Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0005561.1

Orthogroup ID

OG0007313

Physical Location & Seq

Genomic Coordinates Reverse (-)

20297 .. 24967

Gene Structure 4671 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0005561.1_g000004.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1020 bp

atggccaaagctctgaacctaatacccacctcaactttcccgccattttcatgccccagaatacccacaaggagattactctctgttagagccacaacagagtcccctgagacccccacaagttcatcagcttcagttcagaccaaaccagaagaagtaaagcctgaacctttaacatttgctcctccacccaatttcaaggctccggagcccaagcggttcggagtccggcccgataagtctttggacgtgttgggtgcttctcttgccttgttcttccgattgggctgtggcgttttcgtttctgggtattcggtttcgtttgttccgaaggatgagattcctccagaccagtatgctctcgatttcaatgattccaaggtcaaggagacttcaaaattaggaccccggccagagaagcctgttgagatatatgagtttgaaggctgtccattctgccgaaaggttagggaaattgttgcagtactggaccttgatgttatattttatccgtgcccaagaaatggtccaaacttccgtccaaaggttggggagatgggcggcaaaaagcagtttccttacatggtggatccaaacactggagtttcaatgtacgaatcagatgacataatcaagtacttggttgggaagtatggtgatggaaatgttcctattgcattgtcacttggtttgttgacgactttgactgctggccttgctctgattggtcgctcaggaaagggaagtatctatactccatcaaaactaccacccaaaccactagaaatatgggcatatgagggatcccctttctgcaaacttgtacgtgaagtactcgtagagttagaactgccgcacttatatcgcagctgtgctcgtggcagccccaaacgacagatactatatcagaaagtcggacattttcaggcaccatacctggaagatcccaatactggggtgaacatgtttgaaagtgcagaaattatcgaatatctaaaagcaacttatgctcttcaatga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

GST_N_3

Protein Analysis

339

Amino Acids

37.52

Weight (kDa)

8.53

Isoelectric Point (pI)

44.18

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007313)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G03880
fragaria_vesca	FvH4_6g18820 FvH4_6g18820 FvH4_6g18820 FvH4_6g18820 FvH4_6g18820 FvH4_6g18820 FvH4_6g18820
malus_domestica	MD12G1036800.v1.1 MD14G1023500.v1.1
prunus_persica	Prupe.7G109400_v2.0.a1 Prupe.7G109400_v2.0.a1 Prupe.7G109400_v2.0.a1
pyrus_communis	pycom12g02420 pycom14g02240
rosa_chinensis	RchiOBHm_Chr3g0473831
rosa_laevigata	RLG00000023980
rosa_multiflora	Rmu_sc0005561.1_g000004
rosa_roxburghii	Rroxscaffold_6G00407740
rosa_rugosa	Rorug03G0135800
rosa_samantha	Rh3AG186300 Rh3BG214900 Rh3CG211600 Rh3DG210700
rosa_wichuraiana	Rw3G017040

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	928
AccB7I	CCANNNNNTGG	3 cut(s)	524, 548, 599
AccIII	TCCGGA	1 cut(s)	205
AciI	CCGC	4 cut(s)	41, 217, 561, 854
AclWI	GGATC	5 cut(s)	584, 597, 798, 811, 938
AcoI	YGGCCR	2 cut(s)	3, 410
AcuI	CTGAAG	1 cut(s)	117
AfaI	GTAC	5 cut(s)	486, 614, 638, 825, 834
AfiI	CCNNNNNNNGG	6 cut(s)	524, 544, 548, 599, 953, 954
AflIII	ACRYGT	2 cut(s)	249, 963
AgsI	TTSAA	7 cut(s)	199, 370, 396, 443, 609, 971, 1016
AjiI	CACGTC	1 cut(s)	250
AjnI	CCWGG	1 cut(s)	936
AluBI	AGCT	3 cut(s)	11, 131, 870
AluI	AGCT	3 cut(s)	11, 131, 870
Alw21I	GWGCWC	1 cut(s)	877
Alw26I	GTCTC	2 cut(s)	104, 383
AlwI	GGATC	5 cut(s)	584, 597, 798, 811, 938
Aor13HI	TCCGGA	1 cut(s)	205
AoxI	GGCC	4 cut(s)	3, 230, 410, 712
ApeKI	GCWGC	2 cut(s)	867, 882
AspS9I	GGNCC	4 cut(s)	231, 404, 490, 527
AsuC2I	CCSGG	1 cut(s)	409
AsuHPI	GGTGA	2 cut(s)	668, 970
AvaII	GGWCC	3 cut(s)	404, 490, 527
BaeGI	GKGCMC	1 cut(s)	518
BalI	TGGCCA	1 cut(s)	5
BamHI	GGATCC	2 cut(s)	589, 803
BanI	GGYRCC	1 cut(s)	928
BanII	GRGCYC	1 cut(s)	213
BarI	GAAGNNNNNNTAC	2 cut(s)	736, 768
BauI	CACGAG	1 cut(s)	876
Bbv12I	GWGCWC	1 cut(s)	877
BbvI	GCAGC	2 cut(s)	879, 894
BccI	CCATC	3 cut(s)	550, 653, 766
BcgI	CGANNNNNNTGC	2 cut(s)	845, 879
BciT130I	CCWGG	1 cut(s)	938
BcnI	CCSGG	1 cut(s)	409
BcoDI	GTCTC	2 cut(s)	104, 383
BfaI	CTAG	1 cut(s)	782
BisI	GCNGC	4 cut(s)	562, 854, 868, 883
BlsI	GCNGC	4 cut(s)	563, 855, 869, 884
BmcAI	AGTACT	3 cut(s)	486, 638, 834
Bme1390I	CCNGG	2 cut(s)	409, 938
Bme18I	GGWCC	3 cut(s)	404, 490, 527
BmgBI	CACGTC	1 cut(s)	250
BmgT120I	GGNCC	4 cut(s)	231, 404, 490, 527
BmiI	GGNNCC	6 cut(s)	204, 210, 406, 591, 805, 930
BmrFI	CCNGG	2 cut(s)	409, 938
BmrI	ACTGGG	1 cut(s)	963
BmuI	ACTGGG	1 cut(s)	963
BpmI	CTGGAG	2 cut(s)	330, 621
Bpu10I	CCTNAGC	1 cut(s)	733
BpuMI	CCSGG	1 cut(s)	409
BsaAI	YACGTR	1 cut(s)	827
BsaI	GGTCTC	1 cut(s)	104
BsaJI	CCNNGG	2 cut(s)	378, 407
BsaWI	WCCGGW	1 cut(s)	205
BsaXI	ACNNNNNCTCC	2 cut(s)	166, 196
Bsc4I	CCNNNNNNNGG	6 cut(s)	524, 544, 548, 599, 953, 954
Bse1I	ACTGG	4 cut(s)	352, 492, 604, 958
BseAI	TCCGGA	1 cut(s)	205
BseBI	CCWGG	1 cut(s)	938
BseDI	CCNNGG	2 cut(s)	378, 407
BseGI	GGATG	1 cut(s)	340
BseLI	CCNNNNNNNGG	6 cut(s)	524, 544, 548, 599, 953, 954
BseMII	CTCAG	2 cut(s)	99, 747
BseNI	ACTGG	4 cut(s)	352, 492, 604, 958
BseRI	GAGGAG	1 cut(s)	174
BseSI	GKGCMC	1 cut(s)	518
BseXI	GCAGC	2 cut(s)	879, 894
BsgI	GTGCAG	1 cut(s)	996
BshFI	GGCC	4 cut(s)	5, 232, 412, 714
BshNI	GGYRCC	1 cut(s)	928
BsiHKAI	GWGCWC	1 cut(s)	877
BsiSI	CCGG	3 cut(s)	206, 229, 409
BslFI	GGGAC	1 cut(s)	88
BslI	CCNNNNNNNGG	6 cut(s)	524, 544, 548, 599, 953, 954
BsmAI	GTCTC	2 cut(s)	104, 383
BsmFI	GGGAC	1 cut(s)	88
BsnI	GGCC	4 cut(s)	5, 232, 412, 714
Bso31I	GGTCTC	1 cut(s)	104
Bsp1286I	GDGCHC	3 cut(s)	213, 518, 877
Bsp13I	TCCGGA	1 cut(s)	205
Bsp143I	GATC	3 cut(s)	589, 803, 943
BspACI	CCGC	4 cut(s)	41, 217, 561, 854
BspANI	GGCC	4 cut(s)	5, 232, 412, 714
BspCNI	CTCAG	2 cut(s)	100, 746
BspEI	TCCGGA	1 cut(s)	205
BspLI	GGNNCC	6 cut(s)	204, 210, 406, 591, 805, 930
BspPI	GGATC	5 cut(s)	584, 597, 798, 811, 938
BspQI	GCTCTTC	1 cut(s)	1017
BspT107I	GGYRCC	1 cut(s)	928
BspTNI	GGTCTC	1 cut(s)	104
BsrI	ACTGG	4 cut(s)	352, 492, 604, 958
BssECI	CCNNGG	2 cut(s)	378, 407
BssMI	GATC	3 cut(s)	589, 803, 943
BssSI	CACGAG	1 cut(s)	876
BssT1I	CCWWGG	1 cut(s)	378
Bst2BI	CACGAG	1 cut(s)	876
Bst2UI	CCWGG	1 cut(s)	938
Bst6I	CTCTTC	1 cut(s)	1017
BstAPI	GCANNNNNTGC	1 cut(s)	1007
BstBAI	YACGTR	1 cut(s)	827
BstC8I	GCNNGC	1 cut(s)	712
BstDEI	CTNAG	2 cut(s)	108, 733
BstF5I	GGATG	1 cut(s)	340
BstKTI	GATC	3 cut(s)	592, 806, 946
BstMAI	GTCTC	2 cut(s)	104, 383
BstMBI	GATC	3 cut(s)	589, 803, 943
BstMWI	GCNNNNNNNGC	4 cut(s)	266, 418, 716, 1007
BstNI	CCWGG	1 cut(s)	938
BstNSI	RCATGY	1 cut(s)	967
BstSCI	CCNGG	2 cut(s)	407, 936
BstSLI	GKGCMC	1 cut(s)	518
BstV1I	GCAGC	2 cut(s)	879, 894
BstX2I	RGATCY	3 cut(s)	589, 803, 943
BstYI	RGATCY	3 cut(s)	589, 803, 943
BsuRI	GGCC	4 cut(s)	5, 232, 412, 714
BtrI	CACGTC	1 cut(s)	250
BtsCI	GGATG	1 cut(s)	340
BtsIMutI	CAGTG	1 cut(s)	597
Cac8I	GCNNGC	1 cut(s)	712
Cfr13I	GGNCC	4 cut(s)	231, 404, 490, 527
Csp6I	GTAC	5 cut(s)	485, 613, 637, 824, 833
CviAII	CATG	3 cut(s)	51, 583, 964
CviQI	GTAC	5 cut(s)	485, 613, 637, 824, 833
DdeI	CTNAG	2 cut(s)	108, 733
DpnI	GATC	3 cut(s)	591, 805, 945
DpnII	GATC	3 cut(s)	589, 803, 943
EaeI	YGGCCR	2 cut(s)	3, 410
Eam1104I	CTCTTC	1 cut(s)	1017
EarI	CTCTTC	1 cut(s)	1017
Eco130I	CCWWGG	1 cut(s)	378
Eco24I	GRGCYC	1 cut(s)	213
Eco31I	GGTCTC	1 cut(s)	104
Eco47I	GGWCC	3 cut(s)	404, 490, 527
Eco57I	CTGAAG	1 cut(s)	117
EcoO109I	RGGNCCY	1 cut(s)	404
EcoRII	CCWGG	1 cut(s)	936
EcoT14I	CCWWGG	1 cut(s)	378
EcoT38I	GRGCYC	1 cut(s)	213
ErhI	CCWWGG	1 cut(s)	378
FaeI	CATG	3 cut(s)	54, 586, 967
FaqI	GGGAC	1 cut(s)	88
FatI	CATG	3 cut(s)	50, 582, 963
FauI	CCCGC	1 cut(s)	48
FauNDI	CATATG	1 cut(s)	796
Fnu4HI	GCNGC	4 cut(s)	562, 854, 868, 883
FokI	GGATG	1 cut(s)	347
FriOI	GRGCYC	1 cut(s)	213
Fsp4HI	GCNGC	4 cut(s)	562, 854, 868, 883
FspBI	CTAG	1 cut(s)	782
GluI	GCNGC	4 cut(s)	562, 854, 868, 883
GsuI	CTGGAG	2 cut(s)	330, 621
HaeIII	GGCC	4 cut(s)	5, 232, 412, 714
HapII	CCGG	3 cut(s)	206, 229, 409
Hin1II	CATG	3 cut(s)	54, 586, 967
HincII	GTYRAC	1 cut(s)	696
HindII	GTYRAC	1 cut(s)	696
HinfI	GANTC	5 cut(s)	101, 225, 340, 374, 617
HpaII	CCGG	3 cut(s)	206, 229, 409
HphI	GGTGA	2 cut(s)	668, 970
Hpy166II	GTNNAC	2 cut(s)	696, 961
Hpy188I	TCNGA	9 cut(s)	15, 141, 224, 281, 330, 622, 723, 909, 917
Hpy188III	TCNNGA	4 cut(s)	206, 347, 362, 735
Hpy8I	GTNNAC	2 cut(s)	696, 961
HpyAV	CCTTC	2 cut(s)	325, 437
HpyCH4IV	ACGT	2 cut(s)	249, 826
HpyCH4V	TGCA	4 cut(s)	482, 677, 816, 977
HpyF10VI	GCNNNNNNNGC	4 cut(s)	266, 418, 716, 1007
HpyF3I	CTNAG	2 cut(s)	108, 733
HpySE526I	ACGT	2 cut(s)	249, 826
Hsp92II	CATG	3 cut(s)	54, 586, 967
Kpn2I	TCCGGA	1 cut(s)	205
Kzo9I	GATC	3 cut(s)	589, 803, 943
LguI	GCTCTTC	1 cut(s)	1017
LmnI	GCTCC	3 cut(s)	187, 208, 208
Lsp1109I	GCAGC	2 cut(s)	879, 894
MaeI	CTAG	1 cut(s)	782
MaeII	ACGT	2 cut(s)	249, 826
MaeIII	GTNAC	1 cut(s)	681
MalI	GATC	3 cut(s)	591, 805, 945
MboI	GATC	3 cut(s)	589, 803, 943
MboII	GAAGA	4 cut(s)	164, 268, 953, 1004
MflI	RGATCY	3 cut(s)	589, 803, 943
MhlI	GDGCHC	3 cut(s)	213, 518, 877
MlsI	TGGCCA	1 cut(s)	5
MluCI	AATT	4 cut(s)	193, 398, 474, 981
MluNI	TGGCCA	1 cut(s)	5
MlyI	GAGTC	2 cut(s)	110, 234
MmeI	TCCRAC	1 cut(s)	895
MnlI	CCTC	4 cut(s)	40, 195, 354, 793
Mox20I	TGGCCA	1 cut(s)	5
MroI	TCCGGA	1 cut(s)	205
MscI	TGGCCA	1 cut(s)	5
MseI	TTAA	1 cut(s)	173
MslI	CAYNNNNRTG	1 cut(s)	49
Msp20I	TGGCCA	1 cut(s)	5
MspA1I	CMGCKG	1 cut(s)	870
MspI	CCGG	3 cut(s)	206, 229, 409
MspR9I	CCNGG	2 cut(s)	409, 938
MvaI	CCWGG	1 cut(s)	938
MwoI	GCNNNNNNNGC	4 cut(s)	266, 418, 716, 1007
NciI	CCSGG	1 cut(s)	409
NdeI	CATATG	1 cut(s)	796
NdeII	GATC	3 cut(s)	589, 803, 943
NlaIII	CATG	3 cut(s)	54, 586, 967
NlaIV	GGNNCC	6 cut(s)	204, 210, 406, 591, 805, 930
NmuCI	GTSAC	1 cut(s)	681
NspI	RCATGY	1 cut(s)	967
PciI	ACATGT	1 cut(s)	963
PciSI	GCTCTTC	1 cut(s)	1017
PcsI	WCGNNNNNNNCGW	1 cut(s)	326
PfeI	GAWTC	3 cut(s)	340, 374, 617
PflMI	CCANNNNNTGG	3 cut(s)	524, 548, 599
PkrI	GCNGC	4 cut(s)	563, 855, 869, 884
PleI	GAGTC	2 cut(s)	109, 233
PpsI	GAGTC	2 cut(s)	109, 233
Ppu21I	YACGTR	1 cut(s)	827
PpuMI	RGGWCCY	1 cut(s)	404
PscI	ACATGT	1 cut(s)	963
Psp5II	RGGWCCY	1 cut(s)	404
Psp6I	CCWGG	1 cut(s)	936
PspGI	CCWGG	1 cut(s)	936
PspN4I	GGNNCC	6 cut(s)	204, 210, 406, 591, 805, 930
PspPI	GGNCC	4 cut(s)	231, 404, 490, 527
PspPPI	RGGWCCY	1 cut(s)	404
PsuI	RGATCY	3 cut(s)	589, 803, 943
PvuII	CAGCTG	1 cut(s)	870
RsaI	GTAC	5 cut(s)	486, 614, 638, 825, 834
RsaNI	GTAC	5 cut(s)	485, 613, 637, 824, 833
RseI	CAYNNNNRTG	1 cut(s)	49
SapI	GCTCTTC	1 cut(s)	1017
SaqAI	TTAA	1 cut(s)	173
SatI	GCNGC	4 cut(s)	562, 854, 868, 883
Sau3AI	GATC	3 cut(s)	589, 803, 943
Sau96I	GGNCC	4 cut(s)	231, 404, 490, 527
ScaI	AGTACT	3 cut(s)	486, 638, 834
SchI	GAGTC	2 cut(s)	110, 234
ScrFI	CCNGG	2 cut(s)	409, 938
SduI	GDGCHC	3 cut(s)	213, 518, 877
SinI	GGWCC	3 cut(s)	404, 490, 527
SmiMI	CAYNNNNRTG	1 cut(s)	49
Sse9I	AATT	4 cut(s)	193, 398, 474, 981
SsiI	CCGC	4 cut(s)	41, 217, 561, 854
SspMI	CTAG	1 cut(s)	782
StyD4I	CCNGG	2 cut(s)	407, 936
StyI	CCWWGG	1 cut(s)	378
TaiI	ACGT	2 cut(s)	252, 829
TaqI	TCGA	2 cut(s)	363, 987
TasI	AATT	4 cut(s)	193, 398, 474, 981
TatI	WGTACW	3 cut(s)	484, 636, 832
TauI	GCSGC	2 cut(s)	564, 856
TfiI	GAWTC	3 cut(s)	340, 374, 617
Tru1I	TTAA	1 cut(s)	173
Tru9I	TTAA	1 cut(s)	173
TscAI	CASTG	1 cut(s)	604
TseFI	GTSAC	1 cut(s)	681
TseI	GCWGC	2 cut(s)	867, 882
Tsp45I	GTSAC	1 cut(s)	681
TspDTI	ATGAA	2 cut(s)	39, 114
TspGWI	ACGGA	2 cut(s)	501, 527
TspRI	CASTG	1 cut(s)	604
Van91I	CCANNNNNTGG	3 cut(s)	524, 548, 599
VpaK11BI	GGWCC	3 cut(s)	404, 490, 527
XceI	RCATGY	1 cut(s)	967
XcmI	CCANNNNNNNNNTGG	1 cut(s)	786
XspI	CTAG	1 cut(s)	782
ZrmI	AGTACT	3 cut(s)	486, 638, 834

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.