseXI GCAGC 4 cut(s) 301, 554, 748, 844
BseYI CCCAGC 2 cut(s) 37, 1009
BsgI GTGCAG 1 cut(s) 553
Bsh1236I CGCG 4 cut(s) 30, 198, 207, 312
Bsh1285I CGRYCG 1 cut(s) 349
BshFI GGCC 5 cut(s) 5, 282, 621, 779, 1021
BsiEI CGRYCG 1 cut(s) 349
BsiHKAI GWGCWC 2 cut(s) 345, 453
BsiSI CCGG 5 cut(s) 338, 427, 836, 995, 1049
BslFI GGGAC 4 cut(s) 229, 287, 320, 508
BslI CCNNNNNNNGG 2 cut(s) 786, 828
BsmAI GTCTC 1 cut(s) 400
BsmBI CGTCTC 1 cut(s) 400
BsmFI GGGAC 4 cut(s) 229, 287, 320, 508
BsnI GGCC 5 cut(s) 5, 282, 621, 779, 1021
Bsp1286I GDGCHC 2 cut(s) 345, 453
Bsp143I GATC 6 cut(s) 216, 561, 784, 913, 953, 1075
BspANI GGCC 5 cut(s) 5, 282, 621, 779, 1021
BspFNI CGCG 4 cut(s) 30, 198, 207, 312
BspLI GGNNCC 2 cut(s) 803, 1211
BspPI GGATC 4 cut(s) 792, 908, 961, 1083
BspQI GCTCTTC 1 cut(s) 515
BsrBI CCGCTC 1 cut(s) 132
BsrI ACTGG 5 cut(s) 229, 520, 526, 1213, 1265
BssECI CCNNGG 3 cut(s) 283, 780, 825
BssMI GATC 6 cut(s) 216, 561, 784, 913, 953, 1075
BssNI GRCGYC 3 cut(s) 87, 300, 501
BssSI CACGAG 1 cut(s) 446
BssT1I CCWWGG 1 cut(s) 825
Bst2BI CACGAG 1 cut(s) 446
Bst2UI CCWGG 2 cut(s) 515, 574
Bst4CI ACNGT 4 cut(s) 403, 659, 911, 977
Bst6I CTCTTC 4 cut(s) 494, 515, 1160, 1248
BstACI GRCGYC 3 cut(s) 87, 300, 501
BstC8I GCNNGC 1 cut(s) 897
BstDEI CTNAG 1 cut(s) 663
BstDSI CCRYGG 1 cut(s) 283
BstF5I GGATG 8 cut(s) 93, 270, 441, 465, 537, 578, 678, 844
BstFNI CGCG 4 cut(s) 30, 198, 207, 312
BstH2I RGCGCY 1 cut(s) 25
BstHHI GCGC 3 cut(s) 24, 32, 314
BstKTI GATC 6 cut(s) 219, 564, 787, 916, 956, 1078
BstMAI GTCTC 1 cut(s) 400
BstMBI GATC 6 cut(s) 216, 561, 784, 913, 953, 1075
BstMCI CGRYCG 1 cut(s) 349
BstMWI GCNNNNNNNGC 4 cut(s) 38, 204, 642, 892
BstNI CCWGG 2 cut(s) 515, 574
BstSCI CCNGG 4 cut(s) 336, 425, 513, 572
BstUI CGCG 4 cut(s) 30, 198, 207, 312
BstV1I GCAGC 4 cut(s) 301, 554, 748, 844
BsuRI GGCC 5 cut(s) 5, 282, 621, 779, 1021
BtgI CCRYGG 1 cut(s) 283
BtgZI GCGATG 2 cut(s) 169, 660
BtrI CACGTC 2 cut(s) 472, 550
BtsCI GGATG 8 cut(s) 93, 270, 441, 465, 537, 578, 678, 844
BtsI GCAGTG 1 cut(s) 1061
BtsIMutI CAGTG 4 cut(s) 495, 916, 982, 1061
Cac8I GCNNGC 1 cut(s) 897
CfoI GCGC 3 cut(s) 24, 32, 314
Cfr13I GGNCC 1 cut(s) 517
CseI GACGC 1 cut(s) 95
CsiI ACCWGGT 1 cut(s) 572
Csp6I GTAC 2 cut(s) 660, 1216
CviAII CATG 1 cut(s) 250
CviQI GTAC 2 cut(s) 660, 1216
DdeI CTNAG 1 cut(s) 663
DpnI GATC 6 cut(s) 218, 563, 786, 915, 955, 1077
DpnII GATC 6 cut(s) 216, 561, 784, 913, 953, 1075
DrdI GACNNNNNNGTC 2 cut(s) 353, 470
DriI GACNNNNNGTC 1 cut(s) 550
DseDI GACNNNNNNGTC 2 cut(s) 353, 470
EaeI YGGCCR 4 cut(s) 3, 280, 619, 777
Eam1104I CTCTTC 4 cut(s) 494, 515, 1160, 1248
Eam1105I GACNNNNNGTC 1 cut(s) 550
EarI CTCTTC 4 cut(s) 494, 515, 1160, 1248
EciI GGCGGA 2 cut(s) 127, 368
Ecl136II GAGCTC 2 cut(s) 343, 451
Eco130I CCWWGG 1 cut(s) 825
Eco24I GRGCYC 2 cut(s) 345, 453
Eco47I GGWCC 1 cut(s) 517
Eco53kI GAGCTC 2 cut(s) 343, 451
Eco57I CTGAAG 1 cut(s) 947
EcoICRI GAGCTC 2 cut(s) 343, 451
EcoRII CCWGG 2 cut(s) 513, 572
EcoT14I CCWWGG 1 cut(s) 825
EcoT22I ATGCAT 1 cut(s) 733
EcoT38I GRGCYC 2 cut(s) 345, 453
ErhI CCWWGG 1 cut(s) 825
Esp3I CGTCTC 1 cut(s) 400
FaeI CATG 1 cut(s) 253
FaqI GGGAC 4 cut(s) 229, 287, 320, 508
FatI CATG 1 cut(s) 249
FauI CCCGC 1 cut(s) 699
FokI GGATG 8 cut(s) 80, 257, 428, 452, 524, 565, 685, 851
FriOI GRGCYC 2 cut(s) 345, 453
GlaI GCGC 3 cut(s) 23, 31, 313
GsaI CCCAGC 2 cut(s) 41, 1013
HaeII RGCGCY 1 cut(s) 25
HaeIII GGCC 5 cut(s) 5, 282, 621, 779, 1021
HapII CCGG 5 cut(s) 338, 427, 836, 995, 1049
HgaI GACGC 1 cut(s) 95
HhaI GCGC 3 cut(s) 24, 32, 314
Hin1I GRCGYC 3 cut(s) 87, 300, 501
Hin1II CATG 1 cut(s) 253
Hin6I GCGC 3 cut(s) 22, 30, 312
HinP1I GCGC 3 cut(s) 22, 30, 312
HindIII AAGCTT 1 cut(s) 884
HinfI GANTC 7 cut(s) 53, 122, 242, 430, 931, 1129, 1153
HpaII CCGG 5 cut(s) 338, 427, 836, 995, 1049
HphI GGTGA 6 cut(s) 109, 412, 445, 466, 725, 1174
Hpy166II GTNNAC 2 cut(s) 109, 907
Hpy188I TCNGA 6 cut(s) 46, 235, 532, 1134, 1158, 1225
Hpy188III TCNNGA 5 cut(s) 67, 214, 859, 1079, 1250
Hpy8I GTNNAC 2 cut(s) 109, 907
HpyAV CCTTC 4 cut(s) 73, 304, 1090, 1171
HpyCH4III ACNGT 4 cut(s) 403, 659, 911, 977
HpyCH4IV ACGT 7 cut(s) 300, 333, 393, 471, 501, 549, 588
HpyCH4V TGCA 4 cut(s) 570, 721, 731, 810
HpyF10VI GCNNNNNNNGC 4 cut(s) 38, 204, 642, 892
HpyF3I CTNAG 1 cut(s) 663
HpySE526I ACGT 7 cut(s) 300, 333, 393, 471, 501, 549, 588
Hsp92I GRCGYC 3 cut(s) 87, 300, 501
Hsp92II CATG 1 cut(s) 253
HspAI GCGC 3 cut(s) 22, 30, 312
Kzo9I GATC 6 cut(s) 216, 561, 784, 913, 953, 1075
LguI GCTCTTC 1 cut(s) 515
LmnI GCTCC 4 cut(s) 137, 340, 1051, 1147
Lsp1109I GCAGC 4 cut(s) 301, 554, 748, 844
LweI GCATC 3 cut(s) 360, 718, 748
MabI ACCWGGT 1 cut(s) 572
MaeII ACGT 7 cut(s) 300, 333, 393, 471, 501, 549, 588
MaeIII GTNAC 3 cut(s) 472, 482, 817
MalI GATC 6 cut(s) 218, 563, 786, 915, 955, 1077
MbiI CCGCTC 1 cut(s) 132
MboI GATC 6 cut(s) 216, 561, 784, 913, 953, 1075
MhlI GDGCHC 2 cut(s) 345, 453
MluCI AATT 5 cut(s) 878, 982, 1014, 1185, 1201
MlyI GAGTC 4 cut(s) 47, 116, 251, 1147
MmeI TCCRAC 5 cut(s) 69, 213, 460, 1086, 1203
Mph1103I ATGCAT 1 cut(s) 733
MseI TTAA 3 cut(s) 1002, 1086, 1122
MslI CAYNNNNRTG 1 cut(s) 815
MspI CCGG 5 cut(s) 338, 427, 836, 995, 1049
MspR9I CCNGG 4 cut(s) 338, 427, 515, 574
MvaI CCWGG 2 cut(s) 515, 574
MvnI CGCG 4 cut(s) 30, 198, 207, 312
MwoI GCNNNNNNNGC 4 cut(s) 38, 204, 642, 892
NciI CCSGG 2 cut(s) 338, 427
NdeII GATC 6 cut(s) 216, 561, 784, 913, 953, 1075
NlaIII CATG 1 cut(s) 253
NlaIV GGNNCC 2 cut(s) 803, 1211
NmeAIII GCCGAG 3 cut(s) 625, 805, 1047
NmuCI GTSAC 3 cut(s) 472, 482, 817
NsiI ATGCAT 1 cut(s) 733
PciSI GCTCTTC 1 cut(s) 515
PcsI WCGNNNNNNNCGW 4 cut(s) 297, 351, 399, 597
PfeI GAWTC 3 cut(s) 430, 931, 1129
PfoI TCCNGGA 2 cut(s) 336, 513
PleI GAGTC 4 cut(s) 47, 116, 250, 1147
PpsI GAGTC 4 cut(s) 47, 116, 250, 1147
Psp124BI GAGCTC 2 cut(s) 345, 453
Psp6I CCWGG 2 cut(s) 513, 572
PspFI CCCAGC 2 cut(s) 37, 1009
PspGI CCWGG 2 cut(s) 513, 572
PspN4I GGNNCC 2 cut(s) 803, 1211
PspPI GGNCC 1 cut(s) 517
RsaI GTAC 2 cut(s) 661, 1217
RsaNI GTAC 2 cut(s) 660, 1216
RseI CAYNNNNRTG 1 cut(s) 815
SacI GAGCTC 2 cut(s) 345, 453
SapI GCTCTTC 1 cut(s) 515
SaqAI TTAA 3 cut(s) 1002, 1086, 1122
Sau3AI GATC 6 cut(s) 216, 561, 784, 913, 953, 1075
Sau96I GGNCC 1 cut(s) 517
ScaI AGTACT 1 cut(s) 1217
SchI GAGTC 4 cut(s) 47, 116, 251, 1147
ScrFI CCNGG 4 cut(s) 338, 427, 515, 574
SduI GDGCHC 2 cut(s) 345, 453
SexAI ACCWGGT 1 cut(s) 572
SfaNI GCATC 3 cut(s) 360, 718, 748
SinI GGWCC 1 cut(s) 517
SmiMI CAYNNNNRTG 1 cut(s) 815
SmlI CTYRAG 2 cut(s) 359, 859
SmoI CTYRAG 2 cut(s) 359, 859
Sse9I AATT 5 cut(s) 878, 982, 1014, 1185, 1201
SstI GAGCTC 2 cut(s) 345, 453
StyD4I CCNGG 4 cut(s) 336, 425, 513, 572
StyI CCWWGG 1 cut(s) 825
TaaI ACNGT 4 cut(s) 403, 659, 911, 977
TaiI ACGT 7 cut(s) 303, 336, 396, 474, 504, 552, 591
TaqI TCGA 6 cut(s) 240, 276, 297, 345, 543, 956
TasI AATT 5 cut(s) 878, 982, 1014, 1185, 1201
TatI WGTACW 2 cut(s) 659, 1215
TauI GCSGC 7 cut(s) 27, 30, 143, 146, 198, 320, 599
TfiI GAWTC 3 cut(s) 430, 931, 1129
Tru1I TTAA 3 cut(s) 1002, 1086, 1122
Tru9I TTAA 3 cut(s) 1002, 1086, 1122
TscAI CASTG 4 cut(s) 502, 916, 982, 1061
TseFI GTSAC 3 cut(s) 472, 482, 817
TseI GCWGC 4 cut(s) 314, 567, 761, 832
Tsp45I GTSAC 3 cut(s) 472, 482, 817
TspDTI ATGAA 2 cut(s) 727, 884
TspGWI ACGGA 3 cut(s) 94, 214, 1088
TspRI CASTG 4 cut(s) 502, 916, 982, 1061
VpaK11BI GGWCC 1 cut(s) 517
XapI RAATTY 1 cut(s) 1185
ZraI GACGTC 2 cut(s) 301, 502
ZrmI AGTACT 1 cut(s) 1217
Zsp2I ATGCAT 1 cut(s) 733
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.