Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0011969.1

Orthogroup ID

OG0006264

Physical Location & Seq

Genomic Coordinates Forward (+)

69051 .. 70034

Gene Structure 984 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0011969.1_g000014.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 984 bp

atggccgacaagaagaagaaacgccgccgtaccgacccaacctccgacgacgacgactccctcccattcaagaacattctcaaacccgactcctccatcctccgctccatccacaaactcaccgcctccctccgctcctcctccgcctcctcctcgtcctcctcctccaaagccctaaccctagccgacctctccatctcctcctgccgcgaggtccgcgaactccccatctcctccgtccagtccgagatcgaatccctcatgctcaaagtcctccactccatcctcgacggcaagggcttcgccttcgacgtcccctcacgcgccgccgccaaccagctctacgtccccgaactcgaccgcatcgtcctcaaagacaaatcctccctccgcccctacgccaacgtctccaccgtccgcaaggccaccgtcaccgcccggatcctccagctcatccacgagctcaccatcaaggacatccacgtcaccaagcgtgacctcttctacaccgacgtcaagctcttccaggaccagtcccagtccgataccatcctcgacgacgtgtcgtgtatgatcggctgcactaggtccagcttgaacgtcgtcgcggcggagaaaggggtggttgtcggccgtctgatcttcagtgacgacggcgatgtgatcgattgtactaagatggggatgggcgggaaagctatcccgccgaatataaacagagttggtgatatgcagagtgatgcattgttcatcttgcttgttgagaaagatgctgcttatatgagattggccgaggatcggttctataatcggtttccttgcatcattgtgactgcgaaaggccagccggatgtcgcaaccaggctgttcttgaggaagatgaagatggaattgaagcttcctgtgttggcattggtggatagtgatccttacgggctgaagattttgtctgtgtatggctgtggttcggttgcctatgactga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000228 GO:0000280 GO:0000706 GO:0000729 GO:0001708 GO:0003674 GO:0003676 GO:0003677 GO:0003824 GO:0003916 GO:0003918 GO:0004518 GO:0004519 GO:0004520 GO:0004536 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005694 GO:0006139 GO:0006259 GO:0006281 GO:0006302 GO:0006310 GO:0006725 GO:0006807 GO:0006950 GO:0006974 GO:0006996 GO:0007049 GO:0007127 GO:0007131 GO:0008094 GO:0008150 GO:0008152 GO:0008544 GO:0009888 GO:0009913 GO:0009957 GO:0009987 GO:0016043 GO:0016462 GO:0016787 GO:0016788 GO:0016817 GO:0016818 GO:0016853 GO:0016887 GO:0016889 GO:0016894 GO:0017111 GO:0022402 GO:0022414 GO:0030154 GO:0030855 GO:0031974 GO:0031981 GO:0032502 GO:0033554 GO:0034641 GO:0035825 GO:0042138 GO:0042623 GO:0042802 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044237 GO:0044238 GO:0044260 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0045165 GO:0046483 GO:0048285 GO:0048856 GO:0048869 GO:0050896 GO:0051321 GO:0051716 GO:0060429 GO:0061505 GO:0061982 GO:0070013 GO:0071704 GO:0071840 GO:0090304 GO:0090305 GO:0097159 GO:0140013 GO:0140097 GO:1901360 GO:1901363 GO:1903046

KEGG Pathways

Metabolic & Signaling

ko04113 map04113

Pfam Domains

Protein Families

TP6A_N

Protein Analysis

327

Amino Acids

36.09

Weight (kDa)

8.76

Isoelectric Point (pI)

61.63

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006264)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G02820
fragaria_vesca	FvH4_1g22710 FvH4_1g22710 FvH4_1g22710 FvH4_1g22710 FvH4_2g03881 FvH4_6g05151
malus_domestica	MD04G1113900.v1.1
prunus_persica	Prupe.6G243200_v2.0.a1
pyrus_communis	pycom04g10130
rosa_chinensis	RchiOBHm_Chr2g0103111 RchiOBHm_Chr2g0116961 RchiOBHm_Chr3g0453711
rosa_laevigata	RLG00000018316
rosa_multiflora	Rmu_sc0003556.1_g000009 Rmu_sc0011969.1_g000014 Rmu_ssc0000238.1_g000021 Rmu_ssc0000238.1_g000022
rosa_roxburghii	Rroxscaffold_2G00126860 Rroxscaffold_6G00430630
rosa_rugosa	Rorug02G0209000.1
rosa_samantha	Rh2AG265100 Rh2BG276800 Rh2DG272500 Rh2DG291500
rosa_wichuraiana	Rw2G020900 Rw3G004140

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	2 cut(s)	365, 482
AatII	GACGTC	2 cut(s)	315, 516
AccBSI	CCGCTC	2 cut(s)	105, 135
AccII	CGCG	4 cut(s)	210, 219, 324, 608
AclWI	GGATC	4 cut(s)	436, 449, 804, 920
AcoI	YGGCCR	3 cut(s)	3, 631, 789
AcuI	CTGAAG	2 cut(s)	628, 959
AcyI	GRCGYC	2 cut(s)	312, 513
AfaI	GTAC	2 cut(s)	31, 673
AfiI	CCNNNNNNNGG	1 cut(s)	798
AflIII	ACRYGT	1 cut(s)	561
AgsI	TTSAA	3 cut(s)	70, 598, 895
AhdI	GACNNNNNGTC	1 cut(s)	562
AjiI	CACGTC	2 cut(s)	484, 562
AjnI	CCWGG	2 cut(s)	525, 860
AluBI	AGCT	7 cut(s)	340, 451, 463, 520, 594, 698, 898
AluI	AGCT	7 cut(s)	340, 451, 463, 520, 594, 698, 898
Alw21I	GWGCWC	1 cut(s)	465
Alw26I	GTCTC	1 cut(s)	412
AlwI	GGATC	4 cut(s)	436, 449, 804, 920
AoxI	GGCC	5 cut(s)	3, 423, 631, 789, 841
ApeKI	GCWGC	2 cut(s)	579, 773
AspLEI	GCGC	1 cut(s)	326
AspS9I	GGNCC	3 cut(s)	214, 529, 588
AsuC2I	CCSGG	1 cut(s)	439
AsuHPI	GGTGA	5 cut(s)	112, 424, 457, 478, 737
AvaII	GGWCC	3 cut(s)	214, 529, 588
BamHI	GGATCC	1 cut(s)	441
BanII	GRGCYC	1 cut(s)	465
BauI	CACGAG	1 cut(s)	458
Bbv12I	GWGCWC	1 cut(s)	465
BbvI	GCAGC	2 cut(s)	566, 760
BceAI	ACGGC	4 cut(s)	12, 307, 618, 670
BcgI	CGANNNNNNTGC	2 cut(s)	283, 317
BciT130I	CCWGG	2 cut(s)	527, 862
BcnI	CCSGG	1 cut(s)	439
BcoDI	GTCTC	1 cut(s)	412
BfaI	CTAG	2 cut(s)	182, 585
BisI	GCNGC	7 cut(s)	25, 208, 327, 330, 580, 609, 774
BlsI	GCNGC	7 cut(s)	26, 209, 328, 331, 581, 610, 775
Bme1390I	CCNGG	3 cut(s)	439, 527, 862
Bme18I	GGWCC	3 cut(s)	214, 529, 588
BmeRI	GACNNNNNGTC	1 cut(s)	562
BmgBI	CACGTC	2 cut(s)	484, 562
BmgT120I	GGNCC	3 cut(s)	214, 529, 588
BmiI	GGNNCC	1 cut(s)	443
BmrFI	CCNGG	3 cut(s)	439, 527, 862
BmrI	ACTGGG	1 cut(s)	532
BmsI	GCATC	4 cut(s)	372, 730, 760, 831
BmuI	ACTGGG	1 cut(s)	532
BpmI	CTGGAG	1 cut(s)	431
BpuEI	CTTGAG	1 cut(s)	892
BpuMI	CCSGG	1 cut(s)	439
Bsa29I	ATCGAT	1 cut(s)	666
BsaBI	GATNNNNATC	1 cut(s)	924
BsaHI	GRCGYC	2 cut(s)	312, 513
BsaJI	CCNNGG	1 cut(s)	792
BsaXI	ACNNNNNCTCC	6 cut(s)	26, 41, 56, 71, 368, 398
Bsc4I	CCNNNNNNNGG	1 cut(s)	798
Bse1I	ACTGG	3 cut(s)	241, 532, 538
Bse8I	GATNNNNATC	1 cut(s)	924
BseBI	CCWGG	2 cut(s)	527, 862
BseCI	ATCGAT	1 cut(s)	666
BseDI	CCNNGG	1 cut(s)	792
BseGI	GGATG	8 cut(s)	96, 108, 282, 453, 477, 549, 690, 856
BseJI	GATNNNNATC	1 cut(s)	924
BseLI	CCNNNNNNNGG	1 cut(s)	798
BseNI	ACTGG	3 cut(s)	241, 532, 538
BseRI	GAGGAG	9 cut(s)	82, 127, 130, 139, 142, 151, 154, 190, 223
BseX3I	CGGCCG	1 cut(s)	631
BseXI	GCAGC	2 cut(s)	566, 760
BsgI	GTGCAG	1 cut(s)	565
Bsh1236I	CGCG	4 cut(s)	210, 219, 324, 608
Bsh1285I	CGRYCG	2 cut(s)	361, 634
BshFI	GGCC	5 cut(s)	5, 425, 633, 791, 843
BshVI	ATCGAT	1 cut(s)	666
BsiEI	CGRYCG	2 cut(s)	361, 634
BsiHKAI	GWGCWC	1 cut(s)	465
BsiSI	CCGG	2 cut(s)	439, 848
BslFI	GGGAC	3 cut(s)	299, 332, 520
BslI	CCNNNNNNNGG	1 cut(s)	798
BsmAI	GTCTC	1 cut(s)	412
BsmBI	CGTCTC	1 cut(s)	412
BsmFI	GGGAC	3 cut(s)	299, 332, 520
BsnI	GGCC	5 cut(s)	5, 425, 633, 791, 843
Bsp1286I	GDGCHC	1 cut(s)	465
Bsp143I	GATC	7 cut(s)	249, 441, 573, 639, 663, 796, 925
BspANI	GGCC	5 cut(s)	5, 425, 633, 791, 843
BspDI	ATCGAT	1 cut(s)	666
BspFNI	CGCG	4 cut(s)	210, 219, 324, 608
BspLI	GGNNCC	1 cut(s)	443
BspPI	GGATC	4 cut(s)	436, 449, 804, 920
BspQI	GCTCTTC	1 cut(s)	527
BsrBI	CCGCTC	2 cut(s)	105, 135
BsrI	ACTGG	3 cut(s)	241, 532, 538
BssECI	CCNNGG	1 cut(s)	792
BssMI	GATC	7 cut(s)	249, 441, 573, 639, 663, 796, 925
BssNI	GRCGYC	2 cut(s)	312, 513
BssSI	CACGAG	1 cut(s)	458
Bst2BI	CACGAG	1 cut(s)	458
Bst2UI	CCWGG	2 cut(s)	527, 862
Bst4CI	ACNGT	2 cut(s)	415, 430
Bst6I	CTCTTC	2 cut(s)	506, 527
BstACI	GRCGYC	2 cut(s)	312, 513
BstC8I	GCNNGC	1 cut(s)	845
BstDEI	CTNAG	1 cut(s)	675
BstF5I	GGATG	8 cut(s)	96, 108, 282, 453, 477, 549, 690, 856
BstFNI	CGCG	4 cut(s)	210, 219, 324, 608
BstHHI	GCGC	1 cut(s)	326
BstKTI	GATC	7 cut(s)	252, 444, 576, 642, 666, 799, 928
BstMAI	GTCTC	1 cut(s)	412
BstMBI	GATC	7 cut(s)	249, 441, 573, 639, 663, 796, 925
BstMCI	CGRYCG	2 cut(s)	361, 634
BstMWI	GCNNNNNNNGC	1 cut(s)	216
BstNI	CCWGG	2 cut(s)	527, 862
BstSCI	CCNGG	3 cut(s)	437, 525, 860
BstUI	CGCG	4 cut(s)	210, 219, 324, 608
BstV1I	GCAGC	2 cut(s)	566, 760
BstX2I	RGATCY	1 cut(s)	441
BstYI	RGATCY	1 cut(s)	441
BstZI	CGGCCG	1 cut(s)	631
Bsu15I	ATCGAT	1 cut(s)	666
BsuRI	GGCC	5 cut(s)	5, 425, 633, 791, 843
BsuTUI	ATCGAT	1 cut(s)	666
BtgZI	GCGATG	1 cut(s)	672
BtrI	CACGTC	2 cut(s)	484, 562
BtsCI	GGATG	8 cut(s)	96, 108, 282, 453, 477, 549, 690, 856
BtsIMutI	CAGTG	1 cut(s)	652
Cac8I	GCNNGC	1 cut(s)	845
CfoI	GCGC	1 cut(s)	326
Cfr13I	GGNCC	3 cut(s)	214, 529, 588
ClaI	ATCGAT	1 cut(s)	666
Csp6I	GTAC	2 cut(s)	30, 672
CviAII	CATG	1 cut(s)	262
CviQI	GTAC	2 cut(s)	30, 672
DdeI	CTNAG	1 cut(s)	675
DpnI	GATC	7 cut(s)	251, 443, 575, 641, 665, 798, 927
DpnII	GATC	7 cut(s)	249, 441, 573, 639, 663, 796, 925
DrdI	GACNNNNNNGTC	2 cut(s)	365, 482
DriI	GACNNNNNGTC	1 cut(s)	562
DseDI	GACNNNNNNGTC	2 cut(s)	365, 482
EaeI	YGGCCR	3 cut(s)	3, 631, 789
EagI	CGGCCG	1 cut(s)	631
Eam1104I	CTCTTC	2 cut(s)	506, 527
Eam1105I	GACNNNNNGTC	1 cut(s)	562
EarI	CTCTTC	2 cut(s)	506, 527
EciI	GGCGGA	3 cut(s)	133, 380, 626
Ecl136II	GAGCTC	1 cut(s)	463
EclXI	CGGCCG	1 cut(s)	631
Eco24I	GRGCYC	1 cut(s)	465
Eco47I	GGWCC	3 cut(s)	214, 529, 588
Eco52I	CGGCCG	1 cut(s)	631
Eco53kI	GAGCTC	1 cut(s)	463
Eco57I	CTGAAG	2 cut(s)	628, 959
EcoICRI	GAGCTC	1 cut(s)	463
EcoRII	CCWGG	2 cut(s)	525, 860
EcoT22I	ATGCAT	1 cut(s)	745
EcoT38I	GRGCYC	1 cut(s)	465
Esp3I	CGTCTC	1 cut(s)	412
FaeI	CATG	1 cut(s)	265
FaiI	YATR	9 cut(s)	263, 572, 713, 731, 780, 782, 807, 957, 978
FaqI	GGGAC	3 cut(s)	299, 332, 520
FatI	CATG	1 cut(s)	261
FauI	CCCGC	2 cut(s)	683, 711
Fnu4HI	GCNGC	7 cut(s)	25, 208, 327, 330, 580, 609, 774
FokI	GGATG	8 cut(s)	83, 95, 269, 440, 464, 536, 697, 863
FriOI	GRGCYC	1 cut(s)	465
Fsp4HI	GCNGC	7 cut(s)	25, 208, 327, 330, 580, 609, 774
FspBI	CTAG	2 cut(s)	182, 585
GlaI	GCGC	1 cut(s)	325
GluI	GCNGC	7 cut(s)	25, 208, 327, 330, 580, 609, 774
GsuI	CTGGAG	1 cut(s)	431
HaeIII	GGCC	5 cut(s)	5, 425, 633, 791, 843
HapII	CCGG	2 cut(s)	439, 848
HhaI	GCGC	1 cut(s)	326
Hin1I	GRCGYC	2 cut(s)	312, 513
Hin1II	CATG	1 cut(s)	265
Hin6I	GCGC	1 cut(s)	324
HinP1I	GCGC	1 cut(s)	324
HindIII	AAGCTT	1 cut(s)	896
HinfI	GANTC	3 cut(s)	56, 89, 254
HpaII	CCGG	2 cut(s)	439, 848
HphI	GGTGA	5 cut(s)	112, 424, 457, 478, 737
Hpy188I	TCNGA	4 cut(s)	46, 247, 544, 639
Hpy188III	TCNNGA	2 cut(s)	70, 871
HpyAV	CCTTC	1 cut(s)	316
HpyCH4III	ACNGT	2 cut(s)	415, 430
HpyCH4IV	ACGT	7 cut(s)	312, 345, 405, 483, 513, 561, 600
HpyCH4V	TGCA	4 cut(s)	582, 733, 743, 822
HpyF10VI	GCNNNNNNNGC	1 cut(s)	216
HpyF3I	CTNAG	1 cut(s)	675
HpySE526I	ACGT	7 cut(s)	312, 345, 405, 483, 513, 561, 600
Hsp92I	GRCGYC	2 cut(s)	312, 513
Hsp92II	CATG	1 cut(s)	265
HspAI	GCGC	1 cut(s)	324
Kzo9I	GATC	7 cut(s)	249, 441, 573, 639, 663, 796, 925
LguI	GCTCTTC	1 cut(s)	527
LmnI	GCTCC	2 cut(s)	110, 140
Lsp1109I	GCAGC	2 cut(s)	566, 760
LweI	GCATC	4 cut(s)	372, 730, 760, 831
MaeI	CTAG	2 cut(s)	182, 585
MaeII	ACGT	7 cut(s)	312, 345, 405, 483, 513, 561, 600
MaeIII	GTNAC	5 cut(s)	430, 484, 494, 647, 829
MalI	GATC	7 cut(s)	251, 443, 575, 641, 665, 798, 927
MbiI	CCGCTC	2 cut(s)	105, 135
MboI	GATC	7 cut(s)	249, 441, 573, 639, 663, 796, 925
MboII	GAAGA	8 cut(s)	25, 28, 493, 514, 634, 889, 895, 952
MflI	RGATCY	1 cut(s)	441
MhlI	GDGCHC	1 cut(s)	465
MluCI	AATT	1 cut(s)	890
MlyI	GAGTC	2 cut(s)	50, 83
MmeI	TCCRAC	1 cut(s)	69
Mph1103I	ATGCAT	1 cut(s)	745
MslI	CAYNNNNRTG	1 cut(s)	827
MspI	CCGG	2 cut(s)	439, 848
MspR9I	CCNGG	3 cut(s)	439, 527, 862
MvaI	CCWGG	2 cut(s)	527, 862
MvnI	CGCG	4 cut(s)	210, 219, 324, 608
MwoI	GCNNNNNNNGC	1 cut(s)	216
NciI	CCSGG	1 cut(s)	439
NdeII	GATC	7 cut(s)	249, 441, 573, 639, 663, 796, 925
NlaIII	CATG	1 cut(s)	265
NlaIV	GGNNCC	1 cut(s)	443
NmeAIII	GCCGAG	1 cut(s)	817
NmuCI	GTSAC	5 cut(s)	430, 484, 494, 647, 829
NsiI	ATGCAT	1 cut(s)	745
PciSI	GCTCTTC	1 cut(s)	527
PcsI	WCGNNNNNNNCGW	3 cut(s)	309, 363, 411
PfeI	GAWTC	1 cut(s)	254
PfoI	TCCNGGA	1 cut(s)	525
PkrI	GCNGC	7 cut(s)	26, 209, 328, 331, 581, 610, 775
PleI	GAGTC	2 cut(s)	50, 83
PpsI	GAGTC	2 cut(s)	50, 83
Psp124BI	GAGCTC	1 cut(s)	465
Psp6I	CCWGG	2 cut(s)	525, 860
PspGI	CCWGG	2 cut(s)	525, 860
PspN4I	GGNNCC	1 cut(s)	443
PspPI	GGNCC	3 cut(s)	214, 529, 588
PsuI	RGATCY	1 cut(s)	441
RsaI	GTAC	2 cut(s)	31, 673
RsaNI	GTAC	2 cut(s)	30, 672
RseI	CAYNNNNRTG	1 cut(s)	827
SacI	GAGCTC	1 cut(s)	465
SapI	GCTCTTC	1 cut(s)	527
SatI	GCNGC	7 cut(s)	25, 208, 327, 330, 580, 609, 774
Sau3AI	GATC	7 cut(s)	249, 441, 573, 639, 663, 796, 925
Sau96I	GGNCC	3 cut(s)	214, 529, 588
SchI	GAGTC	2 cut(s)	50, 83
ScrFI	CCNGG	3 cut(s)	439, 527, 862
SduI	GDGCHC	1 cut(s)	465
SfaNI	GCATC	4 cut(s)	372, 730, 760, 831
SinI	GGWCC	3 cut(s)	214, 529, 588
SmiMI	CAYNNNNRTG	1 cut(s)	827
SmlI	CTYRAG	1 cut(s)	871
SmoI	CTYRAG	1 cut(s)	871
Sse9I	AATT	1 cut(s)	890
SspMI	CTAG	2 cut(s)	182, 585
SstI	GAGCTC	1 cut(s)	465
StyD4I	CCNGG	3 cut(s)	437, 525, 860
TaaI	ACNGT	2 cut(s)	415, 430
TaiI	ACGT	7 cut(s)	315, 348, 408, 486, 516, 564, 603
TaqI	TCGA	6 cut(s)	252, 288, 309, 357, 555, 666
TasI	AATT	1 cut(s)	890
TatI	WGTACW	1 cut(s)	671
TauI	GCSGC	5 cut(s)	27, 210, 329, 332, 611
TfiI	GAWTC	1 cut(s)	254
TscAI	CASTG	1 cut(s)	652
TseFI	GTSAC	5 cut(s)	430, 484, 494, 647, 829
TseI	GCWGC	2 cut(s)	579, 773
Tsp45I	GTSAC	5 cut(s)	430, 484, 494, 647, 829
TspDTI	ATGAA	2 cut(s)	739, 896
TspGWI	ACGGA	1 cut(s)	226
TspRI	CASTG	1 cut(s)	652
VpaK11BI	GGWCC	3 cut(s)	214, 529, 588
XspI	CTAG	2 cut(s)	182, 585
ZraI	GACGTC	2 cut(s)	313, 514
Zsp2I	ATGCAT	1 cut(s)	745

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.