Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000006

Orthogroup ID

OG0007313

Physical Location & Seq

Genomic Coordinates Reverse (-)

30391009 .. 30395999

Gene Structure 4991 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_6G00407740.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1020 bp

ATGGCCAAAGCTCTGAACCTAATACCCACCTCAACTTTCCCGCCATTTTCATGCCCCAGAATACCCACAAGGAGATTATTCTCTGTTAGAGCTACAGCAGAGTCCCCTGAGACGCCCACAAGTTCATCAGCTTCAGTTCAGACCAAACCAGAAGAAGTAAAGCCCGAACCTTTAACATTTGCTCCTCCACCCAATTTCAAGGCTCCGGAGCCCAAGCGGTTCGGAGTCCGACCCGATAAGTCTTTGGACGTGTTGGGTGCCTCTCTTGCCTTGTTCTTCCGATTGGGCTGTGGCGTTTTCGTTTCTGGGTATTCGTTTTCGTTTGTTCCGAAGGATGAGATTCCTCCAGACCAGTATGCTCTCGATTATAATGATTCCAAGGTCAAGGAGACTTCAAAATTAGGACCCCGGCCAGAGAAGCCTGTTGAGATATATGAGTTTGAAGGCTGTCCATTCTGCCGGAAGGTTAGGGAAATTGTTGCAGTACTGGACCTTGATGTTATATTTTATCCGTGCCCAAGAAATGGTCCAAACTTCCGTACAAAGGTTGGGGAGATGGGCGGCAAAAAGCAGTTTCCTTACATGGTGGATCCAAACACTGGTGTTTCAATGTACGAATCAGATGACATAATCAAGTACTTGGTTGGGAAGTATGGTGATGGAAATGTTCCTATTGCATTGTCACTTGGTTTATTGACGACTTTGACTGCTGGCCTTGCTCTGATTGGTCGCTCGGGAAAGGGAAGTATCTATACTCCATCAAGACTACCACCCAAACCACTAGAAATATGGGCATATGAGGGATCCCCTTTTTGCAAACTTGTCCGTGAAGTACTCGTAGAGTTAGAACTGCCGCACTTATATCGCAGCTGTGCTCGTGGCAGCCCCAAACGACAGATACTATATCAGAAAGTCGGACGTTTTCAGGCACCATACCTGGAAGATCCCAATACTGGGGTGAACATGTTTGAAAGTGCAGAAATTATCGAATATCTAAAAGCAACTTATGCGCTTCAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

GST_N_3

Protein Analysis

339

Amino Acids

37.64

Weight (kDa)

8.68

Isoelectric Point (pI)

44.39

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
GST_N_3	PF13417	145 - 219	7.9e-15	Glutathione S-transferase, N-terminal domain
GST_N_2	PF13409	150 - 214	7.7e-07	Glutathione S-transferase, N-terminal domain
GST_N_3	PF13417	266 - 337	6.7e-12	Glutathione S-transferase, N-terminal domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007313)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G03880
fragaria_vesca	FvH4_6g18820 FvH4_6g18820 FvH4_6g18820 FvH4_6g18820 FvH4_6g18820 FvH4_6g18820 FvH4_6g18820
malus_domestica	MD12G1036800.v1.1 MD14G1023500.v1.1
prunus_persica	Prupe.7G109400_v2.0.a1 Prupe.7G109400_v2.0.a1 Prupe.7G109400_v2.0.a1
pyrus_communis	pycom12g02420 pycom14g02240
rosa_chinensis	RchiOBHm_Chr3g0473831
rosa_laevigata	RLG00000023980
rosa_multiflora	Rmu_sc0005561.1_g000004
rosa_roxburghii	Rroxscaffold_6G00407740
rosa_rugosa	Rorug03G0135800
rosa_samantha	Rh3AG186300 Rh3BG214900 Rh3CG211600 Rh3DG210700
rosa_wichuraiana	Rw3G017040

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	369
AccB1I	GGYRCC	2 cut(s)	257, 928
AccB7I	CCANNNNNTGG	2 cut(s)	524, 599
AccIII	TCCGGA	1 cut(s)	205
AciI	CCGC	4 cut(s)	41, 217, 561, 854
AclWI	GGATC	5 cut(s)	584, 597, 798, 811, 938
AcoI	YGGCCR	2 cut(s)	3, 410
AcuI	CTGAAG	1 cut(s)	117
AcyI	GRCGYC	1 cut(s)	113
AfaI	GTAC	5 cut(s)	486, 541, 614, 638, 834
AfiI	CCNNNNNNNGG	5 cut(s)	524, 544, 599, 953, 954
AflIII	ACRYGT	2 cut(s)	249, 963
AgsI	TTSAA	6 cut(s)	199, 396, 443, 609, 971, 1016
AjiI	CACGTC	1 cut(s)	250
AjnI	CCWGG	1 cut(s)	936
AluBI	AGCT	4 cut(s)	11, 92, 131, 870
AluI	AGCT	4 cut(s)	11, 92, 131, 870
Alw21I	GWGCWC	1 cut(s)	877
Alw26I	GTCTC	2 cut(s)	104, 383
AlwI	GGATC	5 cut(s)	584, 597, 798, 811, 938
Ama87I	CYCGRG	1 cut(s)	733
Aor13HI	TCCGGA	1 cut(s)	205
AoxI	GGCC	3 cut(s)	3, 410, 712
ApeKI	GCWGC	2 cut(s)	867, 882
AspLEI	GCGC	1 cut(s)	1012
AspS9I	GGNCC	3 cut(s)	404, 490, 527
AsuC2I	CCSGG	1 cut(s)	409
AsuHPI	GGTGA	2 cut(s)	668, 970
AvaI	CYCGRG	1 cut(s)	733
AvaII	GGWCC	3 cut(s)	404, 490, 527
BaeGI	GKGCMC	1 cut(s)	518
BalI	TGGCCA	1 cut(s)	5
BamHI	GGATCC	2 cut(s)	589, 803
BanI	GGYRCC	2 cut(s)	257, 928
BanII	GRGCYC	1 cut(s)	213
BarI	GAAGNNNNNNTAC	2 cut(s)	736, 768
BauI	CACGAG	1 cut(s)	876
Bbv12I	GWGCWC	1 cut(s)	877
BbvI	GCAGC	2 cut(s)	879, 894
BccI	CCATC	3 cut(s)	550, 653, 766
BcgI	CGANNNNNNTGC	2 cut(s)	845, 879
BciT130I	CCWGG	1 cut(s)	938
BcnI	CCSGG	1 cut(s)	409
BcoDI	GTCTC	2 cut(s)	104, 383
BfaI	CTAG	1 cut(s)	782
BfmI	CTRYAG	1 cut(s)	93
BisI	GCNGC	4 cut(s)	562, 854, 868, 883
BlsI	GCNGC	4 cut(s)	563, 855, 869, 884
BmcAI	AGTACT	3 cut(s)	486, 638, 834
Bme1390I	CCNGG	2 cut(s)	409, 938
Bme18I	GGWCC	3 cut(s)	404, 490, 527
BmeT110I	CYCGRG	1 cut(s)	733
BmgBI	CACGTC	1 cut(s)	250
BmgT120I	GGNCC	3 cut(s)	404, 490, 527
BmiI	GGNNCC	7 cut(s)	204, 210, 259, 406, 591, 805, 930
BmrFI	CCNGG	2 cut(s)	409, 938
BmrI	ACTGGG	1 cut(s)	963
BmuI	ACTGGG	1 cut(s)	963
BpmI	CTGGAG	1 cut(s)	330
BpuMI	CCSGG	1 cut(s)	409
BsaHI	GRCGYC	1 cut(s)	113
BsaJI	CCNNGG	2 cut(s)	378, 407
BsaWI	WCCGGW	1 cut(s)	205
BsaXI	ACNNNNNCTCC	2 cut(s)	166, 196
Bsc4I	CCNNNNNNNGG	5 cut(s)	524, 544, 599, 953, 954
Bse1I	ACTGG	4 cut(s)	352, 492, 604, 958
BseAI	TCCGGA	1 cut(s)	205
BseBI	CCWGG	1 cut(s)	938
BseDI	CCNNGG	2 cut(s)	378, 407
BseGI	GGATG	1 cut(s)	340
BseLI	CCNNNNNNNGG	5 cut(s)	524, 544, 599, 953, 954
BseMII	CTCAG	1 cut(s)	99
BseNI	ACTGG	4 cut(s)	352, 492, 604, 958
BseRI	GAGGAG	1 cut(s)	174
BseSI	GKGCMC	1 cut(s)	518
BseXI	GCAGC	2 cut(s)	879, 894
BsgI	GTGCAG	1 cut(s)	996
BshFI	GGCC	3 cut(s)	5, 412, 714
BshNI	GGYRCC	2 cut(s)	257, 928
BsiHKAI	GWGCWC	1 cut(s)	877
BsiHKCI	CYCGRG	1 cut(s)	733
BsiSI	CCGG	3 cut(s)	206, 409, 460
BslFI	GGGAC	1 cut(s)	88
BslI	CCNNNNNNNGG	5 cut(s)	524, 544, 599, 953, 954
BsmAI	GTCTC	2 cut(s)	104, 383
BsmBI	CGTCTC	1 cut(s)	104
BsmFI	GGGAC	1 cut(s)	88
BsnI	GGCC	3 cut(s)	5, 412, 714
BsoBI	CYCGRG	1 cut(s)	733
Bsp1286I	GDGCHC	3 cut(s)	213, 518, 877
Bsp13I	TCCGGA	1 cut(s)	205
Bsp143I	GATC	3 cut(s)	589, 803, 943
BspACI	CCGC	4 cut(s)	41, 217, 561, 854
BspANI	GGCC	3 cut(s)	5, 412, 714
BspCNI	CTCAG	1 cut(s)	100
BspEI	TCCGGA	1 cut(s)	205
BspLI	GGNNCC	7 cut(s)	204, 210, 259, 406, 591, 805, 930
BspPI	GGATC	5 cut(s)	584, 597, 798, 811, 938
BspT107I	GGYRCC	2 cut(s)	257, 928
BsrI	ACTGG	4 cut(s)	352, 492, 604, 958
BssECI	CCNNGG	2 cut(s)	378, 407
BssMI	GATC	3 cut(s)	589, 803, 943
BssNI	GRCGYC	1 cut(s)	113
BssSI	CACGAG	1 cut(s)	876
BssT1I	CCWWGG	1 cut(s)	378
Bst2BI	CACGAG	1 cut(s)	876
Bst2UI	CCWGG	1 cut(s)	938
BstACI	GRCGYC	1 cut(s)	113
BstAPI	GCANNNNNTGC	1 cut(s)	1007
BstC8I	GCNNGC	1 cut(s)	712
BstDEI	CTNAG	1 cut(s)	108
BstF5I	GGATG	1 cut(s)	340
BstHHI	GCGC	1 cut(s)	1012
BstKTI	GATC	3 cut(s)	592, 806, 946
BstMAI	GTCTC	2 cut(s)	104, 383
BstMBI	GATC	3 cut(s)	589, 803, 943
BstMWI	GCNNNNNNNGC	4 cut(s)	266, 418, 716, 1007
BstNI	CCWGG	1 cut(s)	938
BstNSI	RCATGY	1 cut(s)	967
BstSCI	CCNGG	2 cut(s)	407, 936
BstSFI	CTRYAG	1 cut(s)	93
BstSLI	GKGCMC	1 cut(s)	518
BstV1I	GCAGC	2 cut(s)	879, 894
BstX2I	RGATCY	3 cut(s)	589, 803, 943
BstYI	RGATCY	3 cut(s)	589, 803, 943
BsuRI	GGCC	3 cut(s)	5, 412, 714
BtrI	CACGTC	1 cut(s)	250
BtsCI	GGATG	1 cut(s)	340
BtsIMutI	CAGTG	1 cut(s)	597
Cac8I	GCNNGC	1 cut(s)	712
CfoI	GCGC	1 cut(s)	1012
Cfr13I	GGNCC	3 cut(s)	404, 490, 527
CseI	GACGC	1 cut(s)	121
Csp6I	GTAC	5 cut(s)	485, 540, 613, 637, 833
CviAII	CATG	3 cut(s)	51, 583, 964
CviQI	GTAC	5 cut(s)	485, 540, 613, 637, 833
DdeI	CTNAG	1 cut(s)	108
DpnI	GATC	3 cut(s)	591, 805, 945
DpnII	GATC	3 cut(s)	589, 803, 943
EaeI	YGGCCR	2 cut(s)	3, 410
Eco130I	CCWWGG	1 cut(s)	378
Eco24I	GRGCYC	1 cut(s)	213
Eco47I	GGWCC	3 cut(s)	404, 490, 527
Eco57I	CTGAAG	1 cut(s)	117
Eco88I	CYCGRG	1 cut(s)	733
EcoO109I	RGGNCCY	1 cut(s)	404
EcoRII	CCWGG	1 cut(s)	936
EcoT14I	CCWWGG	1 cut(s)	378
EcoT38I	GRGCYC	1 cut(s)	213
ErhI	CCWWGG	1 cut(s)	378
Esp3I	CGTCTC	1 cut(s)	104
FaeI	CATG	3 cut(s)	54, 586, 967
FaqI	GGGAC	1 cut(s)	88
FatI	CATG	3 cut(s)	50, 582, 963
FauI	CCCGC	1 cut(s)	48
FauNDI	CATATG	1 cut(s)	796
Fnu4HI	GCNGC	4 cut(s)	562, 854, 868, 883
FokI	GGATG	1 cut(s)	347
FriOI	GRGCYC	1 cut(s)	213
Fsp4HI	GCNGC	4 cut(s)	562, 854, 868, 883
FspBI	CTAG	1 cut(s)	782
GlaI	GCGC	1 cut(s)	1011
GluI	GCNGC	4 cut(s)	562, 854, 868, 883
GsuI	CTGGAG	1 cut(s)	330
HaeIII	GGCC	3 cut(s)	5, 412, 714
HapII	CCGG	3 cut(s)	206, 409, 460
HgaI	GACGC	1 cut(s)	121
HhaI	GCGC	1 cut(s)	1012
Hin1I	GRCGYC	1 cut(s)	113
Hin1II	CATG	3 cut(s)	54, 586, 967
Hin6I	GCGC	1 cut(s)	1010
HinP1I	GCGC	1 cut(s)	1010
HinfI	GANTC	5 cut(s)	101, 225, 340, 374, 617
HpaII	CCGG	3 cut(s)	206, 409, 460
HphI	GGTGA	2 cut(s)	668, 970
Hpy166II	GTNNAC	1 cut(s)	961
Hpy188III	TCNNGA	5 cut(s)	206, 347, 362, 735, 762
Hpy8I	GTNNAC	1 cut(s)	961
HpyAV	CCTTC	3 cut(s)	325, 437, 457
HpyCH4IV	ACGT	2 cut(s)	249, 919
HpyCH4V	TGCA	4 cut(s)	482, 677, 816, 977
HpyF10VI	GCNNNNNNNGC	4 cut(s)	266, 418, 716, 1007
HpyF3I	CTNAG	1 cut(s)	108
HpySE526I	ACGT	2 cut(s)	249, 919
Hsp92I	GRCGYC	1 cut(s)	113
Hsp92II	CATG	3 cut(s)	54, 586, 967
HspAI	GCGC	1 cut(s)	1010
Kpn2I	TCCGGA	1 cut(s)	205
Kzo9I	GATC	3 cut(s)	589, 803, 943
LmnI	GCTCC	3 cut(s)	187, 208, 208
Lsp1109I	GCAGC	2 cut(s)	879, 894
MaeI	CTAG	1 cut(s)	782
MaeII	ACGT	2 cut(s)	249, 919
MaeIII	GTNAC	1 cut(s)	681
MalI	GATC	3 cut(s)	591, 805, 945
MboI	GATC	3 cut(s)	589, 803, 943
MboII	GAAGA	3 cut(s)	164, 268, 953
MflI	RGATCY	3 cut(s)	589, 803, 943
MhlI	GDGCHC	3 cut(s)	213, 518, 877
MlsI	TGGCCA	1 cut(s)	5
MluCI	AATT	4 cut(s)	193, 398, 474, 981
MluNI	TGGCCA	1 cut(s)	5
MlyI	GAGTC	2 cut(s)	110, 234
MmeI	TCCRAC	2 cut(s)	253, 895
MnlI	CCTC	5 cut(s)	40, 195, 271, 354, 793
Mox20I	TGGCCA	1 cut(s)	5
MroI	TCCGGA	1 cut(s)	205
MscI	TGGCCA	1 cut(s)	5
MseI	TTAA	1 cut(s)	173
MslI	CAYNNNNRTG	1 cut(s)	49
Msp20I	TGGCCA	1 cut(s)	5
MspA1I	CMGCKG	1 cut(s)	870
MspI	CCGG	3 cut(s)	206, 409, 460
MspR9I	CCNGG	2 cut(s)	409, 938
MvaI	CCWGG	1 cut(s)	938
MwoI	GCNNNNNNNGC	4 cut(s)	266, 418, 716, 1007
NciI	CCSGG	1 cut(s)	409
NdeI	CATATG	1 cut(s)	796
NdeII	GATC	3 cut(s)	589, 803, 943
NlaIII	CATG	3 cut(s)	54, 586, 967
NlaIV	GGNNCC	7 cut(s)	204, 210, 259, 406, 591, 805, 930
NmuCI	GTSAC	1 cut(s)	681
NspI	RCATGY	1 cut(s)	967
PciI	ACATGT	1 cut(s)	963
PcsI	WCGNNNNNNNCGW	1 cut(s)	326
PfeI	GAWTC	3 cut(s)	340, 374, 617
PflMI	CCANNNNNTGG	2 cut(s)	524, 599
PkrI	GCNGC	4 cut(s)	563, 855, 869, 884
PleI	GAGTC	2 cut(s)	109, 233
PpsI	GAGTC	2 cut(s)	109, 233
PpuMI	RGGWCCY	1 cut(s)	404
PscI	ACATGT	1 cut(s)	963
PsiI	TTATAA	1 cut(s)	369
Psp5II	RGGWCCY	1 cut(s)	404
Psp6I	CCWGG	1 cut(s)	936
PspGI	CCWGG	1 cut(s)	936
PspN4I	GGNNCC	7 cut(s)	204, 210, 259, 406, 591, 805, 930
PspPI	GGNCC	3 cut(s)	404, 490, 527
PspPPI	RGGWCCY	1 cut(s)	404
PsuI	RGATCY	3 cut(s)	589, 803, 943
PvuII	CAGCTG	1 cut(s)	870
RsaI	GTAC	5 cut(s)	486, 541, 614, 638, 834
RsaNI	GTAC	5 cut(s)	485, 540, 613, 637, 833
RseI	CAYNNNNRTG	1 cut(s)	49
SaqAI	TTAA	1 cut(s)	173
SatI	GCNGC	4 cut(s)	562, 854, 868, 883
Sau3AI	GATC	3 cut(s)	589, 803, 943
Sau96I	GGNCC	3 cut(s)	404, 490, 527
ScaI	AGTACT	3 cut(s)	486, 638, 834
SchI	GAGTC	2 cut(s)	110, 234
ScrFI	CCNGG	2 cut(s)	409, 938
SduI	GDGCHC	3 cut(s)	213, 518, 877
SfcI	CTRYAG	1 cut(s)	93
SinI	GGWCC	3 cut(s)	404, 490, 527
SmiMI	CAYNNNNRTG	1 cut(s)	49
Sse9I	AATT	4 cut(s)	193, 398, 474, 981
SsiI	CCGC	4 cut(s)	41, 217, 561, 854
SspMI	CTAG	1 cut(s)	782
StyD4I	CCNGG	2 cut(s)	407, 936
StyI	CCWWGG	1 cut(s)	378
TaiI	ACGT	2 cut(s)	252, 922
TaqI	TCGA	2 cut(s)	363, 987
TasI	AATT	4 cut(s)	193, 398, 474, 981
TatI	WGTACW	3 cut(s)	484, 636, 832
TauI	GCSGC	2 cut(s)	564, 856
TfiI	GAWTC	3 cut(s)	340, 374, 617
Tru1I	TTAA	1 cut(s)	173
Tru9I	TTAA	1 cut(s)	173
TscAI	CASTG	1 cut(s)	604
TseFI	GTSAC	1 cut(s)	681
TseI	GCWGC	2 cut(s)	867, 882
Tsp45I	GTSAC	1 cut(s)	681
TspDTI	ATGAA	2 cut(s)	39, 114
TspGWI	ACGGA	3 cut(s)	501, 527, 815
TspRI	CASTG	1 cut(s)	604
Van91I	CCANNNNNTGG	2 cut(s)	524, 599
VpaK11BI	GGWCC	3 cut(s)	404, 490, 527
XceI	RCATGY	1 cut(s)	967
XcmI	CCANNNNNNNNNTGG	1 cut(s)	786
XspI	CTAG	1 cut(s)	782
ZrmI	AGTACT	3 cut(s)	486, 638, 834

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.