Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0003556.1

Orthogroup ID

OG0006264

Physical Location & Seq

Genomic Coordinates Reverse (-)

36199 .. 36582

Gene Structure 384 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0003556.1_g000009.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 384 bp

atgcagcggaagttaaatcttccagtagttgcccttggagatcacaatgccggtggctttaatatttatttgacctatttgtgcgggagtgagaatatggcgtacgactccttaaacttaagcacaccagatattaagtggttgggtttgagtccttcagacctcatcgaacatgatatacccaatgggaatgagaaggtgcaaggacttgaaacaatcatgaagaaggattttgtcaagaaaactccgaaattggtcgaggaggtaagaaaaatggaaactaaagtcgacgttgagggtatgatgagaaagcacctcaaatatttgaccgagatatatctgccactaaaattccaaaggttgggcatgagtgattcggtataa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000228 GO:0000280 GO:0000706 GO:0000729 GO:0001708 GO:0003674 GO:0003676 GO:0003677 GO:0003824 GO:0003916 GO:0003918 GO:0004518 GO:0004519 GO:0004520 GO:0004536 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005694 GO:0006139 GO:0006259 GO:0006281 GO:0006302 GO:0006310 GO:0006725 GO:0006807 GO:0006950 GO:0006974 GO:0006996 GO:0007049 GO:0007127 GO:0007131 GO:0008094 GO:0008150 GO:0008152 GO:0008544 GO:0009888 GO:0009913 GO:0009957 GO:0009987 GO:0016043 GO:0016462 GO:0016787 GO:0016788 GO:0016817 GO:0016818 GO:0016853 GO:0016887 GO:0016889 GO:0016894 GO:0017111 GO:0022402 GO:0022414 GO:0030154 GO:0030855 GO:0031974 GO:0031981 GO:0032502 GO:0033554 GO:0034641 GO:0035825 GO:0042138 GO:0042623 GO:0042802 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044237 GO:0044238 GO:0044260 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0045165 GO:0046483 GO:0048285 GO:0048856 GO:0048869 GO:0050896 GO:0051321 GO:0051716 GO:0060429 GO:0061505 GO:0061982 GO:0070013 GO:0071704 GO:0071840 GO:0090304 GO:0090305 GO:0097159 GO:0140013 GO:0140097 GO:1901360 GO:1901363 GO:1903046

KEGG Pathways

Metabolic & Signaling

ko04113 map04113

Pfam Domains

Protein Families

TP6A_N

Protein Analysis

127

Amino Acids

14.47

Weight (kDa)

6.83

Isoelectric Point (pI)

37.82

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006264)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G02820
fragaria_vesca	FvH4_1g22710 FvH4_1g22710 FvH4_1g22710 FvH4_1g22710 FvH4_2g03881 FvH4_6g05151
malus_domestica	MD04G1113900.v1.1
prunus_persica	Prupe.6G243200_v2.0.a1
pyrus_communis	pycom04g10130
rosa_chinensis	RchiOBHm_Chr2g0103111 RchiOBHm_Chr2g0116961 RchiOBHm_Chr3g0453711
rosa_laevigata	RLG00000018316
rosa_multiflora	Rmu_sc0003556.1_g000009 Rmu_sc0011969.1_g000014 Rmu_ssc0000238.1_g000021 Rmu_ssc0000238.1_g000022
rosa_roxburghii	Rroxscaffold_2G00126860 Rroxscaffold_6G00430630
rosa_rugosa	Rorug02G0209000.1
rosa_samantha	Rh2AG265100 Rh2BG276800 Rh2DG272500 Rh2DG291500
rosa_wichuraiana	Rw2G020900 Rw3G004140

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	361
AccI	GTMKAC	1 cut(s)	288
AciI	CCGC	2 cut(s)	7, 84
AcsI	RAATTY	1 cut(s)	350
AcuI	CTGAAG	1 cut(s)	141
AfaI	GTAC	1 cut(s)	104
AfiI	CCNNNNNNNGG	1 cut(s)	361
AflII	CTTAAG	1 cut(s)	118
AgsI	TTSAA	1 cut(s)	212
ApeKI	GCWGC	1 cut(s)	4
ApoI	RAATTY	1 cut(s)	350
BbvI	GCAGC	1 cut(s)	16
BfrI	CTTAAG	1 cut(s)	118
BisI	GCNGC	1 cut(s)	5
BlsI	GCNGC	1 cut(s)	6
BsaJI	CCNNGG	1 cut(s)	34
Bsc4I	CCNNNNNNNGG	1 cut(s)	361
Bse118I	RCCGGY	1 cut(s)	50
Bse1I	ACTGG	1 cut(s)	23
BseDI	CCNNGG	1 cut(s)	34
BseLI	CCNNNNNNNGG	1 cut(s)	361
BseNI	ACTGG	1 cut(s)	23
BseRI	GAGGAG	1 cut(s)	275
BseXI	GCAGC	1 cut(s)	16
BsiSI	CCGG	1 cut(s)	51
BsiWI	CGTACG	1 cut(s)	102
BslI	CCNNNNNNNGG	1 cut(s)	361
Bsp143I	GATC	1 cut(s)	40
BspACI	CCGC	2 cut(s)	7, 84
BspHI	TCATGA	1 cut(s)	219
BspTI	CTTAAG	1 cut(s)	118
BsrFI	RCCGGY	1 cut(s)	50
BsrI	ACTGG	1 cut(s)	23
BssAI	RCCGGY	1 cut(s)	50
BssECI	CCNNGG	1 cut(s)	34
BssMI	GATC	1 cut(s)	40
BssT1I	CCWWGG	1 cut(s)	34
BstAFI	CTTAAG	1 cut(s)	118
BstKTI	GATC	1 cut(s)	43
BstMBI	GATC	1 cut(s)	40
BstV1I	GCAGC	1 cut(s)	16
CciI	TCATGA	1 cut(s)	219
Cfr10I	RCCGGY	1 cut(s)	50
Csp6I	GTAC	1 cut(s)	103
CspCI	CAANNNNNGTGG	2 cut(s)	34, 69
CviAII	CATG	3 cut(s)	173, 220, 367
CviJI	RGCY	1 cut(s)	57
CviKI_1	RGCY	1 cut(s)	57
CviQI	GTAC	1 cut(s)	103
DpnI	GATC	1 cut(s)	42
DpnII	GATC	1 cut(s)	40
Eco130I	CCWWGG	1 cut(s)	34
Eco57I	CTGAAG	1 cut(s)	141
EcoT14I	CCWWGG	1 cut(s)	34
ErhI	CCWWGG	1 cut(s)	34
FaeI	CATG	3 cut(s)	176, 223, 370
FaiI	YATR	8 cut(s)	98, 174, 179, 221, 302, 337, 368, 382
FatI	CATG	3 cut(s)	172, 219, 366
FauI	CCCGC	1 cut(s)	77
FblI	GTMKAC	1 cut(s)	288
Fnu4HI	GCNGC	1 cut(s)	5
Fsp4HI	GCNGC	1 cut(s)	5
GluI	GCNGC	1 cut(s)	5
HapII	CCGG	1 cut(s)	51
Hin1II	CATG	3 cut(s)	176, 223, 370
HincII	GTYRAC	1 cut(s)	289
HindII	GTYRAC	1 cut(s)	289
HinfI	GANTC	3 cut(s)	107, 151, 374
HpaII	CCGG	1 cut(s)	51
Hpy166II	GTNNAC	1 cut(s)	289
Hpy188I	TCNGA	2 cut(s)	160, 249
Hpy188III	TCNNGA	2 cut(s)	220, 238
Hpy8I	GTNNAC	1 cut(s)	289
Hpy99I	CGWCG	1 cut(s)	293
HpyAV	CCTTC	3 cut(s)	165, 190, 220
HpyCH4IV	ACGT	1 cut(s)	291
HpyCH4V	TGCA	2 cut(s)	4, 202
HpySE526I	ACGT	1 cut(s)	291
Hsp92II	CATG	3 cut(s)	176, 223, 370
Kzo9I	GATC	1 cut(s)	40
LpnPI	CCDG	3 cut(s)	36, 64, 141
Lsp1109I	GCAGC	1 cut(s)	16
MaeII	ACGT	1 cut(s)	291
MalI	GATC	1 cut(s)	42
MboI	GATC	1 cut(s)	40
MboII	GAAGA	2 cut(s)	11, 235
MluCI	AATT	2 cut(s)	251, 350
MlyI	GAGTC	2 cut(s)	101, 160
MnlI	CCTC	5 cut(s)	173, 253, 256, 289, 326
MseI	TTAA	5 cut(s)	14, 60, 113, 119, 135
MspA1I	CMGCKG	1 cut(s)	7
MspCI	CTTAAG	1 cut(s)	118
MspI	CCGG	1 cut(s)	51
NdeII	GATC	1 cut(s)	40
NlaIII	CATG	3 cut(s)	176, 223, 370
PagI	TCATGA	1 cut(s)	219
PfeI	GAWTC	1 cut(s)	374
Pfl23II	CGTACG	1 cut(s)	102
PflMI	CCANNNNNTGG	1 cut(s)	361
PkrI	GCNGC	1 cut(s)	6
PleI	GAGTC	2 cut(s)	101, 159
PpsI	GAGTC	2 cut(s)	101, 159
PspLI	CGTACG	1 cut(s)	102
PsrI	GAACNNNNNNTAC	2 cut(s)	162, 194
RsaI	GTAC	1 cut(s)	104
RsaNI	GTAC	1 cut(s)	103
SalI	GTCGAC	1 cut(s)	287
SaqAI	TTAA	5 cut(s)	14, 60, 113, 119, 135
SatI	GCNGC	1 cut(s)	5
Sau3AI	GATC	1 cut(s)	40
SchI	GAGTC	2 cut(s)	101, 160
SetI	ASST	7 cut(s)	77, 165, 201, 267, 294, 318, 362
SmlI	CTYRAG	1 cut(s)	118
SmoI	CTYRAG	1 cut(s)	118
Sse9I	AATT	2 cut(s)	251, 350
SsiI	CCGC	2 cut(s)	7, 84
SspI	AATATT	2 cut(s)	64, 323
StyI	CCWWGG	1 cut(s)	34
TaiI	ACGT	1 cut(s)	294
TaqI	TCGA	3 cut(s)	168, 258, 288
TaqII	GACCGA	1 cut(s)	344
TasI	AATT	2 cut(s)	251, 350
TfiI	GAWTC	1 cut(s)	374
Tru1I	TTAA	5 cut(s)	14, 60, 113, 119, 135
Tru9I	TTAA	5 cut(s)	14, 60, 113, 119, 135
TseI	GCWGC	1 cut(s)	4
TspDTI	ATGAA	1 cut(s)	236
Van91I	CCANNNNNTGG	1 cut(s)	361
Vha464I	CTTAAG	1 cut(s)	118
XapI	RAATTY	1 cut(s)	350
XcmI	CCANNNNNNNNNTGG	1 cut(s)	135
XmiI	GTMKAC	1 cut(s)	288

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.