Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr3B

Orthogroup ID

OG0007313

Physical Location & Seq

Genomic Coordinates Forward (+)

19379836 .. 19385193

Gene Structure 5358 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh3BG214900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 816 bp

ATGGCCAGAGCTCTGAACCTAATACCCACCTCAACTTTCCCGCCATTTTCATGCCCCAGAATACCCACAAGGAGATTACTCTCTGTTAGAGCCACAACAGAGTCCCCTGAGACGCCCACAAGTTCTTCAGCTTCAGTTCAGACCAAACCCGAAGAAGTAAAGCCTGAACCTTTAACATTTTCTCCTCCACCCAATTTCAAGGCTCCGGAGCCCAAGCGGTTCGGAGTCCGGCCCGATAAGTCTTTGGACGTGTTGGGTGCTTCTCTTGCCTTGTTCTTCCGATTGGGCTGTGGCGTTTTCGTTTCTGGGTATTCGGTTTCGTTTGTTCCGAAGGATGAGATTCCTCCAGACCAGTATGCTCTCGATTTCAATGATTCCAAGGTCAAGGAGACTTCAAAATTAGGACCACGGCCAGATAAGCCTGTTGAGATATATGAGTTTGAAGGCTGTCCATTCTGCCGAAAGGTTAGGGAAATTGTTGCAGTACTGGACCTTGATGTTATATTTTATCCCTGCCCAAGAAATGGTCCAAACTTCCGTCCAAAGGTTGGGGAGATGGGCGGCAAAAAGCAGTTTCCTTACATGGTGGATCCAAACACTGGAGTTTCAATGTACGAATCAGATGACATAATCAAGTACTTGGTTGGGAAGTATGGTGATGGAAATGTTCCTATTGCATTGTCTCTTGGTTTGTTGACGACTTTGACTGCTGGCCTTGCTCTGATTGGTCGCTCGGGAAAGGGAAGTATCTATACTCCATCAAAACTACCACCCAAACCACTAGAAATATGGGCATATGAGGTTAGACTATCATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

GST_N_3

Protein Analysis

271

Amino Acids

29.76

Weight (kDa)

8.85

Isoelectric Point (pI)

38.99

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
GST_N_3	PF13417	145 - 219	1.1e-15	Glutathione S-transferase, N-terminal domain
GST_N_2	PF13409	150 - 214	9.3e-08	Glutathione S-transferase, N-terminal domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007313)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G03880
fragaria_vesca	FvH4_6g18820 FvH4_6g18820 FvH4_6g18820 FvH4_6g18820 FvH4_6g18820 FvH4_6g18820 FvH4_6g18820
malus_domestica	MD12G1036800.v1.1 MD14G1023500.v1.1
prunus_persica	Prupe.7G109400_v2.0.a1 Prupe.7G109400_v2.0.a1 Prupe.7G109400_v2.0.a1
pyrus_communis	pycom12g02420 pycom14g02240
rosa_chinensis	RchiOBHm_Chr3g0473831
rosa_laevigata	RLG00000023980
rosa_multiflora	Rmu_sc0005561.1_g000004
rosa_roxburghii	Rroxscaffold_6G00407740
rosa_rugosa	Rorug03G0135800
rosa_samantha	Rh3AG186300 Rh3BG214900 Rh3CG211600 Rh3DG210700
rosa_wichuraiana	Rw3G017040

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	3 cut(s)	524, 548, 599
AccIII	TCCGGA	1 cut(s)	205
AciI	CCGC	3 cut(s)	41, 217, 561
AclWI	GGATC	2 cut(s)	584, 597
AcoI	YGGCCR	2 cut(s)	3, 410
AcuI	CTGAAG	2 cut(s)	111, 117
AcyI	GRCGYC	1 cut(s)	113
AfaI	GTAC	3 cut(s)	486, 614, 638
AfiI	CCNNNNNNNGG	4 cut(s)	524, 544, 548, 599
AflIII	ACRYGT	1 cut(s)	249
AgsI	TTSAA	5 cut(s)	199, 370, 396, 443, 609
AjiI	CACGTC	1 cut(s)	250
AluBI	AGCT	2 cut(s)	11, 131
AluI	AGCT	2 cut(s)	11, 131
Alw21I	GWGCWC	1 cut(s)	13
Alw26I	GTCTC	3 cut(s)	104, 383, 687
AlwI	GGATC	2 cut(s)	584, 597
Ama87I	CYCGRG	1 cut(s)	733
Aor13HI	TCCGGA	1 cut(s)	205
AoxI	GGCC	4 cut(s)	3, 230, 410, 712
AspS9I	GGNCC	4 cut(s)	231, 404, 490, 527
AsuHPI	GGTGA	1 cut(s)	668
AvaI	CYCGRG	1 cut(s)	733
AvaII	GGWCC	3 cut(s)	404, 490, 527
BalI	TGGCCA	1 cut(s)	5
BamHI	GGATCC	1 cut(s)	589
BanII	GRGCYC	2 cut(s)	13, 213
BarI	GAAGNNNNNNTAC	2 cut(s)	736, 768
Bbv12I	GWGCWC	1 cut(s)	13
BccI	CCATC	3 cut(s)	550, 653, 766
BceAI	ACGGC	1 cut(s)	425
BcoDI	GTCTC	3 cut(s)	104, 383, 687
BfaI	CTAG	1 cut(s)	782
BisI	GCNGC	1 cut(s)	562
BlsI	GCNGC	1 cut(s)	563
BmcAI	AGTACT	2 cut(s)	486, 638
Bme18I	GGWCC	3 cut(s)	404, 490, 527
BmeT110I	CYCGRG	1 cut(s)	733
BmgBI	CACGTC	1 cut(s)	250
BmgT120I	GGNCC	4 cut(s)	231, 404, 490, 527
BmiI	GGNNCC	3 cut(s)	204, 210, 591
BpmI	CTGGAG	2 cut(s)	330, 621
BsaHI	GRCGYC	1 cut(s)	113
BsaJI	CCNNGG	2 cut(s)	378, 407
BsaWI	WCCGGW	1 cut(s)	205
BsaXI	ACNNNNNCTCC	2 cut(s)	166, 196
Bsc4I	CCNNNNNNNGG	4 cut(s)	524, 544, 548, 599
Bse1I	ACTGG	3 cut(s)	352, 492, 604
BseAI	TCCGGA	1 cut(s)	205
BseDI	CCNNGG	2 cut(s)	378, 407
BseGI	GGATG	1 cut(s)	340
BseLI	CCNNNNNNNGG	4 cut(s)	524, 544, 548, 599
BseMII	CTCAG	1 cut(s)	99
BseNI	ACTGG	3 cut(s)	352, 492, 604
BseRI	GAGGAG	1 cut(s)	174
BshFI	GGCC	4 cut(s)	5, 232, 412, 714
BsiHKAI	GWGCWC	1 cut(s)	13
BsiHKCI	CYCGRG	1 cut(s)	733
BsiSI	CCGG	2 cut(s)	206, 229
BslFI	GGGAC	1 cut(s)	88
BslI	CCNNNNNNNGG	4 cut(s)	524, 544, 548, 599
BsmAI	GTCTC	3 cut(s)	104, 383, 687
BsmBI	CGTCTC	1 cut(s)	104
BsmFI	GGGAC	1 cut(s)	88
BsnI	GGCC	4 cut(s)	5, 232, 412, 714
BsoBI	CYCGRG	1 cut(s)	733
Bsp1286I	GDGCHC	2 cut(s)	13, 213
Bsp13I	TCCGGA	1 cut(s)	205
Bsp143I	GATC	1 cut(s)	589
BspACI	CCGC	3 cut(s)	41, 217, 561
BspANI	GGCC	4 cut(s)	5, 232, 412, 714
BspCNI	CTCAG	1 cut(s)	100
BspEI	TCCGGA	1 cut(s)	205
BspHI	TCATGA	1 cut(s)	812
BspLI	GGNNCC	3 cut(s)	204, 210, 591
BspPI	GGATC	2 cut(s)	584, 597
BsrI	ACTGG	3 cut(s)	352, 492, 604
BssECI	CCNNGG	2 cut(s)	378, 407
BssMI	GATC	1 cut(s)	589
BssNI	GRCGYC	1 cut(s)	113
BssT1I	CCWWGG	1 cut(s)	378
BstACI	GRCGYC	1 cut(s)	113
BstC8I	GCNNGC	1 cut(s)	712
BstDEI	CTNAG	1 cut(s)	108
BstDSI	CCRYGG	1 cut(s)	407
BstF5I	GGATG	1 cut(s)	340
BstKTI	GATC	1 cut(s)	592
BstMAI	GTCTC	3 cut(s)	104, 383, 687
BstMBI	GATC	1 cut(s)	589
BstMWI	GCNNNNNNNGC	3 cut(s)	266, 418, 716
BstX2I	RGATCY	1 cut(s)	589
BstYI	RGATCY	1 cut(s)	589
BsuRI	GGCC	4 cut(s)	5, 232, 412, 714
BtgI	CCRYGG	1 cut(s)	407
BtrI	CACGTC	1 cut(s)	250
BtsCI	GGATG	1 cut(s)	340
BtsIMutI	CAGTG	1 cut(s)	597
Cac8I	GCNNGC	1 cut(s)	712
CciI	TCATGA	1 cut(s)	812
Cfr13I	GGNCC	4 cut(s)	231, 404, 490, 527
CseI	GACGC	1 cut(s)	121
Csp6I	GTAC	3 cut(s)	485, 613, 637
CviAII	CATG	3 cut(s)	51, 583, 813
CviQI	GTAC	3 cut(s)	485, 613, 637
DdeI	CTNAG	1 cut(s)	108
DpnI	GATC	1 cut(s)	591
DpnII	GATC	1 cut(s)	589
EaeI	YGGCCR	2 cut(s)	3, 410
Ecl136II	GAGCTC	1 cut(s)	11
Eco130I	CCWWGG	1 cut(s)	378
Eco24I	GRGCYC	2 cut(s)	13, 213
Eco47I	GGWCC	3 cut(s)	404, 490, 527
Eco53kI	GAGCTC	1 cut(s)	11
Eco57I	CTGAAG	2 cut(s)	111, 117
Eco88I	CYCGRG	1 cut(s)	733
EcoICRI	GAGCTC	1 cut(s)	11
EcoT14I	CCWWGG	1 cut(s)	378
EcoT38I	GRGCYC	2 cut(s)	13, 213
ErhI	CCWWGG	1 cut(s)	378
Esp3I	CGTCTC	1 cut(s)	104
FaeI	CATG	3 cut(s)	54, 586, 816
FaqI	GGGAC	1 cut(s)	88
FatI	CATG	3 cut(s)	50, 582, 812
FauI	CCCGC	1 cut(s)	48
FauNDI	CATATG	1 cut(s)	796
Fnu4HI	GCNGC	1 cut(s)	562
FokI	GGATG	1 cut(s)	347
FriOI	GRGCYC	2 cut(s)	13, 213
Fsp4HI	GCNGC	1 cut(s)	562
FspBI	CTAG	1 cut(s)	782
GluI	GCNGC	1 cut(s)	562
GsuI	CTGGAG	2 cut(s)	330, 621
HaeIII	GGCC	4 cut(s)	5, 232, 412, 714
HapII	CCGG	2 cut(s)	206, 229
HgaI	GACGC	1 cut(s)	121
Hin1I	GRCGYC	1 cut(s)	113
Hin1II	CATG	3 cut(s)	54, 586, 816
HincII	GTYRAC	1 cut(s)	696
HindII	GTYRAC	1 cut(s)	696
HinfI	GANTC	5 cut(s)	101, 225, 340, 374, 617
HpaII	CCGG	2 cut(s)	206, 229
HphI	GGTGA	1 cut(s)	668
Hpy166II	GTNNAC	1 cut(s)	696
Hpy188I	TCNGA	7 cut(s)	15, 141, 224, 281, 330, 622, 723
Hpy188III	TCNNGA	5 cut(s)	206, 347, 362, 735, 813
Hpy8I	GTNNAC	1 cut(s)	696
HpyAV	CCTTC	2 cut(s)	325, 437
HpyCH4IV	ACGT	1 cut(s)	249
HpyCH4V	TGCA	2 cut(s)	482, 677
HpyF10VI	GCNNNNNNNGC	3 cut(s)	266, 418, 716
HpyF3I	CTNAG	1 cut(s)	108
HpySE526I	ACGT	1 cut(s)	249
Hsp92I	GRCGYC	1 cut(s)	113
Hsp92II	CATG	3 cut(s)	54, 586, 816
Kpn2I	TCCGGA	1 cut(s)	205
Kzo9I	GATC	1 cut(s)	589
LmnI	GCTCC	2 cut(s)	208, 208
MaeI	CTAG	1 cut(s)	782
MaeII	ACGT	1 cut(s)	249
MalI	GATC	1 cut(s)	591
MboI	GATC	1 cut(s)	589
MboII	GAAGA	3 cut(s)	117, 164, 268
MflI	RGATCY	1 cut(s)	589
MhlI	GDGCHC	2 cut(s)	13, 213
MlsI	TGGCCA	1 cut(s)	5
MluCI	AATT	3 cut(s)	193, 398, 474
MluNI	TGGCCA	1 cut(s)	5
MlyI	GAGTC	2 cut(s)	110, 234
MnlI	CCTC	4 cut(s)	40, 195, 354, 793
Mox20I	TGGCCA	1 cut(s)	5
MroI	TCCGGA	1 cut(s)	205
MscI	TGGCCA	1 cut(s)	5
MseI	TTAA	1 cut(s)	173
MslI	CAYNNNNRTG	1 cut(s)	49
Msp20I	TGGCCA	1 cut(s)	5
MspI	CCGG	2 cut(s)	206, 229
MwoI	GCNNNNNNNGC	3 cut(s)	266, 418, 716
NdeI	CATATG	1 cut(s)	796
NdeII	GATC	1 cut(s)	589
NlaIII	CATG	3 cut(s)	54, 586, 816
NlaIV	GGNNCC	3 cut(s)	204, 210, 591
PagI	TCATGA	1 cut(s)	812
PcsI	WCGNNNNNNNCGW	1 cut(s)	326
PfeI	GAWTC	3 cut(s)	340, 374, 617
PflMI	CCANNNNNTGG	3 cut(s)	524, 548, 599
PkrI	GCNGC	1 cut(s)	563
PleI	GAGTC	2 cut(s)	109, 233
PpsI	GAGTC	2 cut(s)	109, 233
Psp124BI	GAGCTC	1 cut(s)	13
PspN4I	GGNNCC	3 cut(s)	204, 210, 591
PspPI	GGNCC	4 cut(s)	231, 404, 490, 527
PsuI	RGATCY	1 cut(s)	589
RsaI	GTAC	3 cut(s)	486, 614, 638
RsaNI	GTAC	3 cut(s)	485, 613, 637
RseI	CAYNNNNRTG	1 cut(s)	49
SacI	GAGCTC	1 cut(s)	13
SaqAI	TTAA	1 cut(s)	173
SatI	GCNGC	1 cut(s)	562
Sau3AI	GATC	1 cut(s)	589
Sau96I	GGNCC	4 cut(s)	231, 404, 490, 527
ScaI	AGTACT	2 cut(s)	486, 638
SchI	GAGTC	2 cut(s)	110, 234
SduI	GDGCHC	2 cut(s)	13, 213
SinI	GGWCC	3 cut(s)	404, 490, 527
SmiMI	CAYNNNNRTG	1 cut(s)	49
Sse9I	AATT	3 cut(s)	193, 398, 474
SsiI	CCGC	3 cut(s)	41, 217, 561
SspMI	CTAG	1 cut(s)	782
SstI	GAGCTC	1 cut(s)	13
StyI	CCWWGG	1 cut(s)	378
TaiI	ACGT	1 cut(s)	252
TaqI	TCGA	1 cut(s)	363
TasI	AATT	3 cut(s)	193, 398, 474
TatI	WGTACW	2 cut(s)	484, 636
TauI	GCSGC	1 cut(s)	564
TfiI	GAWTC	3 cut(s)	340, 374, 617
Tru1I	TTAA	1 cut(s)	173
Tru9I	TTAA	1 cut(s)	173
TscAI	CASTG	1 cut(s)	604
TspDTI	ATGAA	1 cut(s)	39
TspGWI	ACGGA	1 cut(s)	527
TspRI	CASTG	1 cut(s)	604
Van91I	CCANNNNNTGG	3 cut(s)	524, 548, 599
VpaK11BI	GGWCC	3 cut(s)	404, 490, 527
XcmI	CCANNNNNNNNNTGG	1 cut(s)	786
XspI	CTAG	1 cut(s)	782
ZrmI	AGTACT	2 cut(s)	486, 638

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.