Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr3C

Orthogroup ID

OG0007313

Physical Location & Seq

Genomic Coordinates Forward (+)

19322696 .. 19329043

Gene Structure 6348 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh3CG211600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 990 bp

ATGGCCAGAGCTCTGAACCTAATACCCACCTCAACTTTCCCGCCATTTTCATGCCCCAGAATACCCACAAGGAGATTACTCTCTGTTAGAGCCACAACAGAGTCCCCTGAGACGCCCACAAGTTCTTCAGCTTCAGTTCAGACCAAACCCGAAGAAGTAAAGCCTGAACCTTTAACATTTTCTCCTCCACCCAATTTCAAGGCTCCGGAGCCCAAGCGGTTCGGAGTCCGGCCCGATAAGTCTTTGGACGTGTTGGGTGCTTCTCTTGCCTTGTTCTTCCGATTGGGCTGTGGCGTTTTCGTTTCTGGGTATTCGGTTTCGTTTGTTCCGAAGGATGAGATTCCTCCAGACCAGTATGCTCTCGATTTCAATGATTCCAAGGTCAAGGAGACTTCAAAATTAGGACCACGGCCAGATAAGCCTGTTGAGATATATGAGTTTGAAGGCTGTCCATTCTGCCGAAAGGTTAGGGAAATTGTTGCAGTACTGGACCTTGATGTTATATTTTATCCCTGCCCAAGAAATGGTCCAAACTTCCGTCCAAAGGTTGGGGAGATGGGCGGCAAAAAGCAGTTTCCTTACATGGTGGATCCAAACACTGGAGTTTCAATGTACGAATCAGATGACATAATCAAGTACTTGGTTGGGAAGTATGGTGATGGAAATGTTCCTATTGCATTGTCTCTTGGTTTGTTGACGACTTTGACTGCTGGCCTTGCTCTGATTGGTCGCTCGGGAAAGGTTAGATTTTTGAATTGCTTTAAGTATGCCAATTGTTTTCAAAATTTATCTTCTTTGCAGGTTGATCTCCAAAATTACTTCTTGTATTTAGTTTATCCTCACGGAATGCACATGCTAGATTATAAAGTTTTTGCTATTATATGCAAAATAAACTTCACTGACCAGTCCCCTGTATTCTATTTCTATTCAGGGAAGTATCTATACTCCATCAAAACTACCACCCAAACCACTAGAAATATGGGCATATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

GST_N_3

Protein Analysis

329

Amino Acids

36.8

Weight (kDa)

8.95

Isoelectric Point (pI)

40.14

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
GST_N_3	PF13417	145 - 219	1.5e-15	Glutathione S-transferase, N-terminal domain
GST_N_2	PF13409	150 - 214	1.3e-07	Glutathione S-transferase, N-terminal domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007313)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G03880
fragaria_vesca	FvH4_6g18820 FvH4_6g18820 FvH4_6g18820 FvH4_6g18820 FvH4_6g18820 FvH4_6g18820 FvH4_6g18820
malus_domestica	MD12G1036800.v1.1 MD14G1023500.v1.1
prunus_persica	Prupe.7G109400_v2.0.a1 Prupe.7G109400_v2.0.a1 Prupe.7G109400_v2.0.a1
pyrus_communis	pycom12g02420 pycom14g02240
rosa_chinensis	RchiOBHm_Chr3g0473831
rosa_laevigata	RLG00000023980
rosa_multiflora	Rmu_sc0005561.1_g000004
rosa_roxburghii	Rroxscaffold_6G00407740
rosa_rugosa	Rorug03G0135800
rosa_samantha	Rh3AG186300 Rh3BG214900 Rh3CG211600 Rh3DG210700
rosa_wichuraiana	Rw3G017040

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	864
Acc36I	ACCTGC	1 cut(s)	790
AccB7I	CCANNNNNTGG	3 cut(s)	524, 548, 599
AccIII	TCCGGA	1 cut(s)	205
AciI	CCGC	3 cut(s)	41, 217, 561
AclWI	GGATC	2 cut(s)	584, 597
AcoI	YGGCCR	2 cut(s)	3, 410
AcsI	RAATTY	1 cut(s)	784
AcuI	CTGAAG	2 cut(s)	111, 117
AcyI	GRCGYC	1 cut(s)	113
AfaI	GTAC	3 cut(s)	486, 614, 638
AfiI	CCNNNNNNNGG	4 cut(s)	524, 544, 548, 599
AflIII	ACRYGT	1 cut(s)	249
AgsI	TTSAA	7 cut(s)	199, 370, 396, 443, 609, 754, 782
AjiI	CACGTC	1 cut(s)	250
AluBI	AGCT	2 cut(s)	11, 131
AluI	AGCT	2 cut(s)	11, 131
Alw21I	GWGCWC	1 cut(s)	13
Alw26I	GTCTC	3 cut(s)	104, 383, 687
AlwI	GGATC	2 cut(s)	584, 597
Ama87I	CYCGRG	1 cut(s)	733
Aor13HI	TCCGGA	1 cut(s)	205
AoxI	GGCC	4 cut(s)	3, 230, 410, 712
ApoI	RAATTY	1 cut(s)	784
AspS9I	GGNCC	4 cut(s)	231, 404, 490, 527
AsuHPI	GGTGA	1 cut(s)	668
AvaI	CYCGRG	1 cut(s)	733
AvaII	GGWCC	3 cut(s)	404, 490, 527
BalI	TGGCCA	1 cut(s)	5
BamHI	GGATCC	1 cut(s)	589
BanII	GRGCYC	2 cut(s)	13, 213
BarI	GAAGNNNNNNTAC	2 cut(s)	926, 958
Bbv12I	GWGCWC	1 cut(s)	13
BccI	CCATC	3 cut(s)	550, 653, 956
BceAI	ACGGC	1 cut(s)	425
BcoDI	GTCTC	3 cut(s)	104, 383, 687
BfaI	CTAG	2 cut(s)	857, 972
BfuAI	ACCTGC	1 cut(s)	790
BisI	GCNGC	1 cut(s)	562
BlsI	GCNGC	1 cut(s)	563
BmcAI	AGTACT	2 cut(s)	486, 638
Bme18I	GGWCC	3 cut(s)	404, 490, 527
BmeT110I	CYCGRG	1 cut(s)	733
BmgBI	CACGTC	1 cut(s)	250
BmgT120I	GGNCC	4 cut(s)	231, 404, 490, 527
BmiI	GGNNCC	3 cut(s)	204, 210, 591
BpmI	CTGGAG	2 cut(s)	330, 621
BsaHI	GRCGYC	1 cut(s)	113
BsaJI	CCNNGG	2 cut(s)	378, 407
BsaWI	WCCGGW	1 cut(s)	205
BsaXI	ACNNNNNCTCC	2 cut(s)	166, 196
Bsc4I	CCNNNNNNNGG	4 cut(s)	524, 544, 548, 599
Bse1I	ACTGG	4 cut(s)	352, 492, 604, 904
BseAI	TCCGGA	1 cut(s)	205
BseDI	CCNNGG	2 cut(s)	378, 407
BseGI	GGATG	1 cut(s)	340
BseLI	CCNNNNNNNGG	4 cut(s)	524, 544, 548, 599
BseMII	CTCAG	1 cut(s)	99
BseNI	ACTGG	4 cut(s)	352, 492, 604, 904
BseRI	GAGGAG	1 cut(s)	174
BshFI	GGCC	4 cut(s)	5, 232, 412, 714
BsiHKAI	GWGCWC	1 cut(s)	13
BsiHKCI	CYCGRG	1 cut(s)	733
BsiSI	CCGG	2 cut(s)	206, 229
BslFI	GGGAC	2 cut(s)	88, 892
BslI	CCNNNNNNNGG	4 cut(s)	524, 544, 548, 599
BsmAI	GTCTC	3 cut(s)	104, 383, 687
BsmBI	CGTCTC	1 cut(s)	104
BsmFI	GGGAC	2 cut(s)	88, 892
BsmI	GAATGC	1 cut(s)	852
BsnI	GGCC	4 cut(s)	5, 232, 412, 714
BsoBI	CYCGRG	1 cut(s)	733
Bsp1286I	GDGCHC	2 cut(s)	13, 213
Bsp13I	TCCGGA	1 cut(s)	205
Bsp143I	GATC	2 cut(s)	589, 805
BspACI	CCGC	3 cut(s)	41, 217, 561
BspANI	GGCC	4 cut(s)	5, 232, 412, 714
BspCNI	CTCAG	1 cut(s)	100
BspEI	TCCGGA	1 cut(s)	205
BspLI	GGNNCC	3 cut(s)	204, 210, 591
BspMI	ACCTGC	1 cut(s)	790
BspPI	GGATC	2 cut(s)	584, 597
BsrI	ACTGG	4 cut(s)	352, 492, 604, 904
BssECI	CCNNGG	2 cut(s)	378, 407
BssMI	GATC	2 cut(s)	589, 805
BssNI	GRCGYC	1 cut(s)	113
BssT1I	CCWWGG	1 cut(s)	378
BstACI	GRCGYC	1 cut(s)	113
BstC8I	GCNNGC	1 cut(s)	712
BstDEI	CTNAG	1 cut(s)	108
BstDSI	CCRYGG	1 cut(s)	407
BstF5I	GGATG	1 cut(s)	340
BstKTI	GATC	2 cut(s)	592, 808
BstMAI	GTCTC	3 cut(s)	104, 383, 687
BstMBI	GATC	2 cut(s)	589, 805
BstMWI	GCNNNNNNNGC	3 cut(s)	266, 418, 716
BstNSI	RCATGY	1 cut(s)	856
BstX2I	RGATCY	1 cut(s)	589
BstYI	RGATCY	1 cut(s)	589
BsuRI	GGCC	4 cut(s)	5, 232, 412, 714
BtgI	CCRYGG	1 cut(s)	407
BtrI	CACGTC	1 cut(s)	250
BtsCI	GGATG	1 cut(s)	340
BtsIMutI	CAGTG	2 cut(s)	597, 897
BveI	ACCTGC	1 cut(s)	790
Cac8I	GCNNGC	1 cut(s)	712
Cfr13I	GGNCC	4 cut(s)	231, 404, 490, 527
CseI	GACGC	1 cut(s)	121
Csp6I	GTAC	3 cut(s)	485, 613, 637
CviAII	CATG	3 cut(s)	51, 583, 853
CviQI	GTAC	3 cut(s)	485, 613, 637
DdeI	CTNAG	1 cut(s)	108
DpnI	GATC	2 cut(s)	591, 807
DpnII	GATC	2 cut(s)	589, 805
EaeI	YGGCCR	2 cut(s)	3, 410
Ecl136II	GAGCTC	1 cut(s)	11
Eco130I	CCWWGG	1 cut(s)	378
Eco24I	GRGCYC	2 cut(s)	13, 213
Eco47I	GGWCC	3 cut(s)	404, 490, 527
Eco53kI	GAGCTC	1 cut(s)	11
Eco57I	CTGAAG	2 cut(s)	111, 117
Eco88I	CYCGRG	1 cut(s)	733
EcoICRI	GAGCTC	1 cut(s)	11
EcoT14I	CCWWGG	1 cut(s)	378
EcoT38I	GRGCYC	2 cut(s)	13, 213
ErhI	CCWWGG	1 cut(s)	378
Esp3I	CGTCTC	1 cut(s)	104
FaeI	CATG	3 cut(s)	54, 586, 856
FaqI	GGGAC	2 cut(s)	88, 892
FatI	CATG	3 cut(s)	50, 582, 852
FauI	CCCGC	1 cut(s)	48
FauNDI	CATATG	1 cut(s)	986
Fnu4HI	GCNGC	1 cut(s)	562
FokI	GGATG	1 cut(s)	347
FriOI	GRGCYC	2 cut(s)	13, 213
Fsp4HI	GCNGC	1 cut(s)	562
FspBI	CTAG	2 cut(s)	857, 972
GluI	GCNGC	1 cut(s)	562
GsuI	CTGGAG	2 cut(s)	330, 621
HaeIII	GGCC	4 cut(s)	5, 232, 412, 714
HapII	CCGG	2 cut(s)	206, 229
HgaI	GACGC	1 cut(s)	121
Hin1I	GRCGYC	1 cut(s)	113
Hin1II	CATG	3 cut(s)	54, 586, 856
HincII	GTYRAC	1 cut(s)	696
HindII	GTYRAC	1 cut(s)	696
HinfI	GANTC	5 cut(s)	101, 225, 340, 374, 617
HpaII	CCGG	2 cut(s)	206, 229
HphI	GGTGA	1 cut(s)	668
Hpy166II	GTNNAC	1 cut(s)	696
Hpy188I	TCNGA	7 cut(s)	15, 141, 224, 281, 330, 622, 723
Hpy188III	TCNNGA	4 cut(s)	206, 347, 362, 735
Hpy8I	GTNNAC	1 cut(s)	696
HpyAV	CCTTC	2 cut(s)	325, 437
HpyCH4IV	ACGT	1 cut(s)	249
HpyCH4V	TGCA	5 cut(s)	482, 677, 799, 850, 885
HpyF10VI	GCNNNNNNNGC	3 cut(s)	266, 418, 716
HpyF3I	CTNAG	1 cut(s)	108
HpySE526I	ACGT	1 cut(s)	249
Hsp92I	GRCGYC	1 cut(s)	113
Hsp92II	CATG	3 cut(s)	54, 586, 856
Kpn2I	TCCGGA	1 cut(s)	205
Kzo9I	GATC	2 cut(s)	589, 805
LmnI	GCTCC	2 cut(s)	208, 208
MaeI	CTAG	2 cut(s)	857, 972
MaeII	ACGT	1 cut(s)	249
MalI	GATC	2 cut(s)	591, 807
MboI	GATC	2 cut(s)	589, 805
MboII	GAAGA	4 cut(s)	117, 164, 268, 783
MfeI	CAATTG	1 cut(s)	772
MflI	RGATCY	1 cut(s)	589
MhlI	GDGCHC	2 cut(s)	13, 213
MlsI	TGGCCA	1 cut(s)	5
MluCI	AATT	7 cut(s)	193, 398, 474, 754, 772, 784, 814
MluNI	TGGCCA	1 cut(s)	5
MlyI	GAGTC	2 cut(s)	110, 234
MnlI	CCTC	4 cut(s)	40, 195, 354, 849
Mox20I	TGGCCA	1 cut(s)	5
MroI	TCCGGA	1 cut(s)	205
MscI	TGGCCA	1 cut(s)	5
MseI	TTAA	2 cut(s)	173, 762
MslI	CAYNNNNRTG	1 cut(s)	49
Msp20I	TGGCCA	1 cut(s)	5
MspI	CCGG	2 cut(s)	206, 229
MunI	CAATTG	1 cut(s)	772
Mva1269I	GAATGC	1 cut(s)	852
MwoI	GCNNNNNNNGC	3 cut(s)	266, 418, 716
NdeI	CATATG	1 cut(s)	986
NdeII	GATC	2 cut(s)	589, 805
NlaIII	CATG	3 cut(s)	54, 586, 856
NlaIV	GGNNCC	3 cut(s)	204, 210, 591
NspI	RCATGY	1 cut(s)	856
PcsI	WCGNNNNNNNCGW	1 cut(s)	326
PctI	GAATGC	1 cut(s)	852
PfeI	GAWTC	3 cut(s)	340, 374, 617
PflMI	CCANNNNNTGG	3 cut(s)	524, 548, 599
PkrI	GCNGC	1 cut(s)	563
PleI	GAGTC	2 cut(s)	109, 233
PpsI	GAGTC	2 cut(s)	109, 233
PsiI	TTATAA	1 cut(s)	864
Psp124BI	GAGCTC	1 cut(s)	13
PspN4I	GGNNCC	3 cut(s)	204, 210, 591
PspPI	GGNCC	4 cut(s)	231, 404, 490, 527
PsuI	RGATCY	1 cut(s)	589
RsaI	GTAC	3 cut(s)	486, 614, 638
RsaNI	GTAC	3 cut(s)	485, 613, 637
RseI	CAYNNNNRTG	1 cut(s)	49
SacI	GAGCTC	1 cut(s)	13
SaqAI	TTAA	2 cut(s)	173, 762
SatI	GCNGC	1 cut(s)	562
Sau3AI	GATC	2 cut(s)	589, 805
Sau96I	GGNCC	4 cut(s)	231, 404, 490, 527
ScaI	AGTACT	2 cut(s)	486, 638
SchI	GAGTC	2 cut(s)	110, 234
SduI	GDGCHC	2 cut(s)	13, 213
SinI	GGWCC	3 cut(s)	404, 490, 527
SmiMI	CAYNNNNRTG	1 cut(s)	49
Sse9I	AATT	7 cut(s)	193, 398, 474, 754, 772, 784, 814
SsiI	CCGC	3 cut(s)	41, 217, 561
SspMI	CTAG	2 cut(s)	857, 972
SstI	GAGCTC	1 cut(s)	13
StyI	CCWWGG	1 cut(s)	378
TaiI	ACGT	1 cut(s)	252
TaqI	TCGA	1 cut(s)	363
TasI	AATT	7 cut(s)	193, 398, 474, 754, 772, 784, 814
TatI	WGTACW	2 cut(s)	484, 636
TauI	GCSGC	1 cut(s)	564
TfiI	GAWTC	3 cut(s)	340, 374, 617
Tru1I	TTAA	2 cut(s)	173, 762
Tru9I	TTAA	2 cut(s)	173, 762
TscAI	CASTG	2 cut(s)	604, 904
TspDTI	ATGAA	1 cut(s)	39
TspGWI	ACGGA	2 cut(s)	527, 858
TspRI	CASTG	2 cut(s)	604, 904
Van91I	CCANNNNNTGG	3 cut(s)	524, 548, 599
VpaK11BI	GGWCC	3 cut(s)	404, 490, 527
XapI	RAATTY	1 cut(s)	784
XceI	RCATGY	1 cut(s)	856
XcmI	CCANNNNNNNNNTGG	1 cut(s)	976
XspI	CTAG	2 cut(s)	857, 972
ZrmI	AGTACT	2 cut(s)	486, 638

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.