Prupe.6G243200_v2.0.a1

Component of the DNA topoisomerase VI involved in chromatin organization and progression of endoreduplication cycles. Relaxes both positive and negative superturns and exhibits a strong decatenase activity

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp06
Physical Location & Seq
Reverse (-)
24125872 .. 24127203
1332 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.6G243200.1

Sequence Viewer

Length: 1302 bp
ATGGCGGACAAGAAAAAACGCCAAACGCCGACAACGGTTGCGGACAAGAAGAAACGCCGTCGACCCGACCCGAGCTCTGACGACGACACCCATCACCCCTTCAAGAGCCTCCTCAAACCCGACCCGCTCATCCTCCAAACCCTCGACGACCTACGCTCCGCCACCGCCTCCTCATCCTCTTCTTCCAAATCCATAACCCTCGCCGACCTCGCCGTCGGCTCCACTTGCCGCGAGGTCAGCGACCTCGACCTGCCGTCCGTCCAGTCGGAGATCGAGCTCCAGATGCTCAAGGTCATCAAATCCATCCTCGACGGCAACGGTTTCGCGTTCGAGGTCCCCTCACGCGCCGCCGCTAACCAGCTCTATGTTCCGGAGCTCGACCGCATTGTGCTAAAAGACAAAACTTCCCTCCGCCCCTACGCCAACGTCTCCACCGTCCGCAAGGCCACCATCACAGCTCGTCTTCTCCAGCTGATCCACCAGCTCTGCCTCAAGAACATCCACGTCACCAAGCGTGACCTGTTCTACACCGACGTCAAGCTCTTCCAGGACCAGACGCAGTCCGATTCGGTCCTCGATGACGTGTCGTGTATGCTTGGCTGCACGCGCTCGAGCCTCAATGTCATCGCCTCTGAGAAGGGTGTGGTTGTGGGTCGCCTGATTTTCAGCGACAATGGAGATATGATTGACTGCACGAAAATGGGAATGGGCGGAAAAGCCATCCCGCCCAATATTGACAGGGTTGGTGATATGCAGAGTGATGCTCTGTTTATATTGCTGGTTGAGAAGGATGCTGCTTATATTAGACTGGCTGAGGATCGGTTTTACAATCGATTTCCGTGCATTATCGTCACCGCCAAGGGACAGCCGGATGTTGCAACCAGGCTGTTTTTGAGGAAGATGAAGCTGGAATTGAAACTGCCGGTGTTGGCCCTTGTGGACAGTGATCCATACGGGCTGAAAATTTTATCTGTTTATGGTTGTGGGTCGAAGAACATGTCGTATGACAGTGCCAATTTGACGACGCCGGATATAAAATGGTTGGGGATACGGCCCAGTGATTTGGACAAGTACAAGATACCGGAGCAGTGTAGGTTGACAATGACTGATCAGGATATTAAGACAGGGAAAGAAATGTTGGAGGAAGATTTTGTGAAGAAAAACCCGAAATGGGTTGAGGAGCTGACTCTTATGGTGAAAACCAAGCAAAAGGCAGAAATTCAAGCTTTGAGCACATTCGGCTTTCAATATCTCTCAGAGACTTATTTGCCGCTAAAACTGCAGGAGCAGGATTGGATATGA

Protein Analysis

434

Amino Acids

48.61

Weight (kDa)

8.25

Isoelectric Point (pI)

47.66

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 212
AatII GACGTC 1 cut(s) 537
Acc36I ACCTGC 1 cut(s) 258
AccBSI CCGCTC 1 cut(s) 127
AccI GTMKAC 1 cut(s) 61
AccII CGCG 4 cut(s) 231, 326, 345, 607
AccIII TCCGGA 1 cut(s) 370
AclWI GGATC 3 cut(s) 469, 825, 941
AcsI RAATTY 2 cut(s) 963, 1218
AcyI GRCGYC 2 cut(s) 534, 1025
AfaI GTAC 1 cut(s) 1073
AfiI CCNNNNNNNGG 1 cut(s) 1171
AflIII ACRYGT 2 cut(s) 582, 996
AgsI TTSAA 4 cut(s) 103, 916, 1223, 1247
AhdI GACNNNNNGTC 1 cut(s) 253
AjiI CACGTC 2 cut(s) 505, 583
AjnI CCWGG 2 cut(s) 546, 881
AjuI GAANNNNNNNTTGG 2 cut(s) 1121, 1153
Alw21I GWGCWC 4 cut(s) 77, 279, 378, 1235
Alw26I GTCTC 2 cut(s) 433, 1253
AlwI GGATC 3 cut(s) 469, 825, 941
Ama87I CYCGRG 2 cut(s) 70, 610
Aor13HI TCCGGA 1 cut(s) 370
AoxI GGCC 3 cut(s) 444, 930, 1052
ApeKI GCWGC 2 cut(s) 600, 794
ApoI RAATTY 2 cut(s) 963, 1218
ArsI GACNNNNNNTTYG 2 cut(s) 983, 1015
AspLEI GCGC 2 cut(s) 347, 609
AspS9I GGNCC 5 cut(s) 334, 550, 571, 931, 1053
AsuHPI GGTGA 5 cut(s) 86, 499, 758, 844, 1207
AvaI CYCGRG 2 cut(s) 70, 610
AvaII GGWCC 3 cut(s) 334, 550, 571
BanII GRGCYC 3 cut(s) 77, 279, 378
BbsI GAAGAC 1 cut(s) 455
Bbv12I GWGCWC 4 cut(s) 77, 279, 378, 1235
BbvCI CCTCAGC 1 cut(s) 813
BbvI GCAGC 2 cut(s) 587, 781
BccI CCATC 4 cut(s) 99, 311, 458, 728
BceAI ACGGC 5 cut(s) 42, 197, 238, 328, 1067
BcgI CGANNNNNNTGC 4 cut(s) 304, 338, 822, 856
BciT130I CCWGG 2 cut(s) 548, 883
BciVI GTATCC 1 cut(s) 1041
BclI TGATCA 1 cut(s) 1108
BcoDI GTCTC 2 cut(s) 433, 1253
BfmI CTRYAG 1 cut(s) 1280
BfuAI ACCTGC 1 cut(s) 258
BfuI GTATCC 1 cut(s) 1041
BisI GCNGC 6 cut(s) 229, 348, 351, 601, 795, 1271
BlsI GCNGC 6 cut(s) 230, 349, 352, 602, 796, 1272
Bme1390I CCNGG 2 cut(s) 548, 883
Bme18I GGWCC 3 cut(s) 334, 550, 571
BmeRI GACNNNNNGTC 1 cut(s) 253
BmeT110I CYCGRG 2 cut(s) 70, 610
BmgBI CACGTC 2 cut(s) 505, 583
BmgT120I GGNCC 5 cut(s) 334, 550, 571, 931, 1053
BmiI GGNNCC 2 cut(s) 220, 336
BmrFI CCNGG 2 cut(s) 548, 883
BmrI ACTGGG 1 cut(s) 1050
BmsI GCATC 3 cut(s) 273, 751, 781
BmuI ACTGGG 1 cut(s) 1050
BpiI GAAGAC 1 cut(s) 455
BplI GAGNNNNNCTC 4 cut(s) 323, 355, 748, 780
BpmI CTGGAG 2 cut(s) 263, 452
Bpu10I CCTNAGC 1 cut(s) 813
BpuEI CTTGAG 2 cut(s) 272, 476
Bsa29I ATCGAT 1 cut(s) 832
BsaHI GRCGYC 2 cut(s) 534, 1025
BsaJI CCNNGG 1 cut(s) 858
BsaWI WCCGGW 2 cut(s) 370, 1081
BsaXI ACNNNNNCTCC 2 cut(s) 140, 170
Bsc4I CCNNNNNNNGG 1 cut(s) 1171
Bse118I RCCGGY 1 cut(s) 922
Bse1I ACTGG 3 cut(s) 262, 813, 1056
BseAI TCCGGA 1 cut(s) 370
BseBI CCWGG 2 cut(s) 548, 883
BseCI ATCGAT 1 cut(s) 832
BseDI CCNNGG 1 cut(s) 858
BseGI GGATG 7 cut(s) 129, 173, 303, 498, 720, 796, 877
BseLI CCNNNNNNNGG 1 cut(s) 1171
BseMII CTCAG 3 cut(s) 624, 804, 1269
BseNI ACTGG 3 cut(s) 262, 813, 1056
BseRI GAGGAG 3 cut(s) 101, 160, 1193
BseXI GCAGC 2 cut(s) 587, 781
BsgI GTGCAG 2 cut(s) 586, 676
Bsh1236I CGCG 4 cut(s) 231, 326, 345, 607
Bsh1285I CGRYCG 1 cut(s) 382
BshFI GGCC 3 cut(s) 446, 932, 1054
BshVI ATCGAT 1 cut(s) 832
BsiEI CGRYCG 1 cut(s) 382
BsiHKAI GWGCWC 4 cut(s) 77, 279, 378, 1235
BsiHKCI CYCGRG 2 cut(s) 70, 610
BsiSI CCGG 5 cut(s) 371, 869, 923, 1028, 1082
BslFI GGGAC 2 cut(s) 320, 876
BslI CCNNNNNNNGG 1 cut(s) 1171
BsmAI GTCTC 2 cut(s) 433, 1253
BsmBI CGTCTC 1 cut(s) 433
BsmFI GGGAC 2 cut(s) 320, 876
BsnI GGCC 3 cut(s) 446, 932, 1054
BsoBI CYCGRG 2 cut(s) 70, 610
Bsp1286I GDGCHC 4 cut(s) 77, 279, 378, 1235
Bsp13I TCCGGA 1 cut(s) 370
Bsp143I GATC 5 cut(s) 270, 474, 817, 946, 1108
BspANI GGCC 3 cut(s) 446, 932, 1054
BspCNI CTCAG 3 cut(s) 625, 805, 1268
BspDI ATCGAT 1 cut(s) 832
BspEI TCCGGA 1 cut(s) 370
BspFNI CGCG 4 cut(s) 231, 326, 345, 607
BspLI GGNNCC 2 cut(s) 220, 336
BspMAI CTGCAG 1 cut(s) 1284
BspMI ACCTGC 1 cut(s) 258
BspPI GGATC 3 cut(s) 469, 825, 941
BspQI GCTCTTC 1 cut(s) 548
BsrBI CCGCTC 1 cut(s) 127
BsrFI RCCGGY 1 cut(s) 922
BsrI ACTGG 3 cut(s) 262, 813, 1056
BssAI RCCGGY 1 cut(s) 922
BssECI CCNNGG 1 cut(s) 858
BssMI GATC 5 cut(s) 270, 474, 817, 946, 1108
BssNI GRCGYC 2 cut(s) 534, 1025
BssT1I CCWWGG 1 cut(s) 858
Bst2UI CCWGG 2 cut(s) 548, 883
Bst4CI ACNGT 5 cut(s) 37, 320, 436, 944, 1010
Bst6I CTCTTC 2 cut(s) 184, 548
BstACI GRCGYC 2 cut(s) 534, 1025
BstC8I GCNNGC 1 cut(s) 605
BstDEI CTNAG 3 cut(s) 633, 813, 1255
BstF5I GGATG 7 cut(s) 129, 173, 303, 498, 720, 796, 877
BstFNI CGCG 4 cut(s) 231, 326, 345, 607
BstHHI GCGC 2 cut(s) 347, 609
BstKTI GATC 5 cut(s) 273, 477, 820, 949, 1111
BstMAI GTCTC 2 cut(s) 433, 1253
BstMBI GATC 5 cut(s) 270, 474, 817, 946, 1108
BstMCI CGRYCG 1 cut(s) 382
BstMWI GCNNNNNNNGC 7 cut(s) 209, 225, 237, 283, 606, 1239, 1279
BstNI CCWGG 2 cut(s) 548, 883
BstNSI RCATGY 1 cut(s) 1000
BstSCI CCNGG 2 cut(s) 546, 881
BstSFI CTRYAG 1 cut(s) 1280
BstUI CGCG 4 cut(s) 231, 326, 345, 607
BstV1I GCAGC 2 cut(s) 587, 781
BstV2I GAAGAC 1 cut(s) 455
BstXI CCANNNNNNTGG 1 cut(s) 1063
Bsu15I ATCGAT 1 cut(s) 832
BsuI GTATCC 1 cut(s) 1041
BsuRI GGCC 3 cut(s) 446, 932, 1054
BsuTUI ATCGAT 1 cut(s) 832
BtgZI GCGATG 1 cut(s) 610
BtrI CACGTC 2 cut(s) 505, 583
BtsCI GGATG 7 cut(s) 129, 173, 303, 498, 720, 796, 877
BtsI GCAGTG 1 cut(s) 1094
BtsIMutI CAGTG 4 cut(s) 949, 1015, 1063, 1094
BveI ACCTGC 1 cut(s) 258
Cac8I GCNNGC 1 cut(s) 605
CfoI GCGC 2 cut(s) 347, 609
Cfr10I RCCGGY 1 cut(s) 922
Cfr13I GGNCC 5 cut(s) 334, 550, 571, 931, 1053
ClaI ATCGAT 1 cut(s) 832
CseI GACGC 2 cut(s) 565, 1033
Csp6I GTAC 1 cut(s) 1072
CviAII CATG 1 cut(s) 997
CviQI GTAC 1 cut(s) 1072
DdeI CTNAG 3 cut(s) 633, 813, 1255
DpnI GATC 5 cut(s) 272, 476, 819, 948, 1110
DpnII GATC 5 cut(s) 270, 474, 817, 946, 1108
DrdI GACNNNNNNGTC 1 cut(s) 212
DriI GACNNNNNGTC 1 cut(s) 253
DseDI GACNNNNNNGTC 1 cut(s) 212
Eam1104I CTCTTC 2 cut(s) 184, 548
Eam1105I GACNNNNNGTC 1 cut(s) 253
EarI CTCTTC 2 cut(s) 184, 548
EciI GGCGGA 4 cut(s) 20, 148, 401, 726
Ecl136II GAGCTC 3 cut(s) 75, 277, 376
Eco130I CCWWGG 1 cut(s) 858
Eco24I GRGCYC 3 cut(s) 77, 279, 378
Eco47I GGWCC 3 cut(s) 334, 550, 571
Eco53kI GAGCTC 3 cut(s) 75, 277, 376
Eco88I CYCGRG 2 cut(s) 70, 610
EcoICRI GAGCTC 3 cut(s) 75, 277, 376
EcoO109I RGGNCCY 1 cut(s) 334
EcoRII CCWGG 2 cut(s) 546, 881
EcoT14I CCWWGG 1 cut(s) 858
EcoT38I GRGCYC 3 cut(s) 77, 279, 378
ErhI CCWWGG 1 cut(s) 858
Esp3I CGTCTC 1 cut(s) 433
FaeI CATG 1 cut(s) 1000
FaqI GGGAC 2 cut(s) 320, 876
FatI CATG 1 cut(s) 996
FauI CCCGC 2 cut(s) 132, 732
FbaI TGATCA 1 cut(s) 1108
FblI GTMKAC 1 cut(s) 61
Fnu4HI GCNGC 6 cut(s) 229, 348, 351, 601, 795, 1271
FokI GGATG 7 cut(s) 116, 160, 290, 485, 707, 803, 884
FriOI GRGCYC 3 cut(s) 77, 279, 378
Fsp4HI GCNGC 6 cut(s) 229, 348, 351, 601, 795, 1271
GlaI GCGC 2 cut(s) 346, 608
GluI GCNGC 6 cut(s) 229, 348, 351, 601, 795, 1271
GsuI CTGGAG 2 cut(s) 263, 452
HaeIII GGCC 3 cut(s) 446, 932, 1054
HapII CCGG 5 cut(s) 371, 869, 923, 1028, 1082
HgaI GACGC 2 cut(s) 565, 1033
HhaI GCGC 2 cut(s) 347, 609
Hin1I GRCGYC 2 cut(s) 534, 1025
Hin1II CATG 1 cut(s) 1000
Hin6I GCGC 2 cut(s) 345, 607
HinP1I GCGC 2 cut(s) 345, 607
HincII GTYRAC 2 cut(s) 62, 1098
HindII GTYRAC 2 cut(s) 62, 1098
HindIII AAGCTT 1 cut(s) 1224
HinfI GANTC 2 cut(s) 566, 1186
HpaII CCGG 5 cut(s) 371, 869, 923, 1028, 1082
HphI GGTGA 5 cut(s) 86, 499, 758, 844, 1207
Hpy166II GTNNAC 3 cut(s) 62, 940, 1098
Hpy188I TCNGA 5 cut(s) 79, 268, 565, 634, 1258
Hpy188III TCNNGA 5 cut(s) 103, 280, 371, 493, 1112
Hpy8I GTNNAC 3 cut(s) 62, 940, 1098
Hpy99I CGWCG 7 cut(s) 63, 86, 149, 218, 314, 536, 1027
HpyAV CCTTC 3 cut(s) 109, 631, 781
HpyCH4III ACNGT 5 cut(s) 37, 320, 436, 944, 1010
HpyCH4IV ACGT 4 cut(s) 426, 504, 534, 582
HpyCH4V TGCA 6 cut(s) 603, 693, 754, 843, 878, 1282
HpyF10VI GCNNNNNNNGC 7 cut(s) 209, 225, 237, 283, 606, 1239, 1279
HpyF3I CTNAG 3 cut(s) 633, 813, 1255
HpySE526I ACGT 4 cut(s) 426, 504, 534, 582
Hsp92I GRCGYC 2 cut(s) 534, 1025
Hsp92II CATG 1 cut(s) 1000
HspAI GCGC 2 cut(s) 345, 607
Kpn2I TCCGGA 1 cut(s) 370
Ksp22I TGATCA 1 cut(s) 1108
Kzo9I GATC 5 cut(s) 270, 474, 817, 946, 1108
LguI GCTCTTC 1 cut(s) 548
LmnI GCTCC 7 cut(s) 161, 224, 282, 373, 1084, 1180, 1285
Lsp1109I GCAGC 2 cut(s) 587, 781
LweI GCATC 3 cut(s) 273, 751, 781
MaeII ACGT 4 cut(s) 426, 504, 534, 582
MaeIII GTNAC 3 cut(s) 505, 515, 850
MalI GATC 5 cut(s) 272, 476, 819, 948, 1110
MbiI CCGCTC 1 cut(s) 127
MboI GATC 5 cut(s) 270, 474, 817, 946, 1108
MboII GAAGA 9 cut(s) 61, 171, 174, 455, 535, 910, 1003, 1157, 1168
MhlI GDGCHC 4 cut(s) 77, 279, 378, 1235
MluCI AATT 4 cut(s) 911, 963, 1015, 1218
MlyI GAGTC 1 cut(s) 1180
MmeI TCCRAC 2 cut(s) 246, 1119
MroI TCCGGA 1 cut(s) 370
MseI TTAA 1 cut(s) 1119
MslI CAYNNNNRTG 1 cut(s) 698
MspA1I CMGCKG 1 cut(s) 472
MspI CCGG 5 cut(s) 371, 869, 923, 1028, 1082
MspR9I CCNGG 2 cut(s) 548, 883
MvaI CCWGG 2 cut(s) 548, 883
MvnI CGCG 4 cut(s) 231, 326, 345, 607
MwoI GCNNNNNNNGC 7 cut(s) 209, 225, 237, 283, 606, 1239, 1279
NdeII GATC 5 cut(s) 270, 474, 817, 946, 1108
NlaIII CATG 1 cut(s) 1000
NlaIV GGNNCC 2 cut(s) 220, 336
NmuCI GTSAC 3 cut(s) 505, 515, 850
NspI RCATGY 1 cut(s) 1000
PaeR7I CTCGAG 1 cut(s) 610
PciI ACATGT 1 cut(s) 996
PciSI GCTCTTC 1 cut(s) 548
PcsI WCGNNNNNNNCGW 1 cut(s) 432
PfeI GAWTC 1 cut(s) 566
PflFI GACNNNGTC 1 cut(s) 559
PfoI TCCNGGA 1 cut(s) 546
PkrI GCNGC 6 cut(s) 230, 349, 352, 602, 796, 1272
PleI GAGTC 1 cut(s) 1180
PpsI GAGTC 1 cut(s) 1180
PpuMI RGGWCCY 1 cut(s) 334
PscI ACATGT 1 cut(s) 996
Psp124BI GAGCTC 3 cut(s) 77, 279, 378
Psp5II RGGWCCY 1 cut(s) 334
Psp6I CCWGG 2 cut(s) 546, 881
PspGI CCWGG 2 cut(s) 546, 881
PspN4I GGNNCC 2 cut(s) 220, 336
PspPI GGNCC 5 cut(s) 334, 550, 571, 931, 1053
PspPPI RGGWCCY 1 cut(s) 334
PspXI VCTCGAGB 1 cut(s) 610
PstI CTGCAG 1 cut(s) 1284
PsyI GACNNNGTC 1 cut(s) 559
PvuII CAGCTG 1 cut(s) 472
RsaI GTAC 1 cut(s) 1073
RsaNI GTAC 1 cut(s) 1072
RseI CAYNNNNRTG 1 cut(s) 698
SacI GAGCTC 3 cut(s) 77, 279, 378
SalI GTCGAC 1 cut(s) 60
SapI GCTCTTC 1 cut(s) 548
SaqAI TTAA 1 cut(s) 1119
SatI GCNGC 6 cut(s) 229, 348, 351, 601, 795, 1271
Sau3AI GATC 5 cut(s) 270, 474, 817, 946, 1108
Sau96I GGNCC 5 cut(s) 334, 550, 571, 931, 1053
SchI GAGTC 1 cut(s) 1180
ScrFI CCNGG 2 cut(s) 548, 883
SduI GDGCHC 4 cut(s) 77, 279, 378, 1235
SfaNI GCATC 3 cut(s) 273, 751, 781
SfcI CTRYAG 1 cut(s) 1280
Sfr274I CTCGAG 1 cut(s) 610
SinI GGWCC 3 cut(s) 334, 550, 571
SlaI CTCGAG 1 cut(s) 610
SmiMI CAYNNNNRTG 1 cut(s) 698
SmlI CTYRAG 3 cut(s) 287, 491, 610
SmoI CTYRAG 3 cut(s) 287, 491, 610
Sse9I AATT 4 cut(s) 911, 963, 1015, 1218
SspI AATATT 1 cut(s) 733
SstI GAGCTC 3 cut(s) 77, 279, 378
StyD4I CCNGG 2 cut(s) 546, 881
StyI CCWWGG 1 cut(s) 858
TaaI ACNGT 5 cut(s) 37, 320, 436, 944, 1010
TaiI ACGT 4 cut(s) 429, 507, 537, 585
TaqII GACCGA 1 cut(s) 559
TasI AATT 4 cut(s) 911, 963, 1015, 1218
TatI WGTACW 1 cut(s) 1071
TauI GCSGC 4 cut(s) 231, 350, 353, 1273
TfiI GAWTC 1 cut(s) 566
Tru1I TTAA 1 cut(s) 1119
Tru9I TTAA 1 cut(s) 1119
TscAI CASTG 4 cut(s) 949, 1015, 1063, 1094
TseFI GTSAC 3 cut(s) 505, 515, 850
TseI GCWGC 2 cut(s) 600, 794
Tsp45I GTSAC 3 cut(s) 505, 515, 850
TspDTI ATGAA 1 cut(s) 917
TspGWI ACGGA 2 cut(s) 247, 828
TspRI CASTG 4 cut(s) 949, 1015, 1063, 1094
Tth111I GACNNNGTC 1 cut(s) 559
VpaK11BI GGWCC 3 cut(s) 334, 550, 571
XapI RAATTY 2 cut(s) 963, 1218
XceI RCATGY 1 cut(s) 1000
XhoI CTCGAG 1 cut(s) 610
XmiI GTMKAC 1 cut(s) 61
ZraI GACGTC 1 cut(s) 535
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.