MD10G1207400.v1.1

No description available

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr10
Physical Location & Seq
Reverse (-)
30706095 .. 30708110
2016 bp
Loading structure...
UTR
Exon/CDS
Intron
MD10G1207400.v1.1.491

Sequence Viewer

Length: 270 bp
ATGAATATATATTACAGGACAGTGCCAATCCTAGTTTTCTCCCCTTCTTTCGATATGGGGCTCTGTGCAAGTGTCCCGTCTCTTTTCCCCTTTTTCTCTATTGGCCGTCGTCCCCTTTTATTTTTTGGACTTGGATTGTCTGCCCTCCCATTTCGATGCCCTCCTCGTGCCCTTCTGTTTTGTGTGGTCACGGTTAAGCCACGTCAACATTTTATATTGTTTTTTTATAAAAATAATAAAACAAAAAGAAATAGTAATATAAAATGTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

90

Amino Acids

10.27

Weight (kDa)

10.46

Isoelectric Point (pI)

66.89

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Orthologous Genes (Group: OG0017110)

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 228
AcoI YGGCCR 1 cut(s) 103
AjiI CACGTC 1 cut(s) 203
Alw26I GTCTC 1 cut(s) 84
AoxI GGCC 1 cut(s) 103
BaeGI GKGCMC 1 cut(s) 172
BanII GRGCYC 1 cut(s) 63
BauI CACGAG 1 cut(s) 165
BceAI ACGGC 1 cut(s) 90
BcoDI GTCTC 1 cut(s) 84
BfaI CTAG 1 cut(s) 32
BmgBI CACGTC 1 cut(s) 203
BmsI GCATC 1 cut(s) 146
BseRI GAGGAG 1 cut(s) 153
BseSI GKGCMC 1 cut(s) 172
BshFI GGCC 1 cut(s) 105
BslFI GGGAC 2 cut(s) 59, 96
BsmAI GTCTC 1 cut(s) 84
BsmBI CGTCTC 1 cut(s) 84
BsmFI GGGAC 2 cut(s) 59, 96
BsnI GGCC 1 cut(s) 105
Bsp1286I GDGCHC 2 cut(s) 63, 172
BspANI GGCC 1 cut(s) 105
BssSI CACGAG 1 cut(s) 165
Bst2BI CACGAG 1 cut(s) 165
Bst4CI ACNGT 2 cut(s) 22, 193
BstMAI GTCTC 1 cut(s) 84
BstSLI GKGCMC 1 cut(s) 172
BsuRI GGCC 1 cut(s) 105
BtrI CACGTC 1 cut(s) 203
BtsIMutI CAGTG 1 cut(s) 27
CviJI RGCY 3 cut(s) 61, 105, 199
CviKI_1 RGCY 3 cut(s) 61, 105, 199
EaeI YGGCCR 1 cut(s) 103
Eco24I GRGCYC 1 cut(s) 63
EcoT38I GRGCYC 1 cut(s) 63
Esp3I CGTCTC 1 cut(s) 84
FaiI YATR 6 cut(s) 8, 10, 56, 215, 228, 260
FaqI GGGAC 2 cut(s) 59, 96
FriOI GRGCYC 1 cut(s) 63
FspBI CTAG 1 cut(s) 32
HaeIII GGCC 1 cut(s) 105
HincII GTYRAC 1 cut(s) 206
HindII GTYRAC 1 cut(s) 206
Hpy166II GTNNAC 1 cut(s) 206
Hpy8I GTNNAC 1 cut(s) 206
Hpy99I CGWCG 1 cut(s) 111
HpyAV CCTTC 2 cut(s) 54, 182
HpyCH4III ACNGT 2 cut(s) 22, 193
HpyCH4IV ACGT 1 cut(s) 202
HpyCH4V TGCA 1 cut(s) 68
HpySE526I ACGT 1 cut(s) 202
LweI GCATC 1 cut(s) 146
MaeI CTAG 1 cut(s) 32
MaeII ACGT 1 cut(s) 202
MaeIII GTNAC 1 cut(s) 187
MhlI GDGCHC 2 cut(s) 63, 172
MnlI CCTC 3 cut(s) 155, 171, 174
MseI TTAA 1 cut(s) 195
MslI CAYNNNNRTG 1 cut(s) 154
NmuCI GTSAC 1 cut(s) 187
PsiI TTATAA 1 cut(s) 228
RseI CAYNNNNRTG 1 cut(s) 154
SaqAI TTAA 1 cut(s) 195
SduI GDGCHC 2 cut(s) 63, 172
SetI ASST 1 cut(s) 205
SfaNI GCATC 1 cut(s) 146
SgeI CNNG 9 cut(s) 28, 44, 81, 88, 143, 177, 179, 202, 213
SmiMI CAYNNNNRTG 1 cut(s) 154
SspMI CTAG 1 cut(s) 32
TaaI ACNGT 2 cut(s) 22, 193
TaiI ACGT 1 cut(s) 205
TaqI TCGA 2 cut(s) 51, 154
Tru1I TTAA 1 cut(s) 195
Tru9I TTAA 1 cut(s) 195
TscAI CASTG 1 cut(s) 27
TseFI GTSAC 1 cut(s) 187
Tsp45I GTSAC 1 cut(s) 187
TspDTI ATGAA 1 cut(s) 17
TspRI CASTG 1 cut(s) 27
XspI CTAG 1 cut(s) 32
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.