AT5G11660

Encoded by

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
5
OG0017110
Physical Location & Seq
Forward (+)
3748880 .. 3750317
1438 bp
Loading structure...
UTR
Exon/CDS
Intron
AT5G11660.1

Sequence Viewer

Length: 927 bp
ATGAAACCATCTTTTTCGATCTCTAAACCAAAAAGTCAAGTTAAAAATAAAATTGAGGGTAAAAAGATCATCGAATGTCCAAATGGAACGGTTCCTATATTAAGAAATACAAAAGAATATGTCGCAAGAGCCCAATATTGGGAGAAAAAGCATTTCAACCCGCATACCGTCGGAAGTCATGGGACACATTATGCTGGAGTTAAATCACAAGGTGATGGTCCTTATCATGGGTTGGCAGCTTATATGAGTGTGCATGATTTGAATATTAGTAGGGACCAAACTTCATATGCTAGCATTTTTGTTGGTAGTGGAGACAACAAGAAAATTAATTTTATTCAAACCGGTTGGATGGTGAATCCAAGTTTATTTGGTGATGGACGTACATGGAGTTTTGGGGTTTGGAAGGGTGCCAATGGAACTGGTTGTTATAATACAATATGTCCGGGTTTTGTTCAAGTGTCAAAAACTGATCTTTTAAGTGCACCTTTTCCATATCCACACAAAGGACAAGAAAGAGCTGTTTATGCTAGCATTGTACAGGAAAAAGATATAGGAAATTGGTGGGTAACCGATGTAAGATATGACAGACCAGATGTGCATATTGGTTATTGGCCAAAAGAACTATTTGATCTTATAGGTAATAGTGTAGACATGGTTGGAGTTGCAGGAGCAGTCCAGGCTTCTCCTTCTGGTATAAGTCCACCAATGGGTAATGGTCAACTACCAAGTGAAGATGAAAATAAGTCTGCACACGTTAAAGGCGTCCAAATAGTACATTCTGATTTTAAATATAGTAAGAAACTGAAGTTAGAAAAACTATTGGACGACAACAAATGTTATGGCTTAAAAGATGGAAAGAAGCAGTTTTTTAAAGAATCCAATTTGTTCACATATGGTGGACCTGGGGGTAACTCTTGTGGAATCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Neprosin Neprosin_AP

Protein Analysis

308

Amino Acids

33.97

Weight (kDa)

9.12

Isoelectric Point (pI)

30.61

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Neprosin PF03080 92 - 301 1.1e-57 Neprosin
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0017110)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G04937 AT5G05030 AT5G11660 AT5G25410 AT5G25415 AT5G36680 AT5G36770 AT5G60380
fragaria_vesca FvH4_2g09090 FvH4_4g25910
malus_domestica MD10G1076000.v1.1 MD10G1207400.v1.1
pyrus_communis pycom02g18760

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 429
AccB1I GGYRCC 1 cut(s) 407
AccI GTMKAC 1 cut(s) 648
AciI CCGC 1 cut(s) 161
AcoI YGGCCR 1 cut(s) 611
AcuI CTGAAG 1 cut(s) 824
AcyI GRCGYC 1 cut(s) 762
AdeI CACNNNGTG 1 cut(s) 212
AfaI GTAC 3 cut(s) 382, 537, 774
AfiI CCNNNNNNNGG 5 cut(s) 138, 139, 227, 503, 707
AflIII ACRYGT 1 cut(s) 751
AgeI ACCGGT 1 cut(s) 341
AgsI TTSAA 4 cut(s) 157, 262, 338, 455
AjnI CCWGG 2 cut(s) 675, 901
AluBI AGCT 2 cut(s) 239, 518
AluI AGCT 2 cut(s) 239, 518
Alw21I GWGCWC 1 cut(s) 484
Alw26I GTCTC 1 cut(s) 306
Alw44I GTGCAC 1 cut(s) 480
AoxI GGCC 1 cut(s) 611
ApaLI GTGCAC 1 cut(s) 480
ApeKI GCWGC 1 cut(s) 236
AseI ATTAAT 1 cut(s) 327
AsiGI ACCGGT 1 cut(s) 341
AspS9I GGNCC 3 cut(s) 218, 274, 899
AsuC2I CCSGG 1 cut(s) 444
AsuHPI GGTGA 3 cut(s) 224, 364, 383
AsuNHI GCTAGC 2 cut(s) 290, 527
AvaII GGWCC 3 cut(s) 218, 274, 899
BaeGI GKGCMC 1 cut(s) 484
BalI TGGCCA 1 cut(s) 613
BanI GGYRCC 1 cut(s) 407
BanII GRGCYC 1 cut(s) 133
Bbv12I GWGCWC 1 cut(s) 484
BbvI GCAGC 1 cut(s) 248
BccI CCATC 5 cut(s) 16, 209, 343, 368, 845
BciT130I CCWGG 2 cut(s) 677, 903
BcnI CCSGG 1 cut(s) 444
BcoDI GTCTC 1 cut(s) 306
BfaI CTAG 2 cut(s) 291, 528
BisI GCNGC 1 cut(s) 237
BlsI GCNGC 1 cut(s) 238
Bme1390I CCNGG 3 cut(s) 444, 677, 903
Bme18I GGWCC 3 cut(s) 218, 274, 899
BmgT120I GGNCC 3 cut(s) 218, 274, 899
BmiI GGNNCC 3 cut(s) 93, 275, 409
BmrFI CCNGG 3 cut(s) 444, 677, 903
BmtI GCTAGC 2 cut(s) 294, 531
BpmI CTGGAG 1 cut(s) 216
BpuMI CCSGG 1 cut(s) 444
BsaHI GRCGYC 1 cut(s) 762
BsaJI CCNNGG 1 cut(s) 902
BsaWI WCCGGW 1 cut(s) 341
Bsc4I CCNNNNNNNGG 5 cut(s) 138, 139, 227, 503, 707
Bse118I RCCGGY 1 cut(s) 341
Bse1I ACTGG 1 cut(s) 424
BseBI CCWGG 2 cut(s) 677, 903
BseDI CCNNGG 1 cut(s) 902
BseGI GGATG 1 cut(s) 354
BseLI CCNNNNNNNGG 5 cut(s) 138, 139, 227, 503, 707
BseNI ACTGG 1 cut(s) 424
BseSI GKGCMC 1 cut(s) 484
BseXI GCAGC 1 cut(s) 248
BsgI GTGCAG 1 cut(s) 732
BshFI GGCC 1 cut(s) 613
BshNI GGYRCC 1 cut(s) 407
BshTI ACCGGT 1 cut(s) 341
BsiHKAI GWGCWC 1 cut(s) 484
BsiSI CCGG 2 cut(s) 342, 443
BslFI GGGAC 2 cut(s) 196, 287
BslI CCNNNNNNNGG 5 cut(s) 138, 139, 227, 503, 707
BsmAI GTCTC 1 cut(s) 306
BsmFI GGGAC 2 cut(s) 196, 287
BsnI GGCC 1 cut(s) 613
Bsp1286I GDGCHC 2 cut(s) 133, 484
Bsp1407I TGTACA 1 cut(s) 535
Bsp143I GATC 4 cut(s) 18, 66, 469, 628
BspACI CCGC 1 cut(s) 161
BspANI GGCC 1 cut(s) 613
BspLI GGNNCC 3 cut(s) 93, 275, 409
BspOI GCTAGC 2 cut(s) 294, 531
BspT107I GGYRCC 1 cut(s) 407
BsrFI RCCGGY 1 cut(s) 341
BsrGI TGTACA 1 cut(s) 535
BsrI ACTGG 1 cut(s) 424
BssAI RCCGGY 1 cut(s) 341
BssECI CCNNGG 1 cut(s) 902
BssMI GATC 4 cut(s) 18, 66, 469, 628
BssNI GRCGYC 1 cut(s) 762
Bst2UI CCWGG 2 cut(s) 677, 903
Bst4CI ACNGT 2 cut(s) 91, 169
BstACI GRCGYC 1 cut(s) 762
BstAUI TGTACA 1 cut(s) 535
BstC8I GCNNGC 2 cut(s) 292, 529
BstEII GGTNACC 1 cut(s) 565
BstF5I GGATG 1 cut(s) 354
BstKTI GATC 4 cut(s) 21, 69, 472, 631
BstMAI GTCTC 1 cut(s) 306
BstMBI GATC 4 cut(s) 18, 66, 469, 628
BstMWI GCNNNNNNNGC 2 cut(s) 524, 677
BstNI CCWGG 2 cut(s) 677, 903
BstPI GGTNACC 1 cut(s) 565
BstSCI CCNGG 3 cut(s) 442, 675, 901
BstSLI GKGCMC 1 cut(s) 484
BstV1I GCAGC 1 cut(s) 248
BsuRI GGCC 1 cut(s) 613
BtsCI GGATG 1 cut(s) 354
Cac8I GCNNGC 2 cut(s) 292, 529
Cfr10I RCCGGY 1 cut(s) 341
Cfr13I GGNCC 3 cut(s) 218, 274, 899
CseI GACGC 1 cut(s) 751
Csp6I GTAC 3 cut(s) 381, 536, 773
CspAI ACCGGT 1 cut(s) 341
CviAII CATG 5 cut(s) 179, 227, 254, 384, 652
CviJI RGCY 6 cut(s) 131, 239, 518, 613, 680, 843
CviKI_1 RGCY 6 cut(s) 131, 239, 518, 613, 680, 843
CviQI GTAC 3 cut(s) 381, 536, 773
DpnI GATC 4 cut(s) 20, 68, 471, 630
DpnII GATC 4 cut(s) 18, 66, 469, 628
DraI TTTAAA 2 cut(s) 787, 871
DraIII CACNNNGTG 1 cut(s) 212
EaeI YGGCCR 1 cut(s) 611
Eco24I GRGCYC 1 cut(s) 133
Eco47I GGWCC 3 cut(s) 218, 274, 899
Eco57I CTGAAG 1 cut(s) 824
Eco91I GGTNACC 1 cut(s) 565
EcoO65I GGTNACC 1 cut(s) 565
EcoRII CCWGG 2 cut(s) 675, 901
EcoT38I GRGCYC 1 cut(s) 133
FaeI CATG 5 cut(s) 182, 230, 257, 387, 655
FalI AAGNNNNNCTT 2 cut(s) 469, 501
FaqI GGGAC 2 cut(s) 196, 287
FatI CATG 5 cut(s) 178, 226, 253, 383, 651
FauI CCCGC 1 cut(s) 168
FauNDI CATATG 2 cut(s) 286, 892
FblI GTMKAC 1 cut(s) 648
Fnu4HI GCNGC 1 cut(s) 237
FokI GGATG 1 cut(s) 361
FriOI GRGCYC 1 cut(s) 133
Fsp4HI GCNGC 1 cut(s) 237
FspBI CTAG 2 cut(s) 291, 528
GluI GCNGC 1 cut(s) 237
GsuI CTGGAG 1 cut(s) 216
HaeIII GGCC 1 cut(s) 613
HapII CCGG 2 cut(s) 342, 443
HgaI GACGC 1 cut(s) 751
Hin1I GRCGYC 1 cut(s) 762
Hin1II CATG 5 cut(s) 182, 230, 257, 387, 655
HincII GTYRAC 1 cut(s) 719
HindII GTYRAC 1 cut(s) 719
HinfI GANTC 3 cut(s) 355, 875, 921
HpaII CCGG 2 cut(s) 342, 443
HphI GGTGA 3 cut(s) 224, 364, 383
Hpy166II GTNNAC 6 cut(s) 482, 649, 701, 719, 888, 899
Hpy188I TCNGA 2 cut(s) 173, 781
Hpy8I GTNNAC 6 cut(s) 482, 649, 701, 719, 888, 899
Hpy99I CGWCG 1 cut(s) 173
HpyAV CCTTC 2 cut(s) 397, 696
HpyCH4III ACNGT 2 cut(s) 91, 169
HpyCH4IV ACGT 2 cut(s) 379, 753
HpyCH4V TGCA 5 cut(s) 253, 482, 598, 665, 749
HpyF10VI GCNNNNNNNGC 2 cut(s) 524, 677
HpySE526I ACGT 2 cut(s) 379, 753
Hsp92I GRCGYC 1 cut(s) 762
Hsp92II CATG 5 cut(s) 182, 230, 257, 387, 655
Kzo9I GATC 4 cut(s) 18, 66, 469, 628
LmnI GCTCC 1 cut(s) 668
Lsp1109I GCAGC 1 cut(s) 248
MaeI CTAG 2 cut(s) 291, 528
MaeII ACGT 2 cut(s) 379, 753
MaeIII GTNAC 2 cut(s) 565, 908
MalI GATC 4 cut(s) 20, 68, 471, 630
MboI GATC 4 cut(s) 18, 66, 469, 628
MboII GAAGA 1 cut(s) 743
MhlI GDGCHC 2 cut(s) 133, 484
MlsI TGGCCA 1 cut(s) 613
MluCI AATT 5 cut(s) 51, 324, 328, 556, 880
MluNI TGGCCA 1 cut(s) 613
MmeI TCCRAC 3 cut(s) 151, 326, 637
MnlI CCTC 1 cut(s) 49
Mox20I TGGCCA 1 cut(s) 613
MscI TGGCCA 1 cut(s) 613
MseI TTAA 9 cut(s) 42, 101, 201, 327, 476, 756, 786, 845, 870
Msp20I TGGCCA 1 cut(s) 613
MspI CCGG 2 cut(s) 342, 443
MspR9I CCNGG 3 cut(s) 444, 677, 903
MvaI CCWGG 2 cut(s) 677, 903
MwoI GCNNNNNNNGC 2 cut(s) 524, 677
NciI CCSGG 1 cut(s) 444
NdeI CATATG 2 cut(s) 286, 892
NdeII GATC 4 cut(s) 18, 66, 469, 628
NheI GCTAGC 2 cut(s) 290, 527
NlaIII CATG 5 cut(s) 182, 230, 257, 387, 655
NlaIV GGNNCC 3 cut(s) 93, 275, 409
PcsI WCGNNNNNNNCGW 1 cut(s) 759
PfeI GAWTC 3 cut(s) 355, 875, 921
PinAI ACCGGT 1 cut(s) 341
PkrI GCNGC 1 cut(s) 238
PshBI ATTAAT 1 cut(s) 327
PsiI TTATAA 1 cut(s) 429
Psp6I CCWGG 2 cut(s) 675, 901
PspEI GGTNACC 1 cut(s) 565
PspGI CCWGG 2 cut(s) 675, 901
PspN4I GGNNCC 3 cut(s) 93, 275, 409
PspPI GGNCC 3 cut(s) 218, 274, 899
RsaI GTAC 3 cut(s) 382, 537, 774
RsaNI GTAC 3 cut(s) 381, 536, 773
SaqAI TTAA 9 cut(s) 42, 101, 201, 327, 476, 756, 786, 845, 870
SatI GCNGC 1 cut(s) 237
Sau3AI GATC 4 cut(s) 18, 66, 469, 628
Sau96I GGNCC 3 cut(s) 218, 274, 899
ScrFI CCNGG 3 cut(s) 444, 677, 903
SduI GDGCHC 2 cut(s) 133, 484
SetI ASST 8 cut(s) 214, 241, 382, 487, 520, 640, 756, 904
SinI GGWCC 3 cut(s) 218, 274, 899
Sse9I AATT 5 cut(s) 51, 324, 328, 556, 880
SsiI CCGC 1 cut(s) 161
SspI AATATT 2 cut(s) 137, 265
SspMI CTAG 2 cut(s) 291, 528
StyD4I CCNGG 3 cut(s) 442, 675, 901
TaaI ACNGT 2 cut(s) 91, 169
TaiI ACGT 2 cut(s) 382, 756
TaqI TCGA 2 cut(s) 17, 72
TasI AATT 5 cut(s) 51, 324, 328, 556, 880
TatI WGTACW 2 cut(s) 535, 772
TfiI GAWTC 3 cut(s) 355, 875, 921
Tru1I TTAA 9 cut(s) 42, 101, 201, 327, 476, 756, 786, 845, 870
Tru9I TTAA 9 cut(s) 42, 101, 201, 327, 476, 756, 786, 845, 870
TseI GCWGC 1 cut(s) 236
TspDTI ATGAA 3 cut(s) 17, 273, 750
VneI GTGCAC 1 cut(s) 480
VpaK11BI GGWCC 3 cut(s) 218, 274, 899
VspI ATTAAT 1 cut(s) 327
XmiI GTMKAC 1 cut(s) 648
XspI CTAG 2 cut(s) 291, 528
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.