AT5G36680

Encoded by

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
5
OG0017110
Physical Location & Seq
Reverse (-)
14406802 .. 14409137
2336 bp
Loading structure...
UTR
Exon/CDS
Intron
AT5G36680.1

Sequence Viewer

Length: 1002 bp
ATGGATATCTTTGTGAGTTTTGTTGTGTTTATCCTTTCAGTGTTATCTGTTGAATCTACTATACATATGAAATCCATCAAGATGAAACCAACAGGATGGGATTCTCAATCAGAGAATAAATTTGCAGAAAGAAGACACAACAATAAAATAGAATGTCCAAATGGAACCGTTCCTATTTTAAGAGCCAAGGAAAAACATGTCATACAATATCAAGAATACCCCATCAATAATTTTACCGTTCTTACAGCTAAATATCCGGGTACCCATATTGCGGGAATGAAAGTAGTAGAAAAACATAATTACAGAGGCGTAGAAGCAGGGCTAAGGACTTATAACTTGATAATTGATAAAAATCAAAGTACAAGTGCTCAAGCTTATGTAGCCAGAGCATTCAGTGGTGATGCCAATTCTATTCAAGTTGGATGGATGATCAATGAACAACTATTTGGCGACAAACGACCATGGTCGTATGGGACATGGCTGGGGAAACATGGAACAGGCTGTTTTAATGTAAAATGTCCAGGATTTGTTCAAGTAGCCAAAAATGGTCCAATAAGTGTACCTCTCAAGTTTGATTATCTTCTCTGGCTTACTATACATCAGGACAAGGAAACAAAAAACTGGTGGCTTACACAAACAAATCCAGATGATGATACTAAAAATCATTTGGGATATTGGCCAAAGGAGTTGTTTAATCTTCTAGGAGATGGTGCTGATTTCGTTGGATTTGGAGGAATGGTTTCAGGTGATCCAAGAACTCCAAGCCCACCGATGGGTAATGGTCGTCTTCCAAACAAAGATGACCGTCTATGGTCTGGTTATCTTGACCATCTTACCATAATCCAACCGGACTATGAACATGCCGGATTTAATTACCCTATGACAGAGCCTTTGGTGGACAGCAACGTATGCTATGATGTTAATTTAGTAGGATATGTTGATCATCAGGTTGGTATTGCTATGTCTTATGGTGGTCCTGGAGGTATTAAATGCGGTGATTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Neprosin Neprosin_AP

Protein Analysis

333

Amino Acids

37.37

Weight (kDa)

6.59

Isoelectric Point (pI)

31.23

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Neprosin PF03080 118 - 326 1.4e-48 Neprosin
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0017110)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G04937 AT5G05030 AT5G11660 AT5G25410 AT5G25415 AT5G36680 AT5G36770 AT5G60380
fragaria_vesca FvH4_2g09090 FvH4_4g25910
malus_domestica MD10G1076000.v1.1 MD10G1207400.v1.1
pyrus_communis pycom02g18760

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 333
Acc65I GGTACC 1 cut(s) 260
AccB1I GGYRCC 1 cut(s) 260
AciI CCGC 2 cut(s) 272, 993
AclWI GGATC 1 cut(s) 743
AcoI YGGCCR 1 cut(s) 677
AcsI RAATTY 1 cut(s) 119
AfaI GTAC 3 cut(s) 262, 361, 561
AfiI CCNNNNNNNGG 3 cut(s) 271, 772, 773
AflIII ACRYGT 1 cut(s) 196
AgsI TTSAA 3 cut(s) 53, 416, 533
AjnI CCWGG 2 cut(s) 520, 976
AjuI GAANNNNNNNTTGG 2 cut(s) 429, 461
AluBI AGCT 2 cut(s) 248, 374
AluI AGCT 2 cut(s) 248, 374
Alw21I GWGCWC 1 cut(s) 370
AlwI GGATC 1 cut(s) 743
AoxI GGCC 1 cut(s) 677
ApoI RAATTY 1 cut(s) 119
ArsI GACNNNNNNTTYG 2 cut(s) 874, 906
Asp700I GAANNNNTTC 1 cut(s) 739
Asp718I GGTACC 1 cut(s) 260
AspS9I GGNCC 2 cut(s) 548, 974
AsuC2I CCSGG 1 cut(s) 258
AsuHPI GGTGA 2 cut(s) 410, 758
AvaII GGWCC 2 cut(s) 548, 974
BalI TGGCCA 1 cut(s) 679
BanI GGYRCC 1 cut(s) 260
BbsI GAAGAC 2 cut(s) 139, 779
Bbv12I GWGCWC 1 cut(s) 370
BccI CCATC 7 cut(s) 83, 90, 230, 417, 701, 766, 837
BciT130I CCWGG 2 cut(s) 522, 978
BclI TGATCA 2 cut(s) 429, 940
BcnI CCSGG 1 cut(s) 258
BfaI CTAG 1 cut(s) 701
Bme1390I CCNGG 3 cut(s) 258, 522, 978
Bme18I GGWCC 2 cut(s) 548, 974
BmgT120I GGNCC 2 cut(s) 548, 974
BmiI GGNNCC 2 cut(s) 166, 262
BmrFI CCNGG 3 cut(s) 258, 522, 978
BmsI GCATC 1 cut(s) 391
BoxI GACNNNNGTC 1 cut(s) 463
BpiI GAAGAC 2 cut(s) 139, 779
BpmI CTGGAG 1 cut(s) 999
Bpu10I CCTNAGC 1 cut(s) 323
BpuEI CTTGAG 2 cut(s) 354, 551
BpuMI CCSGG 1 cut(s) 258
BsaBI GATNNNNATC 1 cut(s) 351
BsaJI CCNNGG 2 cut(s) 186, 461
BsaWI WCCGGW 1 cut(s) 847
BsaXI ACNNNNNCTCC 2 cut(s) 723, 753
Bsc4I CCNNNNNNNGG 3 cut(s) 271, 772, 773
Bse1I ACTGG 1 cut(s) 626
Bse8I GATNNNNATC 1 cut(s) 351
BseBI CCWGG 2 cut(s) 522, 978
BseDI CCNNGG 2 cut(s) 186, 461
BseGI GGATG 3 cut(s) 101, 428, 432
BseJI GATNNNNATC 1 cut(s) 351
BseLI CCNNNNNNNGG 3 cut(s) 271, 772, 773
BseNI ACTGG 1 cut(s) 626
BseYI CCCAGC 1 cut(s) 481
BshFI GGCC 1 cut(s) 679
BshNI GGYRCC 1 cut(s) 260
BsiHKAI GWGCWC 1 cut(s) 370
BsiSI CCGG 3 cut(s) 257, 848, 864
BslFI GGGAC 1 cut(s) 487
BslI CCNNNNNNNGG 3 cut(s) 271, 772, 773
BsmFI GGGAC 1 cut(s) 487
BsmI GAATGC 1 cut(s) 389
BsnI GGCC 1 cut(s) 679
Bsp1286I GDGCHC 1 cut(s) 370
Bsp143I GATC 3 cut(s) 429, 748, 940
Bsp19I CCATGG 1 cut(s) 461
BspACI CCGC 2 cut(s) 272, 993
BspANI GGCC 1 cut(s) 679
BspLI GGNNCC 2 cut(s) 166, 262
BspPI GGATC 1 cut(s) 743
BspT107I GGYRCC 1 cut(s) 260
BsrI ACTGG 1 cut(s) 626
BssECI CCNNGG 2 cut(s) 186, 461
BssMI GATC 3 cut(s) 429, 748, 940
BssT1I CCWWGG 2 cut(s) 186, 461
Bst2UI CCWGG 2 cut(s) 522, 978
Bst4CI ACNGT 3 cut(s) 169, 238, 806
BstAPI GCANNNNNTGC 1 cut(s) 909
BstDEI CTNAG 1 cut(s) 323
BstDSI CCRYGG 1 cut(s) 461
BstF5I GGATG 3 cut(s) 101, 428, 432
BstKTI GATC 3 cut(s) 432, 751, 943
BstMBI GATC 3 cut(s) 429, 748, 940
BstMWI GCNNNNNNNGC 2 cut(s) 380, 909
BstNI CCWGG 2 cut(s) 522, 978
BstNSI RCATGY 2 cut(s) 200, 863
BstPAI GACNNNNGTC 1 cut(s) 463
BstSCI CCNGG 3 cut(s) 256, 520, 976
BstV2I GAAGAC 2 cut(s) 139, 779
BstXI CCANNNNNNTGG 1 cut(s) 96
BsuRI GGCC 1 cut(s) 679
BtgI CCRYGG 1 cut(s) 461
BtsCI GGATG 3 cut(s) 101, 428, 432
BtsIMutI CAGTG 2 cut(s) 45, 400
Cfr13I GGNCC 2 cut(s) 548, 974
Csp6I GTAC 3 cut(s) 261, 360, 560
CviAII CATG 5 cut(s) 197, 462, 477, 491, 860
CviQI GTAC 3 cut(s) 261, 360, 560
DdeI CTNAG 1 cut(s) 323
DpnI GATC 3 cut(s) 431, 750, 942
DpnII GATC 3 cut(s) 429, 748, 940
EaeI YGGCCR 1 cut(s) 677
Eco130I CCWWGG 2 cut(s) 186, 461
Eco32I GATATC 1 cut(s) 7
Eco47I GGWCC 2 cut(s) 548, 974
EcoRII CCWGG 2 cut(s) 520, 976
EcoRV GATATC 1 cut(s) 7
EcoT14I CCWWGG 2 cut(s) 186, 461
ErhI CCWWGG 2 cut(s) 186, 461
FaeI CATG 5 cut(s) 200, 465, 480, 494, 863
FaqI GGGAC 1 cut(s) 487
FatI CATG 5 cut(s) 196, 461, 476, 490, 859
FauI CCCGC 1 cut(s) 265
FauNDI CATATG 1 cut(s) 66
FbaI TGATCA 2 cut(s) 429, 940
FokI GGATG 3 cut(s) 108, 435, 439
FspBI CTAG 1 cut(s) 701
GsaI CCCAGC 1 cut(s) 485
GsuI CTGGAG 1 cut(s) 999
HaeIII GGCC 1 cut(s) 679
HapII CCGG 3 cut(s) 257, 848, 864
Hin1II CATG 5 cut(s) 200, 465, 480, 494, 863
HindIII AAGCTT 1 cut(s) 372
HinfI GANTC 2 cut(s) 53, 101
HpaII CCGG 3 cut(s) 257, 848, 864
HphI GGTGA 2 cut(s) 410, 758
Hpy166II GTNNAC 2 cut(s) 560, 898
Hpy188I TCNGA 1 cut(s) 112
Hpy188III TCNNGA 5 cut(s) 79, 212, 602, 644, 824
Hpy8I GTNNAC 2 cut(s) 560, 898
HpyCH4III ACNGT 3 cut(s) 169, 238, 806
HpyCH4IV ACGT 1 cut(s) 906
HpyCH4V TGCA 1 cut(s) 125
HpyF10VI GCNNNNNNNGC 2 cut(s) 380, 909
HpyF3I CTNAG 1 cut(s) 323
HpySE526I ACGT 1 cut(s) 906
Hsp92II CATG 5 cut(s) 200, 465, 480, 494, 863
KpnI GGTACC 1 cut(s) 264
Ksp22I TGATCA 2 cut(s) 429, 940
Kzo9I GATC 3 cut(s) 429, 748, 940
LweI GCATC 1 cut(s) 391
MaeI CTAG 1 cut(s) 701
MaeII ACGT 1 cut(s) 906
MalI GATC 3 cut(s) 431, 750, 942
MboI GATC 3 cut(s) 429, 748, 940
MboII GAAGA 4 cut(s) 144, 572, 689, 779
MhlI GDGCHC 1 cut(s) 370
MlsI TGGCCA 1 cut(s) 679
MluCI AATT 7 cut(s) 119, 229, 298, 342, 406, 871, 922
MluNI TGGCCA 1 cut(s) 679
MmeI TCCRAC 3 cut(s) 400, 703, 868
MnlI CCTC 4 cut(s) 299, 573, 725, 974
Mox20I TGGCCA 1 cut(s) 679
MroXI GAANNNNTTC 1 cut(s) 739
MscI TGGCCA 1 cut(s) 679
MseI TTAA 7 cut(s) 179, 507, 693, 870, 921, 987, 1000
MslI CAYNNNNRTG 1 cut(s) 80
Msp20I TGGCCA 1 cut(s) 679
MspI CCGG 3 cut(s) 257, 848, 864
MspR9I CCNGG 3 cut(s) 258, 522, 978
Mva1269I GAATGC 1 cut(s) 389
MvaI CCWGG 2 cut(s) 522, 978
MwoI GCNNNNNNNGC 2 cut(s) 380, 909
NciI CCSGG 1 cut(s) 258
NcoI CCATGG 1 cut(s) 461
NdeI CATATG 1 cut(s) 66
NdeII GATC 3 cut(s) 429, 748, 940
NlaIII CATG 5 cut(s) 200, 465, 480, 494, 863
NlaIV GGNNCC 2 cut(s) 166, 262
NspI RCATGY 2 cut(s) 200, 863
PciI ACATGT 1 cut(s) 196
PctI GAATGC 1 cut(s) 389
PdmI GAANNNNTTC 1 cut(s) 739
PfeI GAWTC 2 cut(s) 53, 101
PfoI TCCNGGA 2 cut(s) 520, 976
PscI ACATGT 1 cut(s) 196
PshAI GACNNNNGTC 1 cut(s) 463
PsiI TTATAA 1 cut(s) 333
Psp6I CCWGG 2 cut(s) 520, 976
PspFI CCCAGC 1 cut(s) 481
PspGI CCWGG 2 cut(s) 520, 976
PspN4I GGNNCC 2 cut(s) 166, 262
PspPI GGNCC 2 cut(s) 548, 974
RsaI GTAC 3 cut(s) 262, 361, 561
RsaNI GTAC 3 cut(s) 261, 360, 560
RseI CAYNNNNRTG 1 cut(s) 80
SaqAI TTAA 7 cut(s) 179, 507, 693, 870, 921, 987, 1000
Sau3AI GATC 3 cut(s) 429, 748, 940
Sau96I GGNCC 2 cut(s) 548, 974
ScrFI CCNGG 3 cut(s) 258, 522, 978
SduI GDGCHC 1 cut(s) 370
SetI ASST 7 cut(s) 250, 376, 565, 748, 909, 951, 985
SfaNI GCATC 1 cut(s) 391
SinI GGWCC 2 cut(s) 548, 974
SmiMI CAYNNNNRTG 1 cut(s) 80
SmlI CTYRAG 2 cut(s) 369, 566
SmoI CTYRAG 2 cut(s) 369, 566
Sse9I AATT 7 cut(s) 119, 229, 298, 342, 406, 871, 922
SsiI CCGC 2 cut(s) 272, 993
SspMI CTAG 1 cut(s) 701
StyD4I CCNGG 3 cut(s) 256, 520, 976
StyI CCWWGG 2 cut(s) 186, 461
TaaI ACNGT 3 cut(s) 169, 238, 806
TaiI ACGT 1 cut(s) 909
TasI AATT 7 cut(s) 119, 229, 298, 342, 406, 871, 922
TatI WGTACW 1 cut(s) 359
TfiI GAWTC 2 cut(s) 53, 101
Tru1I TTAA 7 cut(s) 179, 507, 693, 870, 921, 987, 1000
Tru9I TTAA 7 cut(s) 179, 507, 693, 870, 921, 987, 1000
TscAI CASTG 2 cut(s) 45, 400
TspDTI ATGAA 5 cut(s) 83, 98, 293, 450, 870
TspRI CASTG 2 cut(s) 45, 400
VpaK11BI GGWCC 2 cut(s) 548, 974
XapI RAATTY 1 cut(s) 119
XceI RCATGY 2 cut(s) 200, 863
XmnI GAANNNNTTC 1 cut(s) 739
XspI CTAG 1 cut(s) 701
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.