Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr04

Orthogroup ID

OG0006264

Physical Location & Seq

Genomic Coordinates Forward (+)

19998052 .. 20000091

Gene Structure 2040 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD04G1113900.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1266 bp

ATGGCGGACAAGAAAGGGAAACGCCGTCGAACCGACCCGAGCTCCGACGATGAAACCCACCATCCCAACAAGAAGGTCCCCAAGAAAGACACAATCATCAACAAAACCCTCGAGAACCTCCGCTCCACCACCGCCGCCGCCTCCTCCTCCAAATCCCTAAGCCTGGCCGACCTCCCCATCTCCTCCACCTGCCGCGAGGTCCGCGAACTCGACCACGAGTCTGTACAGTACGAGATCGAACTCCAAATGCTCAAGGTCATCAAATCCATCCTCGACGGCAACGGCTTCACATTCCAGGTCCCCTCACGCGCCGCCGCCAACCAGCTGTACATCCCGGAGCTCGACCGCATCGTGTTGAAGGACAAGACTTCCCTTCGCCCGTACGCCAACGTCTCCACCGTCCGCAAGGCCACCATCACAGCTCGTGTTCTGCAGCTGATTCACCAGCTCTGCCTCAAGGACATCCACGTCACCAAGCGTGACCTTTTCTACACCGATGTCAAGCTCTTTCAGGACCAGAATCAGTCCGATTCGGTCCTCGATGATGCGGCCTGTATGGTTGGCTGTACGCGCTCTAGTCTCAATGTGATTGCCTCAGAGAAAGGTGTAGTTGTGGGGAGGCTTATATTCAGCGACAATGGCGATATGATTGATTGCACAAAAATGGGAATGGGCGGAAAAGCCATTCCGCCCAATATCCGCAAAGTTGGGGATGTGCAGAGTGATGCATTGTTCATACTGCTGGTTGAGAAGGATGCGGCTTTTATTCGATTGTCTGAGGATCGGTTTTACAATAGGTTTCCGTGTATTATCCTGACTGCGAAGGGGCAACCTGATGTAGCCACTAGACTCTTTTTGAGGAAATTGAAGCTTGAATTGAAGCTACCGGTGCTCGCCCTTGTGGACAGTGATCCATATGGCCTGAAGATTTTATCGGTTTATGGTTGTGGGTCGAAGAACATGTCATACGACAGTGCGAATTTGACCACACCGGATATCAAATGGTTGGGGATACGGCCGAGTGATTTGGACAAGTACAAAATTCCAGAGCAGTGTAGGTTGACGATGACAGATCAGGATATCAAAACAGGGAAAGAAATGTTGGAGGAAGATTTTGTGAAGAAGAATCCAAAATGGGTTGAGGAGCTGACTCTTATGGTGAAGACCAAGCAGAAAGCAGAGATTCAGGCTCTGAGCGCATTTGGCTTTCAATATCTGACTCAGGTTTACTTGCCGCTAAAACTGCAGGAGCAGGATTGGATATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000228 GO:0000280 GO:0000706 GO:0000729 GO:0001708 GO:0003674 GO:0003676 GO:0003677 GO:0003824 GO:0003916 GO:0003918 GO:0004518 GO:0004519 GO:0004520 GO:0004536 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005694 GO:0006139 GO:0006259 GO:0006281 GO:0006302 GO:0006310 GO:0006725 GO:0006807 GO:0006950 GO:0006974 GO:0006996 GO:0007049 GO:0007127 GO:0007131 GO:0008094 GO:0008150 GO:0008152 GO:0008544 GO:0009888 GO:0009913 GO:0009957 GO:0009987 GO:0016043 GO:0016462 GO:0016787 GO:0016788 GO:0016817 GO:0016818 GO:0016853 GO:0016887 GO:0016889 GO:0016894 GO:0017111 GO:0022402 GO:0022414 GO:0030154 GO:0030855 GO:0031974 GO:0031981 GO:0032502 GO:0033554 GO:0034641 GO:0035825 GO:0042138 GO:0042623 GO:0042802 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044237 GO:0044238 GO:0044260 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0045165 GO:0046483 GO:0048285 GO:0048856 GO:0048869 GO:0050896 GO:0051321 GO:0051716 GO:0060429 GO:0061505 GO:0061982 GO:0070013 GO:0071704 GO:0071840 GO:0090304 GO:0090305 GO:0097159 GO:0140013 GO:0140097 GO:1901360 GO:1901363 GO:1903046

KEGG Pathways

Metabolic & Signaling

ko04113 map04113

Pfam Domains

Protein Families

TP6A_N

Protein Analysis

422

Amino Acids

47.48

Weight (kDa)

8.79

Isoelectric Point (pI)

42.88

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
TP6A_N	PF04406	135 - 196	1.3e-21	Type IIB DNA topoisomerase
TOP6A-Spo11_Toprim	PF21180	245 - 415	4.8e-67	Topoisomerase 6 subunit A/Spo11, Toprim domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0006264)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G02820
fragaria_vesca	FvH4_1g22710 FvH4_1g22710 FvH4_1g22710 FvH4_1g22710 FvH4_2g03881 FvH4_6g05151
malus_domestica	MD04G1113900.v1.1
prunus_persica	Prupe.6G243200_v2.0.a1
pyrus_communis	pycom04g10130
rosa_chinensis	RchiOBHm_Chr2g0103111 RchiOBHm_Chr2g0116961 RchiOBHm_Chr3g0453711
rosa_laevigata	RLG00000018316
rosa_multiflora	Rmu_sc0003556.1_g000009 Rmu_sc0011969.1_g000014 Rmu_ssc0000238.1_g000021 Rmu_ssc0000238.1_g000022
rosa_roxburghii	Rroxscaffold_2G00126860 Rroxscaffold_6G00430630
rosa_rugosa	Rorug02G0209000.1
rosa_samantha	Rh2AG265100 Rh2BG276800 Rh2DG272500 Rh2DG291500
rosa_wichuraiana	Rw2G020900 Rw3G004140

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	197
AasI	GACNNNNNNGTC	1 cut(s)	467
Acc36I	ACCTGC	1 cut(s)	197
AccBSI	CCGCTC	1 cut(s)	123
AccII	CGCG	4 cut(s)	195, 204, 309, 571
AclWI	GGATC	2 cut(s)	789, 905
AcoI	YGGCCR	2 cut(s)	165, 1016
AcsI	RAATTY	2 cut(s)	979, 1041
AcuI	CTGAAG	1 cut(s)	944
AfaI	GTAC	6 cut(s)	225, 230, 329, 383, 568, 1037
AfiI	CCNNNNNNNGG	1 cut(s)	163
AflIII	ACRYGT	1 cut(s)	960
AgeI	ACCGGT	1 cut(s)	886
AgsI	TTSAA	5 cut(s)	358, 868, 875, 880, 1211
AhdI	GACNNNNNGTC	1 cut(s)	217
AjiI	CACGTC	1 cut(s)	469
AjnI	CCWGG	2 cut(s)	162, 294
AjuI	GAANNNNNNNTTGG	2 cut(s)	1085, 1117
AloI	GAACNNNNNNTCC	2 cut(s)	107, 139
Alw21I	GWGCWC	3 cut(s)	44, 342, 894
Alw26I	GTCTC	2 cut(s)	397, 584
AlwI	GGATC	2 cut(s)	789, 905
AlwNI	CAGNNNCTG	1 cut(s)	1192
Ama87I	CYCGRG	2 cut(s)	37, 110
AoxI	GGCC	5 cut(s)	165, 408, 549, 919, 1016
ApeKI	GCWGC	1 cut(s)	433
ApoI	RAATTY	2 cut(s)	979, 1041
ArsI	GACNNNNNNTTYG	2 cut(s)	947, 979
AsiGI	ACCGGT	1 cut(s)	886
AspLEI	GCGC	3 cut(s)	311, 573, 1199
AspS9I	GGNCC	5 cut(s)	76, 199, 298, 514, 535
AsuC2I	CCSGG	1 cut(s)	335
AsuHPI	GGTGA	3 cut(s)	434, 463, 1171
AvaI	CYCGRG	2 cut(s)	37, 110
AvaII	GGWCC	5 cut(s)	76, 199, 298, 514, 535
BanII	GRGCYC	2 cut(s)	44, 342
BauI	CACGAG	2 cut(s)	215, 423
BbsI	GAAGAC	1 cut(s)	1169
Bbv12I	GWGCWC	3 cut(s)	44, 342, 894
BbvI	GCAGC	1 cut(s)	445
BccI	CCATC	4 cut(s)	69, 185, 275, 422
BceAI	ACGGC	4 cut(s)	9, 292, 298, 1031
BciT130I	CCWGG	2 cut(s)	164, 296
BciVI	GTATCC	1 cut(s)	1005
BcnI	CCSGG	1 cut(s)	335
BcoDI	GTCTC	2 cut(s)	397, 584
BfaI	CTAG	2 cut(s)	576, 846
BfmI	CTRYAG	2 cut(s)	431, 1244
BfuAI	ACCTGC	1 cut(s)	197
BfuI	GTATCC	1 cut(s)	1005
BisI	GCNGC	9 cut(s)	135, 138, 193, 312, 315, 434, 549, 759, 1235
BlsI	GCNGC	9 cut(s)	136, 139, 194, 313, 316, 435, 550, 760, 1236
Bme1390I	CCNGG	3 cut(s)	164, 296, 335
Bme18I	GGWCC	5 cut(s)	76, 199, 298, 514, 535
BmeRI	GACNNNNNGTC	1 cut(s)	217
BmeT110I	CYCGRG	2 cut(s)	37, 110
BmgBI	CACGTC	1 cut(s)	469
BmgT120I	GGNCC	5 cut(s)	76, 199, 298, 514, 535
BmiI	GGNNCC	2 cut(s)	78, 300
BmrFI	CCNGG	3 cut(s)	164, 296, 335
BmsI	GCATC	4 cut(s)	357, 535, 715, 745
BpiI	GAAGAC	1 cut(s)	1169
Bpu10I	CCTNAGC	1 cut(s)	158
BpuEI	CTTGAG	2 cut(s)	236, 440
BpuMI	CCSGG	1 cut(s)	335
BsaWI	WCCGGW	2 cut(s)	886, 991
BsaXI	ACNNNNNCTCC	4 cut(s)	26, 56, 107, 137
Bsc4I	CCNNNNNNNGG	1 cut(s)	163
Bse118I	RCCGGY	1 cut(s)	886
BseBI	CCWGG	2 cut(s)	164, 296
BseGI	GGATG	6 cut(s)	61, 267, 330, 462, 718, 760
BseLI	CCNNNNNNNGG	1 cut(s)	163
BseMII	CTCAG	4 cut(s)	609, 768, 1184, 1235
BseRI	GAGGAG	4 cut(s)	133, 136, 172, 1157
BseX3I	CGGCCG	1 cut(s)	1016
BseXI	GCAGC	1 cut(s)	445
BsgI	GTGCAG	1 cut(s)	737
Bsh1236I	CGCG	4 cut(s)	195, 204, 309, 571
Bsh1285I	CGRYCG	2 cut(s)	346, 1019
BshFI	GGCC	5 cut(s)	167, 410, 551, 921, 1018
BshTI	ACCGGT	1 cut(s)	886
BsiEI	CGRYCG	2 cut(s)	346, 1019
BsiHKAI	GWGCWC	3 cut(s)	44, 342, 894
BsiHKCI	CYCGRG	2 cut(s)	37, 110
BsiSI	CCGG	3 cut(s)	335, 887, 992
BsiWI	CGTACG	1 cut(s)	381
BslFI	GGGAC	2 cut(s)	62, 284
BslI	CCNNNNNNNGG	1 cut(s)	163
BsmAI	GTCTC	2 cut(s)	397, 584
BsmBI	CGTCTC	1 cut(s)	397
BsmFI	GGGAC	2 cut(s)	62, 284
BsnI	GGCC	5 cut(s)	167, 410, 551, 921, 1018
BsoBI	CYCGRG	2 cut(s)	37, 110
Bsp1286I	GDGCHC	3 cut(s)	44, 342, 894
Bsp1407I	TGTACA	2 cut(s)	223, 327
Bsp143I	GATC	4 cut(s)	234, 781, 910, 1072
BspANI	GGCC	5 cut(s)	167, 410, 551, 921, 1018
BspCNI	CTCAG	4 cut(s)	608, 769, 1185, 1234
BspFNI	CGCG	4 cut(s)	195, 204, 309, 571
BspLI	GGNNCC	2 cut(s)	78, 300
BspMAI	CTGCAG	2 cut(s)	435, 1248
BspMI	ACCTGC	1 cut(s)	197
BspPI	GGATC	2 cut(s)	789, 905
BsrBI	CCGCTC	1 cut(s)	123
BsrFI	RCCGGY	1 cut(s)	886
BsrGI	TGTACA	2 cut(s)	223, 327
BssAI	RCCGGY	1 cut(s)	886
BssMI	GATC	4 cut(s)	234, 781, 910, 1072
BssSI	CACGAG	2 cut(s)	215, 423
Bst2BI	CACGAG	2 cut(s)	215, 423
Bst2UI	CCWGG	2 cut(s)	164, 296
Bst4CI	ACNGT	4 cut(s)	228, 400, 908, 974
BstAUI	TGTACA	2 cut(s)	223, 327
BstC8I	GCNNGC	1 cut(s)	894
BstDEI	CTNAG	5 cut(s)	158, 595, 777, 1193, 1221
BstF5I	GGATG	6 cut(s)	61, 267, 330, 462, 718, 760
BstFNI	CGCG	4 cut(s)	195, 204, 309, 571
BstHHI	GCGC	3 cut(s)	311, 573, 1199
BstKTI	GATC	4 cut(s)	237, 784, 913, 1075
BstMAI	GTCTC	2 cut(s)	397, 584
BstMBI	GATC	4 cut(s)	234, 781, 910, 1072
BstMCI	CGRYCG	2 cut(s)	346, 1019
BstMWI	GCNNNNNNNGC	7 cut(s)	201, 570, 639, 889, 1196, 1203, 1243
BstNI	CCWGG	2 cut(s)	164, 296
BstNSI	RCATGY	1 cut(s)	964
BstSCI	CCNGG	3 cut(s)	162, 294, 333
BstSFI	CTRYAG	2 cut(s)	431, 1244
BstUI	CGCG	4 cut(s)	195, 204, 309, 571
BstV1I	GCAGC	1 cut(s)	445
BstV2I	GAAGAC	1 cut(s)	1169
BstZI	CGGCCG	1 cut(s)	1016
BsuI	GTATCC	1 cut(s)	1005
BsuRI	GGCC	5 cut(s)	167, 410, 551, 921, 1018
BtrI	CACGTC	1 cut(s)	469
BtsCI	GGATG	6 cut(s)	61, 267, 330, 462, 718, 760
BtsI	GCAGTG	1 cut(s)	1058
BtsIMutI	CAGTG	3 cut(s)	913, 979, 1058
BveI	ACCTGC	1 cut(s)	197
Cac8I	GCNNGC	1 cut(s)	894
CaiI	CAGNNNCTG	1 cut(s)	1192
CfoI	GCGC	3 cut(s)	311, 573, 1199
Cfr10I	RCCGGY	1 cut(s)	886
Cfr13I	GGNCC	5 cut(s)	76, 199, 298, 514, 535
Csp6I	GTAC	6 cut(s)	224, 229, 328, 382, 567, 1036
CspAI	ACCGGT	1 cut(s)	886
CviAII	CATG	1 cut(s)	961
CviQI	GTAC	6 cut(s)	224, 229, 328, 382, 567, 1036
DdeI	CTNAG	5 cut(s)	158, 595, 777, 1193, 1221
DpnI	GATC	4 cut(s)	236, 783, 912, 1074
DpnII	GATC	4 cut(s)	234, 781, 910, 1072
DrdI	GACNNNNNNGTC	1 cut(s)	467
DriI	GACNNNNNGTC	1 cut(s)	217
DseDI	GACNNNNNNGTC	1 cut(s)	467
EaeI	YGGCCR	2 cut(s)	165, 1016
EagI	CGGCCG	1 cut(s)	1016
Eam1105I	GACNNNNNGTC	1 cut(s)	217
EciI	GGCGGA	3 cut(s)	20, 678, 690
Ecl136II	GAGCTC	2 cut(s)	42, 340
EclXI	CGGCCG	1 cut(s)	1016
Eco24I	GRGCYC	2 cut(s)	44, 342
Eco32I	GATATC	2 cut(s)	997, 1081
Eco47I	GGWCC	5 cut(s)	76, 199, 298, 514, 535
Eco52I	CGGCCG	1 cut(s)	1016
Eco53kI	GAGCTC	2 cut(s)	42, 340
Eco57I	CTGAAG	1 cut(s)	944
Eco88I	CYCGRG	2 cut(s)	37, 110
EcoICRI	GAGCTC	2 cut(s)	42, 340
EcoO109I	RGGNCCY	2 cut(s)	76, 298
EcoRII	CCWGG	2 cut(s)	162, 294
EcoRV	GATATC	2 cut(s)	997, 1081
EcoT22I	ATGCAT	1 cut(s)	730
EcoT38I	GRGCYC	2 cut(s)	44, 342
Esp3I	CGTCTC	1 cut(s)	397
FaeI	CATG	1 cut(s)	964
FaqI	GGGAC	2 cut(s)	62, 284
FatI	CATG	1 cut(s)	960
FauNDI	CATATG	1 cut(s)	916
Fnu4HI	GCNGC	9 cut(s)	135, 138, 193, 312, 315, 434, 549, 759, 1235
FokI	GGATG	6 cut(s)	48, 254, 317, 449, 725, 767
FriOI	GRGCYC	2 cut(s)	44, 342
Fsp4HI	GCNGC	9 cut(s)	135, 138, 193, 312, 315, 434, 549, 759, 1235
FspBI	CTAG	2 cut(s)	576, 846
GlaI	GCGC	3 cut(s)	310, 572, 1198
GluI	GCNGC	9 cut(s)	135, 138, 193, 312, 315, 434, 549, 759, 1235
HaeIII	GGCC	5 cut(s)	167, 410, 551, 921, 1018
HapII	CCGG	3 cut(s)	335, 887, 992
HhaI	GCGC	3 cut(s)	311, 573, 1199
Hin1II	CATG	1 cut(s)	964
Hin6I	GCGC	3 cut(s)	309, 571, 1197
HinP1I	GCGC	3 cut(s)	309, 571, 1197
HincII	GTYRAC	1 cut(s)	1062
HindII	GTYRAC	1 cut(s)	1062
HindIII	AAGCTT	1 cut(s)	869
HinfI	GANTC	9 cut(s)	218, 439, 520, 530, 849, 1126, 1150, 1183, 1219
HpaII	CCGG	3 cut(s)	335, 887, 992
HphI	GGTGA	3 cut(s)	434, 463, 1171
Hpy166II	GTNNAC	3 cut(s)	904, 1062, 1228
Hpy188I	TCNGA	6 cut(s)	46, 529, 598, 778, 1194, 1218
Hpy188III	TCNNGA	5 cut(s)	112, 512, 814, 1046, 1076
Hpy8I	GTNNAC	3 cut(s)	904, 1062, 1228
Hpy99I	CGWCG	3 cut(s)	30, 50, 278
HpyAV	CCTTC	5 cut(s)	67, 352, 383, 745, 817
HpyCH4III	ACNGT	4 cut(s)	228, 400, 908, 974
HpyCH4IV	ACGT	2 cut(s)	390, 468
HpyCH4V	TGCA	5 cut(s)	433, 657, 718, 728, 1246
HpyF10VI	GCNNNNNNNGC	7 cut(s)	201, 570, 639, 889, 1196, 1203, 1243
HpyF3I	CTNAG	5 cut(s)	158, 595, 777, 1193, 1221
HpySE526I	ACGT	2 cut(s)	390, 468
Hsp92II	CATG	1 cut(s)	964
HspAI	GCGC	3 cut(s)	309, 571, 1197
Kzo9I	GATC	4 cut(s)	234, 781, 910, 1072
LmnI	GCTCC	5 cut(s)	47, 128, 337, 1144, 1249
Lsp1109I	GCAGC	1 cut(s)	445
LweI	GCATC	4 cut(s)	357, 535, 715, 745
MaeI	CTAG	2 cut(s)	576, 846
MaeII	ACGT	2 cut(s)	390, 468
MaeIII	GTNAC	2 cut(s)	469, 479
MalI	GATC	4 cut(s)	236, 783, 912, 1074
MbiI	CCGCTC	1 cut(s)	123
MboI	GATC	4 cut(s)	234, 781, 910, 1072
MboII	GAAGA	6 cut(s)	937, 967, 1121, 1132, 1135, 1174
MhlI	GDGCHC	3 cut(s)	44, 342, 894
MluCI	AATT	4 cut(s)	863, 875, 979, 1041
MlyI	GAGTC	4 cut(s)	227, 843, 1144, 1213
MmeI	TCCRAC	2 cut(s)	69, 1083
Mph1103I	ATGCAT	1 cut(s)	730
MslI	CAYNNNNRTG	1 cut(s)	662
MspA1I	CMGCKG	2 cut(s)	325, 436
MspI	CCGG	3 cut(s)	335, 887, 992
MspR9I	CCNGG	3 cut(s)	164, 296, 335
MvaI	CCWGG	2 cut(s)	164, 296
MvnI	CGCG	4 cut(s)	195, 204, 309, 571
MwoI	GCNNNNNNNGC	7 cut(s)	201, 570, 639, 889, 1196, 1203, 1243
NciI	CCSGG	1 cut(s)	335
NdeI	CATATG	1 cut(s)	916
NdeII	GATC	4 cut(s)	234, 781, 910, 1072
NlaIII	CATG	1 cut(s)	964
NlaIV	GGNNCC	2 cut(s)	78, 300
NmeAIII	GCCGAG	1 cut(s)	1044
NmuCI	GTSAC	2 cut(s)	469, 479
NsiI	ATGCAT	1 cut(s)	730
NspI	RCATGY	1 cut(s)	964
PaeR7I	CTCGAG	1 cut(s)	110
PaqCI	CACCTGC	1 cut(s)	197
PciI	ACATGT	1 cut(s)	960
PcsI	WCGNNNNNNNCGW	2 cut(s)	348, 396
PfeI	GAWTC	5 cut(s)	439, 520, 530, 1126, 1183
Pfl23II	CGTACG	1 cut(s)	381
PfoI	TCCNGGA	1 cut(s)	333
PinAI	ACCGGT	1 cut(s)	886
PkrI	GCNGC	9 cut(s)	136, 139, 194, 313, 316, 435, 550, 760, 1236
PleI	GAGTC	4 cut(s)	226, 843, 1144, 1213
PpsI	GAGTC	4 cut(s)	226, 843, 1144, 1213
PpuMI	RGGWCCY	2 cut(s)	76, 298
PscI	ACATGT	1 cut(s)	960
Psp124BI	GAGCTC	2 cut(s)	44, 342
Psp5II	RGGWCCY	2 cut(s)	76, 298
Psp6I	CCWGG	2 cut(s)	162, 294
PspGI	CCWGG	2 cut(s)	162, 294
PspLI	CGTACG	1 cut(s)	381
PspN4I	GGNNCC	2 cut(s)	78, 300
PspPI	GGNCC	5 cut(s)	76, 199, 298, 514, 535
PspPPI	RGGWCCY	2 cut(s)	76, 298
PsrI	GAACNNNNNNTAC	2 cut(s)	950, 982
PstI	CTGCAG	2 cut(s)	435, 1248
PstNI	CAGNNNCTG	1 cut(s)	1192
PvuII	CAGCTG	2 cut(s)	325, 436
RsaI	GTAC	6 cut(s)	225, 230, 329, 383, 568, 1037
RsaNI	GTAC	6 cut(s)	224, 229, 328, 382, 567, 1036
RseI	CAYNNNNRTG	1 cut(s)	662
SacI	GAGCTC	2 cut(s)	44, 342
SatI	GCNGC	9 cut(s)	135, 138, 193, 312, 315, 434, 549, 759, 1235
Sau3AI	GATC	4 cut(s)	234, 781, 910, 1072
Sau96I	GGNCC	5 cut(s)	76, 199, 298, 514, 535
SchI	GAGTC	4 cut(s)	227, 843, 1144, 1213
ScrFI	CCNGG	3 cut(s)	164, 296, 335
SduI	GDGCHC	3 cut(s)	44, 342, 894
SfaNI	GCATC	4 cut(s)	357, 535, 715, 745
SfcI	CTRYAG	2 cut(s)	431, 1244
Sfr274I	CTCGAG	1 cut(s)	110
SinI	GGWCC	5 cut(s)	76, 199, 298, 514, 535
SlaI	CTCGAG	1 cut(s)	110
SmiMI	CAYNNNNRTG	1 cut(s)	662
SmlI	CTYRAG	3 cut(s)	110, 251, 455
SmoI	CTYRAG	3 cut(s)	110, 251, 455
Sse9I	AATT	4 cut(s)	863, 875, 979, 1041
SspMI	CTAG	2 cut(s)	576, 846
SstI	GAGCTC	2 cut(s)	44, 342
StyD4I	CCNGG	3 cut(s)	162, 294, 333
TaaI	ACNGT	4 cut(s)	228, 400, 908, 974
TaiI	ACGT	2 cut(s)	393, 471
TaqI	TCGA	9 cut(s)	28, 111, 210, 237, 273, 342, 540, 769, 953
TaqII	GACCGA	1 cut(s)	523
TasI	AATT	4 cut(s)	863, 875, 979, 1041
TatI	WGTACW	3 cut(s)	223, 327, 1035
TauI	GCSGC	8 cut(s)	137, 140, 195, 314, 317, 551, 761, 1237
TfiI	GAWTC	5 cut(s)	439, 520, 530, 1126, 1183
TscAI	CASTG	3 cut(s)	913, 979, 1058
TseFI	GTSAC	2 cut(s)	469, 479
TseI	GCWGC	1 cut(s)	433
Tsp45I	GTSAC	2 cut(s)	469, 479
TspDTI	ATGAA	2 cut(s)	66, 724
TspGWI	ACGGA	1 cut(s)	792
TspRI	CASTG	3 cut(s)	913, 979, 1058
VpaK11BI	GGWCC	5 cut(s)	76, 199, 298, 514, 535
XapI	RAATTY	2 cut(s)	979, 1041
XceI	RCATGY	1 cut(s)	964
XhoI	CTCGAG	1 cut(s)	110
XspI	CTAG	2 cut(s)	576, 846
Zsp2I	ATGCAT	1 cut(s)	730

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.