AT5G03880

Glutathione S-transferase, N-terminal domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
5
OG0007313
Physical Location & Seq
Reverse (-)
1038381 .. 1041480
3100 bp
Loading structure...
UTR
Exon/CDS
Intron
AT5G03880.1

Sequence Viewer

Length: 1020 bp
ATGGCGGGGATACTAGTGAACAATATCCTCCCTCAACCTCCGATTCTCCGATCGCTTTCTTCTTCTTCGCGAAGAAGTTCAATTCGAACCCTAGTTATGGTCAAAGCTTCTTCCTCTGAACCTTCCGAGTCTGTTTCAGTCTCCACGAAGACCAGTGACGACACTGGAGCTGTTGTTGTGTTCACTGCTCCTCCTGGTTTCAAGCCACCGGAGCCAAAACGGTTCGCCGTCAAATCCGGAAAACTCTTCGATGTCTTGGGTGCAGCAATTGGATTGTTTTTCCGATTCGGCACTGGTGTTTTCGTTTCTGGGTACTCTGCATCTTTTGTGTCTAAGGAAGAGATTCCAGCTGATCAGTATGCGTTGCGTTTAGGCGGGATCACGGTAAAGGAAACTGCTAAGGTCGGGCCTCGTCCTGAGAAACCCATTGAGATATATGAGTTTGAAGGCTGTCCCTTCTGCCGGAAGGTCAGGGAAATGGTTGCAGTGTTGGATCTTGATATTCTCTACTATCCTTGTCCAAGAGGGAGTCCAAATTTCCGCCCGAAGGTTAAACAGATGGGCGGGAAACAACAGTTTCCGTACATGGTTGATCCCAATACCGGAGTGTCCATGTATGAATCAGATGGAATCATCAAATATCTATCCGAGAAATATGGAGATGGAACAGTTCCTTTAAGTCTGTCACTTGGTGCTTTAACGGCTATAACAGCAGGCTTTGCAATGATTGGTCGTATGGGAAAGGGTAACTTGTACACACCAGCGAAACTACCACCTAAGCCACTCGAATTCTGGGCATATGAGGGTTCTCCGTTTTGTAAGCTTGTACGCGAAGTTCTTGTAGAACTGGAGTTACCACACATTCAGCGCAGTTGTGCTCGTGGTAGCCCCAAACGGCAGGTATTGCTTGAGAAAGCTGGTCACTTTCAGGTGCCTTACCTGGAAGATCCAAACACTGGAGTCGCGATGTTTGAGAGTGCAGAAATTGTTGAGTATCTCAAGCAAACTTATGCTGCCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
GST_N_3

Protein Analysis

339

Amino Acids

37.04

Weight (kDa)

9.01

Isoelectric Point (pI)

49.1

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
GST_N_3 PF13417 146 - 220 1.5e-16 Glutathione S-transferase, N-terminal domain
GST_N_2 PF13409 151 - 217 3.4e-06 Glutathione S-transferase, N-terminal domain
GST_N_3 PF13417 267 - 338 2e-13 Glutathione S-transferase, N-terminal domain
GST_N_2 PF13409 270 - 334 4e-06 Glutathione S-transferase, N-terminal domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 889
AccB1I GGYRCC 1 cut(s) 931
AccB7I CCANNNNNTGG 1 cut(s) 956
AccII CGCG 3 cut(s) 70, 831, 965
AccIII TCCGGA 1 cut(s) 236
AciI CCGC 4 cut(s) 5, 375, 541, 564
AclWI GGATC 4 cut(s) 386, 501, 587, 941
AcsI RAATTY 2 cut(s) 535, 788
AdeI CACNNNGTG 1 cut(s) 692
AfaI GTAC 4 cut(s) 314, 584, 755, 828
AfiI CCNNNNNNNGG 5 cut(s) 97, 462, 547, 602, 956
AgsI TTSAA 3 cut(s) 81, 202, 446
AhlI ACTAGT 1 cut(s) 13
AjnI CCWGG 2 cut(s) 193, 939
AluBI AGCT 5 cut(s) 107, 170, 350, 823, 917
AluI AGCT 5 cut(s) 107, 170, 350, 823, 917
Alw21I GWGCWC 1 cut(s) 880
Alw26I GTCTC 1 cut(s) 145
AlwI GGATC 4 cut(s) 386, 501, 587, 941
Aor13HI TCCGGA 1 cut(s) 236
AoxI GGCC 1 cut(s) 407
ApeKI GCWGC 2 cut(s) 263, 1013
ApoI RAATTY 2 cut(s) 535, 788
Asp700I GAANNNNTTC 2 cut(s) 76, 342
AspLEI GCGC 1 cut(s) 870
AspS9I GGNCC 1 cut(s) 407
AsuII TTCGAA 1 cut(s) 85
BanI GGYRCC 1 cut(s) 931
BauI CACGAG 1 cut(s) 879
BbsI GAAGAC 1 cut(s) 155
Bbv12I GWGCWC 1 cut(s) 880
BbvI GCAGC 2 cut(s) 275, 1000
BccI CCATC 3 cut(s) 553, 620, 656
BceAI ACGGC 3 cut(s) 212, 717, 911
BciT130I CCWGG 2 cut(s) 195, 941
BciVI GTATCC 1 cut(s) 3
BclI TGATCA 1 cut(s) 352
BcoDI GTCTC 1 cut(s) 145
BcuI ACTAGT 1 cut(s) 13
BfaI CTAG 2 cut(s) 14, 92
BfuAI ACCTGC 1 cut(s) 889
BfuI GTATCC 1 cut(s) 3
BisI GCNGC 2 cut(s) 264, 1014
BlsI GCNGC 2 cut(s) 265, 1015
Bme1390I CCNGG 2 cut(s) 195, 941
BmgT120I GGNCC 1 cut(s) 407
BmiI GGNNCC 2 cut(s) 213, 933
BmrFI CCNGG 2 cut(s) 195, 941
BmsI GCATC 1 cut(s) 329
BpiI GAAGAC 1 cut(s) 155
BpmI CTGGAG 3 cut(s) 186, 869, 978
Bpu10I CCTNAGC 2 cut(s) 399, 777
Bpu14I TTCGAA 1 cut(s) 85
BpuEI CTTGAG 2 cut(s) 929, 983
BsaWI WCCGGW 3 cut(s) 208, 236, 602
BsaXI ACNNNNNCTCC 4 cut(s) 159, 175, 189, 205
Bsc4I CCNNNNNNNGG 5 cut(s) 97, 462, 547, 602, 956
Bse1I ACTGG 5 cut(s) 153, 169, 298, 852, 961
Bse3DI GCAATG 1 cut(s) 729
BseAI TCCGGA 1 cut(s) 236
BseBI CCWGG 2 cut(s) 195, 941
BseLI CCNNNNNNNGG 5 cut(s) 97, 462, 547, 602, 956
BseMI GCAATG 1 cut(s) 729
BseMII CTCAG 1 cut(s) 408
BseNI ACTGG 5 cut(s) 153, 169, 298, 852, 961
BseRI GAGGAG 1 cut(s) 180
BseXI GCAGC 2 cut(s) 275, 1000
BsgI GTGCAG 2 cut(s) 282, 999
Bsh1236I CGCG 3 cut(s) 70, 831, 965
Bsh1285I CGRYCG 1 cut(s) 53
BshFI GGCC 1 cut(s) 409
BshNI GGYRCC 1 cut(s) 931
BsiEI CGRYCG 1 cut(s) 53
BsiHKAI GWGCWC 1 cut(s) 880
BsiSI CCGG 4 cut(s) 209, 237, 463, 603
BslFI GGGAC 1 cut(s) 438
BslI CCNNNNNNNGG 5 cut(s) 97, 462, 547, 602, 956
BsmAI GTCTC 1 cut(s) 145
BsmFI GGGAC 1 cut(s) 438
BsnI GGCC 1 cut(s) 409
Bsp119I TTCGAA 1 cut(s) 85
Bsp1286I GDGCHC 1 cut(s) 880
Bsp13I TCCGGA 1 cut(s) 236
Bsp1407I TGTACA 1 cut(s) 753
Bsp143I GATC 6 cut(s) 50, 352, 378, 493, 592, 946
Bsp68I TCGCGA 2 cut(s) 70, 965
BspACI CCGC 4 cut(s) 5, 375, 541, 564
BspANI GGCC 1 cut(s) 409
BspCNI CTCAG 1 cut(s) 409
BspEI TCCGGA 1 cut(s) 236
BspFNI CGCG 3 cut(s) 70, 831, 965
BspLI GGNNCC 2 cut(s) 213, 933
BspMI ACCTGC 1 cut(s) 889
BspPI GGATC 4 cut(s) 386, 501, 587, 941
BspT104I TTCGAA 1 cut(s) 85
BspT107I GGYRCC 1 cut(s) 931
BsrDI GCAATG 1 cut(s) 729
BsrGI TGTACA 1 cut(s) 753
BsrI ACTGG 5 cut(s) 153, 169, 298, 852, 961
BssMI GATC 6 cut(s) 50, 352, 378, 493, 592, 946
BssSI CACGAG 1 cut(s) 879
Bst2BI CACGAG 1 cut(s) 879
Bst2UI CCWGG 2 cut(s) 195, 941
Bst4CI ACNGT 4 cut(s) 222, 385, 576, 670
Bst6I CTCTTC 2 cut(s) 251, 333
BstAPI GCANNNNNTGC 2 cut(s) 719, 904
BstAUI TGTACA 1 cut(s) 753
BstBI TTCGAA 1 cut(s) 85
BstC8I GCNNGC 1 cut(s) 715
BstDEI CTNAG 4 cut(s) 333, 399, 417, 777
BstFNI CGCG 3 cut(s) 70, 831, 965
BstHHI GCGC 1 cut(s) 870
BstKTI GATC 6 cut(s) 53, 355, 381, 496, 595, 949
BstMAI GTCTC 1 cut(s) 145
BstMBI GATC 6 cut(s) 50, 352, 378, 493, 592, 946
BstMCI CGRYCG 1 cut(s) 53
BstMWI GCNNNNNNNGC 5 cut(s) 211, 701, 710, 719, 904
BstNI CCWGG 2 cut(s) 195, 941
BstSCI CCNGG 2 cut(s) 193, 939
BstUI CGCG 3 cut(s) 70, 831, 965
BstV1I GCAGC 2 cut(s) 275, 1000
BstV2I GAAGAC 1 cut(s) 155
BstX2I RGATCY 2 cut(s) 493, 946
BstYI RGATCY 2 cut(s) 493, 946
BsuI GTATCC 1 cut(s) 3
BsuRI GGCC 1 cut(s) 409
BtgZI GCGATG 1 cut(s) 980
BtsI GCAGTG 2 cut(s) 183, 492
BtsIMutI CAGTG 6 cut(s) 160, 162, 183, 291, 492, 954
BtuMI TCGCGA 2 cut(s) 70, 965
BveI ACCTGC 1 cut(s) 889
Cac8I GCNNGC 1 cut(s) 715
CfoI GCGC 1 cut(s) 870
Cfr13I GGNCC 1 cut(s) 407
Csp6I GTAC 4 cut(s) 313, 583, 754, 827
CviAII CATG 2 cut(s) 586, 613
CviQI GTAC 4 cut(s) 313, 583, 754, 827
DdeI CTNAG 4 cut(s) 333, 399, 417, 777
DpnI GATC 6 cut(s) 52, 354, 380, 495, 594, 948
DpnII GATC 6 cut(s) 50, 352, 378, 493, 592, 946
DraIII CACNNNGTG 1 cut(s) 692
Eam1104I CTCTTC 2 cut(s) 251, 333
EarI CTCTTC 2 cut(s) 251, 333
EciI GGCGGA 1 cut(s) 530
EcoRI GAATTC 1 cut(s) 788
EcoRII CCWGG 2 cut(s) 193, 939
FaeI CATG 2 cut(s) 589, 616
FalI AAGNNNNNCTT 2 cut(s) 734, 766
FaqI GGGAC 1 cut(s) 438
FatI CATG 2 cut(s) 585, 612
FauI CCCGC 2 cut(s) 368, 557
FauNDI CATATG 1 cut(s) 799
FbaI TGATCA 1 cut(s) 352
Fnu4HI GCNGC 2 cut(s) 264, 1014
Fsp4HI GCNGC 2 cut(s) 264, 1014
FspBI CTAG 2 cut(s) 14, 92
GlaI GCGC 1 cut(s) 869
GluI GCNGC 2 cut(s) 264, 1014
GsuI CTGGAG 3 cut(s) 186, 869, 978
HaeIII GGCC 1 cut(s) 409
HapII CCGG 4 cut(s) 209, 237, 463, 603
HhaI GCGC 1 cut(s) 870
Hin1II CATG 2 cut(s) 589, 616
Hin6I GCGC 1 cut(s) 868
HinP1I GCGC 1 cut(s) 868
HindIII AAGCTT 2 cut(s) 105, 821
HinfI GANTC 8 cut(s) 43, 128, 285, 343, 529, 620, 630, 960
HpaII CCGG 4 cut(s) 209, 237, 463, 603
Hpy166II GTNNAC 3 cut(s) 19, 183, 756
Hpy188I TCNGA 7 cut(s) 42, 50, 118, 127, 284, 625, 649
Hpy188III TCNNGA 5 cut(s) 69, 237, 416, 497, 964
Hpy8I GTNNAC 3 cut(s) 19, 183, 756
HpyAV CCTTC 5 cut(s) 132, 440, 460, 466, 541
HpyCH4III ACNGT 4 cut(s) 222, 385, 576, 670
HpyCH4V TGCA 5 cut(s) 263, 320, 485, 722, 980
HpyF10VI GCNNNNNNNGC 5 cut(s) 211, 701, 710, 719, 904
HpyF3I CTNAG 4 cut(s) 333, 399, 417, 777
Hsp92II CATG 2 cut(s) 589, 616
HspAI GCGC 1 cut(s) 868
Kpn2I TCCGGA 1 cut(s) 236
Ksp22I TGATCA 1 cut(s) 352
Kzo9I GATC 6 cut(s) 50, 352, 378, 493, 592, 946
LmnI GCTCC 3 cut(s) 167, 193, 211
Lsp1109I GCAGC 2 cut(s) 275, 1000
LweI GCATC 1 cut(s) 329
MaeI CTAG 2 cut(s) 14, 92
MaeIII GTNAC 5 cut(s) 155, 684, 746, 852, 920
MalI GATC 6 cut(s) 52, 354, 380, 495, 594, 948
MboI GATC 6 cut(s) 50, 352, 378, 493, 592, 946
MboII GAAGA 9 cut(s) 51, 54, 57, 84, 102, 160, 238, 350, 956
MfeI CAATTG 1 cut(s) 267
MflI RGATCY 2 cut(s) 493, 946
MhlI GDGCHC 1 cut(s) 880
MluCI AATT 5 cut(s) 81, 267, 535, 788, 984
MlyI GAGTC 3 cut(s) 137, 538, 969
MmeI TCCRAC 1 cut(s) 471
MnlI CCTC 8 cut(s) 38, 42, 48, 124, 201, 420, 518, 796
MroI TCCGGA 1 cut(s) 236
MroXI GAANNNNTTC 2 cut(s) 76, 342
MseI TTAA 3 cut(s) 552, 677, 698
MspA1I CMGCKG 1 cut(s) 350
MspI CCGG 4 cut(s) 209, 237, 463, 603
MspR9I CCNGG 2 cut(s) 195, 941
MunI CAATTG 1 cut(s) 267
MvaI CCWGG 2 cut(s) 195, 941
MvnI CGCG 3 cut(s) 70, 831, 965
MwoI GCNNNNNNNGC 5 cut(s) 211, 701, 710, 719, 904
NdeI CATATG 1 cut(s) 799
NdeII GATC 6 cut(s) 50, 352, 378, 493, 592, 946
NlaIII CATG 2 cut(s) 589, 616
NlaIV GGNNCC 2 cut(s) 213, 933
NmuCI GTSAC 3 cut(s) 155, 684, 920
NruI TCGCGA 2 cut(s) 70, 965
NspV TTCGAA 1 cut(s) 85
PdmI GAANNNNTTC 2 cut(s) 76, 342
PfeI GAWTC 5 cut(s) 43, 285, 343, 620, 630
PflMI CCANNNNNTGG 1 cut(s) 956
PkrI GCNGC 2 cut(s) 265, 1015
Ple19I CGATCG 1 cut(s) 53
PleI GAGTC 3 cut(s) 136, 537, 968
PpsI GAGTC 3 cut(s) 136, 537, 968
Psp6I CCWGG 2 cut(s) 193, 939
PspGI CCWGG 2 cut(s) 193, 939
PspN4I GGNNCC 2 cut(s) 213, 933
PspPI GGNCC 1 cut(s) 407
PsrI GAACNNNNNNTAC 4 cut(s) 819, 837, 851, 869
PsuI RGATCY 2 cut(s) 493, 946
PvuI CGATCG 1 cut(s) 53
PvuII CAGCTG 1 cut(s) 350
RruI TCGCGA 2 cut(s) 70, 965
RsaI GTAC 4 cut(s) 314, 584, 755, 828
RsaNI GTAC 4 cut(s) 313, 583, 754, 827
SaqAI TTAA 3 cut(s) 552, 677, 698
SatI GCNGC 2 cut(s) 264, 1014
Sau3AI GATC 6 cut(s) 50, 352, 378, 493, 592, 946
Sau96I GGNCC 1 cut(s) 407
SchI GAGTC 3 cut(s) 137, 538, 969
ScrFI CCNGG 2 cut(s) 195, 941
SduI GDGCHC 1 cut(s) 880
SfaNI GCATC 1 cut(s) 329
SfuI TTCGAA 1 cut(s) 85
SmlI CTYRAG 2 cut(s) 908, 998
SmoI CTYRAG 2 cut(s) 908, 998
SpeI ACTAGT 1 cut(s) 13
Sse9I AATT 5 cut(s) 81, 267, 535, 788, 984
SsiI CCGC 4 cut(s) 5, 375, 541, 564
SspMI CTAG 2 cut(s) 14, 92
StyD4I CCNGG 2 cut(s) 193, 939
TaaI ACNGT 4 cut(s) 222, 385, 576, 670
TaqI TCGA 3 cut(s) 85, 249, 786
TasI AATT 5 cut(s) 81, 267, 535, 788, 984
TatI WGTACW 1 cut(s) 753
TfiI GAWTC 5 cut(s) 43, 285, 343, 620, 630
Tru1I TTAA 3 cut(s) 552, 677, 698
Tru9I TTAA 3 cut(s) 552, 677, 698
TscAI CASTG 6 cut(s) 160, 169, 190, 298, 492, 961
TseFI GTSAC 3 cut(s) 155, 684, 920
TseI GCWGC 2 cut(s) 263, 1013
Tsp45I GTSAC 3 cut(s) 155, 684, 920
TspDTI ATGAA 1 cut(s) 633
TspGWI ACGGA 2 cut(s) 570, 801
TspRI CASTG 6 cut(s) 160, 169, 190, 298, 492, 961
Van91I CCANNNNNTGG 1 cut(s) 956
XapI RAATTY 2 cut(s) 535, 788
XcmI CCANNNNNNNNNTGG 1 cut(s) 789
XmnI GAANNNNTTC 2 cut(s) 76, 342
XspI CTAG 2 cut(s) 14, 92
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.