AT5G04937

Encoded by

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
5
OG0017110
Physical Location & Seq
Forward (+)
1452440 .. 1453521
1082 bp
Loading structure...
UTR
Exon/CDS
Intron
AT5G04937.1

Sequence Viewer

Length: 615 bp
ATGTTAAAATTTGGAATTTTGGAGATTGCTGGAGTTAGATCACATGGTCAAGGTCCTTACCATGCCGGCTGGATGATAAATCCAAAATTATTTGGTGATGGACGCACATGGAGTTATGGGTTCTGGAAGGGTGCAAATGGAGCAGGTTGTTATAATACAAGATGTCCTGAATTTTTGTTCAAGTGTCAAAAACTAAATTCTTTGGGCCACAACCTACTGACCCTAAAGGAGAAAAGGGATAAAAATTCAGGAAATTGGTGGCTATCAGATGTGAACTTAACAACAGAAGATGATCAAATTGGTTATTGGCCAAAAGAATTGTTTGATCTTATAAGGAATAGCGTGGACATGATTGGAGTTGGCGGGATAGTTCAAGCTTCTCCTTCTGGTGTAAGCCCTCCAATGGGTAACGGTCATAAACCAACTGAAGATGTCAATGCGGCAGCACGCGTCATGAAACTTGAAATTGTAGATTCTAATTATAAGATCCAGGAAAGTGACAAATACAAGTTAGAAAAACTATTAGACAGTGCTAAATGTTATGGCTTAAAAGATGGAAAGGGCATTGTATTGTTCTCATATGGTGGACCTGGAGGACATTCTTGTGGGATCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Neprosin Neprosin_AP

Protein Analysis

204

Amino Acids

22.45

Weight (kDa)

8.51

Isoelectric Point (pI)

21.9

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Neprosin PF03080 21 - 197 8.1e-40 Neprosin
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0017110)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G04937 AT5G05030 AT5G11660 AT5G25410 AT5G25415 AT5G36680 AT5G36770 AT5G60380
fragaria_vesca FvH4_2g09090 FvH4_4g25910
malus_domestica MD10G1076000.v1.1 MD10G1207400.v1.1
pyrus_communis pycom02g18760

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 3 cut(s) 153, 332, 483
Acc36I ACCTGC 1 cut(s) 134
AccII CGCG 1 cut(s) 450
AciI CCGC 2 cut(s) 363, 440
AclWI GGATC 1 cut(s) 481
AcoI YGGCCR 1 cut(s) 308
AcsI RAATTY 5 cut(s) 8, 15, 170, 196, 244
AcuI CTGAAG 1 cut(s) 447
AfiI CCNNNNNNNGG 2 cut(s) 403, 404
AflIII ACRYGT 1 cut(s) 448
AgsI TTSAA 3 cut(s) 181, 374, 464
AjnI CCWGG 2 cut(s) 489, 589
AluBI AGCT 1 cut(s) 377
AluI AGCT 1 cut(s) 377
AlwI GGATC 1 cut(s) 481
AoxI GGCC 2 cut(s) 205, 308
ApeKI GCWGC 1 cut(s) 443
ApoI RAATTY 5 cut(s) 8, 15, 170, 196, 244
AspS9I GGNCC 3 cut(s) 53, 205, 587
AsuHPI GGTGA 1 cut(s) 107
AvaII GGWCC 2 cut(s) 53, 587
BalI TGGCCA 1 cut(s) 310
BbvI GCAGC 1 cut(s) 455
BccI CCATC 2 cut(s) 92, 548
BciT130I CCWGG 2 cut(s) 491, 591
BclI TGATCA 1 cut(s) 292
BfuAI ACCTGC 1 cut(s) 134
BisI GCNGC 2 cut(s) 441, 444
BlsI GCNGC 2 cut(s) 442, 445
Bme1390I CCNGG 2 cut(s) 491, 591
Bme18I GGWCC 2 cut(s) 53, 587
BmgT120I GGNCC 3 cut(s) 53, 205, 587
BmrFI CCNGG 2 cut(s) 491, 591
BpmI CTGGAG 2 cut(s) 51, 612
Bsc4I CCNNNNNNNGG 2 cut(s) 403, 404
Bse118I RCCGGY 1 cut(s) 65
BseBI CCWGG 2 cut(s) 491, 591
BseGI GGATG 1 cut(s) 78
BseLI CCNNNNNNNGG 2 cut(s) 403, 404
BseXI GCAGC 1 cut(s) 455
Bsh1236I CGCG 1 cut(s) 450
BshFI GGCC 2 cut(s) 207, 310
BsiSI CCGG 1 cut(s) 66
BslI CCNNNNNNNGG 2 cut(s) 403, 404
BsnI GGCC 2 cut(s) 207, 310
Bsp143I GATC 5 cut(s) 38, 292, 325, 486, 609
BspACI CCGC 2 cut(s) 363, 440
BspANI GGCC 2 cut(s) 207, 310
BspFNI CGCG 1 cut(s) 450
BspHI TCATGA 1 cut(s) 453
BspMI ACCTGC 1 cut(s) 134
BspPI GGATC 1 cut(s) 481
BsrFI RCCGGY 1 cut(s) 65
BssAI RCCGGY 1 cut(s) 65
BssMI GATC 5 cut(s) 38, 292, 325, 486, 609
Bst2UI CCWGG 2 cut(s) 491, 591
Bst4CI ACNGT 2 cut(s) 413, 530
BstC8I GCNNGC 2 cut(s) 67, 448
BstF5I GGATG 1 cut(s) 78
BstFNI CGCG 1 cut(s) 450
BstKTI GATC 5 cut(s) 41, 295, 328, 489, 612
BstMBI GATC 5 cut(s) 38, 292, 325, 486, 609
BstMWI GCNNNNNNNGC 1 cut(s) 140
BstNI CCWGG 2 cut(s) 491, 591
BstSCI CCNGG 2 cut(s) 489, 589
BstUI CGCG 1 cut(s) 450
BstV1I GCAGC 1 cut(s) 455
BstX2I RGATCY 2 cut(s) 486, 609
BstYI RGATCY 2 cut(s) 486, 609
BsuRI GGCC 2 cut(s) 207, 310
BtsCI GGATG 1 cut(s) 78
BtsIMutI CAGTG 1 cut(s) 535
BveI ACCTGC 1 cut(s) 134
Cac8I GCNNGC 2 cut(s) 67, 448
CciI TCATGA 1 cut(s) 453
Cfr10I RCCGGY 1 cut(s) 65
Cfr13I GGNCC 3 cut(s) 53, 205, 587
CseI GACGC 2 cut(s) 111, 439
CviAII CATG 5 cut(s) 44, 62, 108, 349, 454
CviJI RGCY 7 cut(s) 69, 207, 262, 310, 377, 396, 546
CviKI_1 RGCY 7 cut(s) 69, 207, 262, 310, 377, 396, 546
DpnI GATC 5 cut(s) 40, 294, 327, 488, 611
DpnII GATC 5 cut(s) 38, 292, 325, 486, 609
EaeI YGGCCR 1 cut(s) 308
Eco47I GGWCC 2 cut(s) 53, 587
Eco57I CTGAAG 1 cut(s) 447
EcoO109I RGGNCCY 1 cut(s) 53
EcoRII CCWGG 2 cut(s) 489, 589
FaeI CATG 5 cut(s) 47, 65, 111, 352, 457
FatI CATG 5 cut(s) 43, 61, 107, 348, 453
FauI CCCGC 1 cut(s) 356
FauNDI CATATG 1 cut(s) 580
FbaI TGATCA 1 cut(s) 292
Fnu4HI GCNGC 2 cut(s) 441, 444
FokI GGATG 1 cut(s) 85
Fsp4HI GCNGC 2 cut(s) 441, 444
GluI GCNGC 2 cut(s) 441, 444
GsuI CTGGAG 2 cut(s) 51, 612
HaeIII GGCC 2 cut(s) 207, 310
HapII CCGG 1 cut(s) 66
HgaI GACGC 2 cut(s) 111, 439
Hin1II CATG 5 cut(s) 47, 65, 111, 352, 457
HindIII AAGCTT 1 cut(s) 375
HinfI GANTC 1 cut(s) 473
HpaII CCGG 1 cut(s) 66
HphI GGTGA 1 cut(s) 107
Hpy166II GTNNAC 3 cut(s) 274, 346, 587
Hpy188I TCNGA 1 cut(s) 268
Hpy188III TCNNGA 4 cut(s) 124, 167, 249, 454
Hpy8I GTNNAC 3 cut(s) 274, 346, 587
HpyAV CCTTC 2 cut(s) 121, 393
HpyCH4III ACNGT 2 cut(s) 413, 530
HpyCH4V TGCA 1 cut(s) 134
HpyF10VI GCNNNNNNNGC 1 cut(s) 140
Hsp92II CATG 5 cut(s) 47, 65, 111, 352, 457
KroI GCCGGC 1 cut(s) 65
KroNI GCCGGC 1 cut(s) 67
Ksp22I TGATCA 1 cut(s) 292
Kzo9I GATC 5 cut(s) 38, 292, 325, 486, 609
LmnI GCTCC 1 cut(s) 140
Lsp1109I GCAGC 1 cut(s) 455
MaeIII GTNAC 2 cut(s) 407, 497
MalI GATC 5 cut(s) 40, 294, 327, 488, 611
MboI GATC 5 cut(s) 38, 292, 325, 486, 609
MboII GAAGA 2 cut(s) 299, 440
MflI RGATCY 2 cut(s) 486, 609
MlsI TGGCCA 1 cut(s) 310
MluI ACGCGT 1 cut(s) 448
MluNI TGGCCA 1 cut(s) 310
MnlI CCTC 2 cut(s) 408, 587
Mox20I TGGCCA 1 cut(s) 310
MroNI GCCGGC 1 cut(s) 65
MscI TGGCCA 1 cut(s) 310
MseI TTAA 3 cut(s) 5, 278, 548
MslI CAYNNNNRTG 1 cut(s) 603
Msp20I TGGCCA 1 cut(s) 310
MspI CCGG 1 cut(s) 66
MspR9I CCNGG 2 cut(s) 491, 591
MvaI CCWGG 2 cut(s) 491, 591
MvnI CGCG 1 cut(s) 450
MwoI GCNNNNNNNGC 1 cut(s) 140
NaeI GCCGGC 1 cut(s) 67
NdeI CATATG 1 cut(s) 580
NdeII GATC 5 cut(s) 38, 292, 325, 486, 609
NgoMIV GCCGGC 1 cut(s) 65
NlaIII CATG 5 cut(s) 47, 65, 111, 352, 457
NmuCI GTSAC 1 cut(s) 497
PagI TCATGA 1 cut(s) 453
PdiI GCCGGC 1 cut(s) 67
PfeI GAWTC 1 cut(s) 473
PfoI TCCNGGA 1 cut(s) 489
PkrI GCNGC 2 cut(s) 442, 445
PpuMI RGGWCCY 1 cut(s) 53
PsiI TTATAA 3 cut(s) 153, 332, 483
Psp5II RGGWCCY 1 cut(s) 53
Psp6I CCWGG 2 cut(s) 489, 589
PspGI CCWGG 2 cut(s) 489, 589
PspPI GGNCC 3 cut(s) 53, 205, 587
PspPPI RGGWCCY 1 cut(s) 53
PsuI RGATCY 2 cut(s) 486, 609
RseI CAYNNNNRTG 1 cut(s) 603
SaqAI TTAA 3 cut(s) 5, 278, 548
SatI GCNGC 2 cut(s) 441, 444
Sau3AI GATC 5 cut(s) 38, 292, 325, 486, 609
Sau96I GGNCC 3 cut(s) 53, 205, 587
ScrFI CCNGG 2 cut(s) 491, 591
SetI ASST 5 cut(s) 55, 148, 216, 379, 592
SinI GGWCC 2 cut(s) 53, 587
SmiMI CAYNNNNRTG 1 cut(s) 603
SsiI CCGC 2 cut(s) 363, 440
StyD4I CCNGG 2 cut(s) 489, 589
TaaI ACNGT 2 cut(s) 413, 530
TauI GCSGC 1 cut(s) 443
TfiI GAWTC 1 cut(s) 473
Tru1I TTAA 3 cut(s) 5, 278, 548
Tru9I TTAA 3 cut(s) 5, 278, 548
TscAI CASTG 1 cut(s) 535
TseFI GTSAC 1 cut(s) 497
TseI GCWGC 1 cut(s) 443
Tsp45I GTSAC 1 cut(s) 497
TspDTI ATGAA 1 cut(s) 470
TspRI CASTG 1 cut(s) 535
VpaK11BI GGWCC 2 cut(s) 53, 587
XapI RAATTY 5 cut(s) 8, 15, 170, 196, 244
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.