Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr3

Orthogroup ID

OG0007313

Physical Location & Seq

Genomic Coordinates Forward (+)

18372730 .. 18377849

Gene Structure 5120 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw3G017040.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1020 bp

ATGGCCAAAGCTCTGAACCTAATACCCACCTCAACTTTCCCGCCATTTTCATGCCCCAGAATACCCACAAGGAGATTACTCTCTGTTAGAGCCACAACAGAGTCCCCTGAGACCCCCACAAGTTCATCAGCTTCAGTTCAGACCAAACCAGAAGAAGTAAAGCCTGAACCTTTAACATTTGCTCCTCCACCCAATTTCAAGGCTCCGGAGCCCAAGCGGTTCGGAGTCCGGCCCGATAAGTCTTTGGACGTGTTGGGTGCTTCTCTTGCCCTGTTCTTCCGATTGGGCTGTGGCGTTTTCGTTTCTGGGTATTCGGTTTCGTTTGTTCCGAAGGATGAGATTCCTCCAGACCAGTATGCTCTCGATTTCAATGATTCCAAGGTCAAGGAGACTTCAAAATTAGGACCCCGGCCAGAGAAGCCTGTTGAGATATATGAGTTTGAAGGCTGTCCATTCTGCCGAAAGGTTAGGGAAATTGTTGCAGTACTGGACCTTGATGTTATATTTTATCCGTGCCCAAGAAATGGTCCAAACTTCCGTCCAAAGGTTGGGGAGATGGGCGGCAAAAAGCAGTTTCCTTACATGGTGGATCCAAACACTGGAGTTTCAATGTACGAATCAGATGACATAATCAAGTACTTGGTTGGGAAGTATGGTGATGGAAATGTTCCTATTGCATTGTCACTTGGTTTGTTGACGACTTTGACTGCTGGCCTTGCTCTGATTGGTCGCTCGGGAAAGGGAAGTATCTATACTCCATCAAAACTACCACCCAAACCACTAGAAATATGGGCATATGAGGGATCCCCTTTCTGCAAACTTGTACGTGAAGTACTCGTAGAGTTAGAACTGCCGCACTTATATCGCAGCTGTGCTCGTGGCAGCCCCAAACGACAGATACTATATCAGAAAGTCGGACATTTTCAGGCACCATACCTGGAAGATCCCAATACTGGGGTGAACATGTTTGAAAGTGCAGAAATTATCGAATATCTAAAAGCAACTTATGCTCTTCAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

GST_N_3

Protein Analysis

339

Amino Acids

37.52

Weight (kDa)

8.53

Isoelectric Point (pI)

44.18

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
GST_N_3	PF13417	145 - 219	1.6e-15	Glutathione S-transferase, N-terminal domain
GST_N_2	PF13409	150 - 214	1.4e-07	Glutathione S-transferase, N-terminal domain
GST_N_3	PF13417	266 - 337	7.9e-12	Glutathione S-transferase, N-terminal domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007313)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G03880
fragaria_vesca	FvH4_6g18820 FvH4_6g18820 FvH4_6g18820 FvH4_6g18820 FvH4_6g18820 FvH4_6g18820 FvH4_6g18820
malus_domestica	MD12G1036800.v1.1 MD14G1023500.v1.1
prunus_persica	Prupe.7G109400_v2.0.a1 Prupe.7G109400_v2.0.a1 Prupe.7G109400_v2.0.a1
pyrus_communis	pycom12g02420 pycom14g02240
rosa_chinensis	RchiOBHm_Chr3g0473831
rosa_laevigata	RLG00000023980
rosa_multiflora	Rmu_sc0005561.1_g000004
rosa_roxburghii	Rroxscaffold_6G00407740
rosa_rugosa	Rorug03G0135800
rosa_samantha	Rh3AG186300 Rh3BG214900 Rh3CG211600 Rh3DG210700
rosa_wichuraiana	Rw3G017040

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	928
AccB7I	CCANNNNNTGG	3 cut(s)	524, 548, 599
AccIII	TCCGGA	1 cut(s)	205
AciI	CCGC	4 cut(s)	41, 217, 561, 854
AclWI	GGATC	5 cut(s)	584, 597, 798, 811, 938
AcoI	YGGCCR	2 cut(s)	3, 410
AcuI	CTGAAG	1 cut(s)	117
AfaI	GTAC	5 cut(s)	486, 614, 638, 825, 834
AfiI	CCNNNNNNNGG	6 cut(s)	524, 544, 548, 599, 953, 954
AflIII	ACRYGT	2 cut(s)	249, 963
AgsI	TTSAA	7 cut(s)	199, 370, 396, 443, 609, 971, 1016
AjiI	CACGTC	1 cut(s)	250
AjnI	CCWGG	1 cut(s)	936
AluBI	AGCT	3 cut(s)	11, 131, 870
AluI	AGCT	3 cut(s)	11, 131, 870
Alw21I	GWGCWC	1 cut(s)	877
Alw26I	GTCTC	2 cut(s)	104, 383
AlwI	GGATC	5 cut(s)	584, 597, 798, 811, 938
Ama87I	CYCGRG	1 cut(s)	733
Aor13HI	TCCGGA	1 cut(s)	205
AoxI	GGCC	4 cut(s)	3, 230, 410, 712
ApeKI	GCWGC	2 cut(s)	867, 882
AspS9I	GGNCC	4 cut(s)	231, 404, 490, 527
AsuC2I	CCSGG	1 cut(s)	409
AsuHPI	GGTGA	2 cut(s)	668, 970
AvaI	CYCGRG	1 cut(s)	733
AvaII	GGWCC	3 cut(s)	404, 490, 527
BaeGI	GKGCMC	1 cut(s)	518
BalI	TGGCCA	1 cut(s)	5
BamHI	GGATCC	2 cut(s)	589, 803
BanI	GGYRCC	1 cut(s)	928
BanII	GRGCYC	1 cut(s)	213
BarI	GAAGNNNNNNTAC	2 cut(s)	736, 768
BauI	CACGAG	1 cut(s)	876
Bbv12I	GWGCWC	1 cut(s)	877
BbvI	GCAGC	2 cut(s)	879, 894
BccI	CCATC	3 cut(s)	550, 653, 766
BcgI	CGANNNNNNTGC	2 cut(s)	845, 879
BciT130I	CCWGG	1 cut(s)	938
BcnI	CCSGG	1 cut(s)	409
BcoDI	GTCTC	2 cut(s)	104, 383
BfaI	CTAG	1 cut(s)	782
BisI	GCNGC	4 cut(s)	562, 854, 868, 883
BlsI	GCNGC	4 cut(s)	563, 855, 869, 884
BmcAI	AGTACT	3 cut(s)	486, 638, 834
Bme1390I	CCNGG	2 cut(s)	409, 938
Bme18I	GGWCC	3 cut(s)	404, 490, 527
BmeT110I	CYCGRG	1 cut(s)	733
BmgBI	CACGTC	1 cut(s)	250
BmgT120I	GGNCC	4 cut(s)	231, 404, 490, 527
BmiI	GGNNCC	6 cut(s)	204, 210, 406, 591, 805, 930
BmrFI	CCNGG	2 cut(s)	409, 938
BmrI	ACTGGG	1 cut(s)	963
BmuI	ACTGGG	1 cut(s)	963
BpmI	CTGGAG	2 cut(s)	330, 621
BpuMI	CCSGG	1 cut(s)	409
BsaAI	YACGTR	1 cut(s)	827
BsaI	GGTCTC	1 cut(s)	104
BsaJI	CCNNGG	2 cut(s)	378, 407
BsaWI	WCCGGW	1 cut(s)	205
BsaXI	ACNNNNNCTCC	2 cut(s)	166, 196
Bsc4I	CCNNNNNNNGG	6 cut(s)	524, 544, 548, 599, 953, 954
Bse1I	ACTGG	4 cut(s)	352, 492, 604, 958
BseAI	TCCGGA	1 cut(s)	205
BseBI	CCWGG	1 cut(s)	938
BseDI	CCNNGG	2 cut(s)	378, 407
BseGI	GGATG	1 cut(s)	340
BseLI	CCNNNNNNNGG	6 cut(s)	524, 544, 548, 599, 953, 954
BseMII	CTCAG	1 cut(s)	99
BseNI	ACTGG	4 cut(s)	352, 492, 604, 958
BseRI	GAGGAG	1 cut(s)	174
BseSI	GKGCMC	1 cut(s)	518
BseXI	GCAGC	2 cut(s)	879, 894
BsgI	GTGCAG	1 cut(s)	996
BshFI	GGCC	4 cut(s)	5, 232, 412, 714
BshNI	GGYRCC	1 cut(s)	928
BsiHKAI	GWGCWC	1 cut(s)	877
BsiHKCI	CYCGRG	1 cut(s)	733
BsiSI	CCGG	3 cut(s)	206, 229, 409
BslFI	GGGAC	1 cut(s)	88
BslI	CCNNNNNNNGG	6 cut(s)	524, 544, 548, 599, 953, 954
BsmAI	GTCTC	2 cut(s)	104, 383
BsmFI	GGGAC	1 cut(s)	88
BsnI	GGCC	4 cut(s)	5, 232, 412, 714
Bso31I	GGTCTC	1 cut(s)	104
BsoBI	CYCGRG	1 cut(s)	733
Bsp1286I	GDGCHC	3 cut(s)	213, 518, 877
Bsp13I	TCCGGA	1 cut(s)	205
Bsp143I	GATC	3 cut(s)	589, 803, 943
BspACI	CCGC	4 cut(s)	41, 217, 561, 854
BspANI	GGCC	4 cut(s)	5, 232, 412, 714
BspCNI	CTCAG	1 cut(s)	100
BspEI	TCCGGA	1 cut(s)	205
BspLI	GGNNCC	6 cut(s)	204, 210, 406, 591, 805, 930
BspPI	GGATC	5 cut(s)	584, 597, 798, 811, 938
BspQI	GCTCTTC	1 cut(s)	1017
BspT107I	GGYRCC	1 cut(s)	928
BspTNI	GGTCTC	1 cut(s)	104
BsrI	ACTGG	4 cut(s)	352, 492, 604, 958
BssECI	CCNNGG	2 cut(s)	378, 407
BssMI	GATC	3 cut(s)	589, 803, 943
BssSI	CACGAG	1 cut(s)	876
BssT1I	CCWWGG	1 cut(s)	378
Bst2BI	CACGAG	1 cut(s)	876
Bst2UI	CCWGG	1 cut(s)	938
Bst6I	CTCTTC	1 cut(s)	1017
BstAPI	GCANNNNNTGC	1 cut(s)	1007
BstBAI	YACGTR	1 cut(s)	827
BstC8I	GCNNGC	1 cut(s)	712
BstDEI	CTNAG	1 cut(s)	108
BstF5I	GGATG	1 cut(s)	340
BstKTI	GATC	3 cut(s)	592, 806, 946
BstMAI	GTCTC	2 cut(s)	104, 383
BstMBI	GATC	3 cut(s)	589, 803, 943
BstMWI	GCNNNNNNNGC	4 cut(s)	266, 418, 716, 1007
BstNI	CCWGG	1 cut(s)	938
BstNSI	RCATGY	1 cut(s)	967
BstSCI	CCNGG	2 cut(s)	407, 936
BstSLI	GKGCMC	1 cut(s)	518
BstV1I	GCAGC	2 cut(s)	879, 894
BstX2I	RGATCY	3 cut(s)	589, 803, 943
BstYI	RGATCY	3 cut(s)	589, 803, 943
BsuRI	GGCC	4 cut(s)	5, 232, 412, 714
BtrI	CACGTC	1 cut(s)	250
BtsCI	GGATG	1 cut(s)	340
BtsIMutI	CAGTG	1 cut(s)	597
Cac8I	GCNNGC	1 cut(s)	712
Cfr13I	GGNCC	4 cut(s)	231, 404, 490, 527
Csp6I	GTAC	5 cut(s)	485, 613, 637, 824, 833
CviAII	CATG	3 cut(s)	51, 583, 964
CviQI	GTAC	5 cut(s)	485, 613, 637, 824, 833
DdeI	CTNAG	1 cut(s)	108
DpnI	GATC	3 cut(s)	591, 805, 945
DpnII	GATC	3 cut(s)	589, 803, 943
EaeI	YGGCCR	2 cut(s)	3, 410
Eam1104I	CTCTTC	1 cut(s)	1017
EarI	CTCTTC	1 cut(s)	1017
Eco130I	CCWWGG	1 cut(s)	378
Eco24I	GRGCYC	1 cut(s)	213
Eco31I	GGTCTC	1 cut(s)	104
Eco47I	GGWCC	3 cut(s)	404, 490, 527
Eco57I	CTGAAG	1 cut(s)	117
Eco88I	CYCGRG	1 cut(s)	733
EcoO109I	RGGNCCY	1 cut(s)	404
EcoRII	CCWGG	1 cut(s)	936
EcoT14I	CCWWGG	1 cut(s)	378
EcoT38I	GRGCYC	1 cut(s)	213
ErhI	CCWWGG	1 cut(s)	378
FaeI	CATG	3 cut(s)	54, 586, 967
FaqI	GGGAC	1 cut(s)	88
FatI	CATG	3 cut(s)	50, 582, 963
FauI	CCCGC	1 cut(s)	48
FauNDI	CATATG	1 cut(s)	796
Fnu4HI	GCNGC	4 cut(s)	562, 854, 868, 883
FokI	GGATG	1 cut(s)	347
FriOI	GRGCYC	1 cut(s)	213
Fsp4HI	GCNGC	4 cut(s)	562, 854, 868, 883
FspBI	CTAG	1 cut(s)	782
GluI	GCNGC	4 cut(s)	562, 854, 868, 883
GsuI	CTGGAG	2 cut(s)	330, 621
HaeIII	GGCC	4 cut(s)	5, 232, 412, 714
HapII	CCGG	3 cut(s)	206, 229, 409
Hin1II	CATG	3 cut(s)	54, 586, 967
HincII	GTYRAC	1 cut(s)	696
HindII	GTYRAC	1 cut(s)	696
HinfI	GANTC	5 cut(s)	101, 225, 340, 374, 617
HpaII	CCGG	3 cut(s)	206, 229, 409
HphI	GGTGA	2 cut(s)	668, 970
Hpy166II	GTNNAC	2 cut(s)	696, 961
Hpy188I	TCNGA	9 cut(s)	15, 141, 224, 281, 330, 622, 723, 909, 917
Hpy188III	TCNNGA	4 cut(s)	206, 347, 362, 735
Hpy8I	GTNNAC	2 cut(s)	696, 961
HpyAV	CCTTC	2 cut(s)	325, 437
HpyCH4IV	ACGT	2 cut(s)	249, 826
HpyCH4V	TGCA	4 cut(s)	482, 677, 816, 977
HpyF10VI	GCNNNNNNNGC	4 cut(s)	266, 418, 716, 1007
HpyF3I	CTNAG	1 cut(s)	108
HpySE526I	ACGT	2 cut(s)	249, 826
Hsp92II	CATG	3 cut(s)	54, 586, 967
Kpn2I	TCCGGA	1 cut(s)	205
Kzo9I	GATC	3 cut(s)	589, 803, 943
LguI	GCTCTTC	1 cut(s)	1017
LmnI	GCTCC	3 cut(s)	187, 208, 208
Lsp1109I	GCAGC	2 cut(s)	879, 894
MaeI	CTAG	1 cut(s)	782
MaeII	ACGT	2 cut(s)	249, 826
MaeIII	GTNAC	1 cut(s)	681
MalI	GATC	3 cut(s)	591, 805, 945
MboI	GATC	3 cut(s)	589, 803, 943
MboII	GAAGA	4 cut(s)	164, 268, 953, 1004
MflI	RGATCY	3 cut(s)	589, 803, 943
MhlI	GDGCHC	3 cut(s)	213, 518, 877
MlsI	TGGCCA	1 cut(s)	5
MluCI	AATT	4 cut(s)	193, 398, 474, 981
MluNI	TGGCCA	1 cut(s)	5
MlyI	GAGTC	2 cut(s)	110, 234
MmeI	TCCRAC	1 cut(s)	895
MnlI	CCTC	4 cut(s)	40, 195, 354, 793
Mox20I	TGGCCA	1 cut(s)	5
MroI	TCCGGA	1 cut(s)	205
MscI	TGGCCA	1 cut(s)	5
MseI	TTAA	1 cut(s)	173
MslI	CAYNNNNRTG	1 cut(s)	49
Msp20I	TGGCCA	1 cut(s)	5
MspA1I	CMGCKG	1 cut(s)	870
MspI	CCGG	3 cut(s)	206, 229, 409
MspR9I	CCNGG	2 cut(s)	409, 938
MvaI	CCWGG	1 cut(s)	938
MwoI	GCNNNNNNNGC	4 cut(s)	266, 418, 716, 1007
NciI	CCSGG	1 cut(s)	409
NdeI	CATATG	1 cut(s)	796
NdeII	GATC	3 cut(s)	589, 803, 943
NlaIII	CATG	3 cut(s)	54, 586, 967
NlaIV	GGNNCC	6 cut(s)	204, 210, 406, 591, 805, 930
NmuCI	GTSAC	1 cut(s)	681
NspI	RCATGY	1 cut(s)	967
PciI	ACATGT	1 cut(s)	963
PciSI	GCTCTTC	1 cut(s)	1017
PcsI	WCGNNNNNNNCGW	1 cut(s)	326
PfeI	GAWTC	3 cut(s)	340, 374, 617
PflMI	CCANNNNNTGG	3 cut(s)	524, 548, 599
PkrI	GCNGC	4 cut(s)	563, 855, 869, 884
PleI	GAGTC	2 cut(s)	109, 233
PpsI	GAGTC	2 cut(s)	109, 233
Ppu21I	YACGTR	1 cut(s)	827
PpuMI	RGGWCCY	1 cut(s)	404
PscI	ACATGT	1 cut(s)	963
Psp5II	RGGWCCY	1 cut(s)	404
Psp6I	CCWGG	1 cut(s)	936
PspGI	CCWGG	1 cut(s)	936
PspN4I	GGNNCC	6 cut(s)	204, 210, 406, 591, 805, 930
PspPI	GGNCC	4 cut(s)	231, 404, 490, 527
PspPPI	RGGWCCY	1 cut(s)	404
PsuI	RGATCY	3 cut(s)	589, 803, 943
PvuII	CAGCTG	1 cut(s)	870
RsaI	GTAC	5 cut(s)	486, 614, 638, 825, 834
RsaNI	GTAC	5 cut(s)	485, 613, 637, 824, 833
RseI	CAYNNNNRTG	1 cut(s)	49
SapI	GCTCTTC	1 cut(s)	1017
SaqAI	TTAA	1 cut(s)	173
SatI	GCNGC	4 cut(s)	562, 854, 868, 883
Sau3AI	GATC	3 cut(s)	589, 803, 943
Sau96I	GGNCC	4 cut(s)	231, 404, 490, 527
ScaI	AGTACT	3 cut(s)	486, 638, 834
SchI	GAGTC	2 cut(s)	110, 234
ScrFI	CCNGG	2 cut(s)	409, 938
SduI	GDGCHC	3 cut(s)	213, 518, 877
SinI	GGWCC	3 cut(s)	404, 490, 527
SmiMI	CAYNNNNRTG	1 cut(s)	49
Sse9I	AATT	4 cut(s)	193, 398, 474, 981
SsiI	CCGC	4 cut(s)	41, 217, 561, 854
SspMI	CTAG	1 cut(s)	782
StyD4I	CCNGG	2 cut(s)	407, 936
StyI	CCWWGG	1 cut(s)	378
TaiI	ACGT	2 cut(s)	252, 829
TaqI	TCGA	2 cut(s)	363, 987
TasI	AATT	4 cut(s)	193, 398, 474, 981
TatI	WGTACW	3 cut(s)	484, 636, 832
TauI	GCSGC	2 cut(s)	564, 856
TfiI	GAWTC	3 cut(s)	340, 374, 617
Tru1I	TTAA	1 cut(s)	173
Tru9I	TTAA	1 cut(s)	173
TscAI	CASTG	1 cut(s)	604
TseFI	GTSAC	1 cut(s)	681
TseI	GCWGC	2 cut(s)	867, 882
Tsp45I	GTSAC	1 cut(s)	681
TspDTI	ATGAA	2 cut(s)	39, 114
TspGWI	ACGGA	2 cut(s)	501, 527
TspRI	CASTG	1 cut(s)	604
Van91I	CCANNNNNTGG	3 cut(s)	524, 548, 599
VpaK11BI	GGWCC	3 cut(s)	404, 490, 527
XceI	RCATGY	1 cut(s)	967
XcmI	CCANNNNNNNNNTGG	1 cut(s)	786
XspI	CTAG	1 cut(s)	782
ZrmI	AGTACT	3 cut(s)	486, 638, 834

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.