AT5G05030

BEST Arabidopsis thaliana protein match is Protein of

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
5
Physical Location & Seq
Reverse (-)
1484177 .. 1486065
1889 bp
Loading structure...
UTR
Exon/CDS
Intron
AT5G05030.1

Sequence Viewer

Length: 1092 bp
ATGGACTTTGTTTTTAAACTCGTCGGATTCCTTTTCATAGTTTTAATAGTTCAATCTAAAGGAAATGTAAAAGATTTGATGTCCGTAAAGTTAAATGAGAACACCATATATGATTGTGTGGATATATATAAACAACCGTCGTTAAGTCATCCACTACTTCAAAATCATAAAGTTCAGCTGGAACCATCTTTCTCCAAACCAAAAAATCAAGTTAAAGGTGAAAGTGAAAGAAAAAATATCATCGAGTGTCCTAATGGAACAGTTCCGATAATAAGAAATACAAAAAAATATGTTGCAAATGCTCAATATTGGACAGAAAAACACTTAAATCCGCTTACAATCGATAGTCATGGGACACATATTGCTGGAGTTAGAACAACAGATCAAGGTCCTTACCGTGGTGTGATAGCTTCGCTTAGTGTGCATGACTTGAATATTAGTAGAGATCAAGCTTCATATGCTAATATATATATTGGCAGTGGAATCTACGACAAAGTTAATTTTATCCAAACCGGCTGGATGATAAATCCAAGTTTATTTGGTGACGGACGTACATGGAGTTATGGGTTTTGGAAGGGAGCTAACGGAGCAGGTTGTTATAATACAATATGTCGTGGTTTTGTTCAAGTATCAAAAACAGATCATTTAAGTGGACCTTTACCTCAACTCCCCTCAGGAGGGGACAGAGATATTTCTGTTTCTATTCGACAGGACAAAGAGACAGGAAATTGGTGGACTACAGATATAAGAGGCAATGAATCAGAAGAATATATAGGCTATTGGCCAAAAGAACTATTTGATCTTATTAGTAAGAGTGCAAACATAGTTGGAGTTACAGGAACAGTCCAGGCTTCTCCTTCGGGTCAAAGCCCACCAATGGGTAATGGTCATTTACCAACTGACGATGAGGCAGGGTCGGCGCGTGTTGGAGAAGTTAAGTTTATAGATAATGATTTTGTGGTCAAGGGAAGTGACCAATATAAGTTAGAGAAACTTATTGATGATAGTAACAAATGTTATGGTCTAAAAGATGGAAAGAAGTTAATTTTGTTCAAATATGGTGGACCTGGAGGAAATTCTTGTGGGATCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

363

Amino Acids

40.08

Weight (kDa)

7.6

Isoelectric Point (pI)

26.99

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Neprosin_AP PF14365 34 - 104 4.8e-15 Neprosin activation peptide
Neprosin PF03080 149 - 356 2.4e-55 Neprosin
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Orthologous Genes (Group: OG0017110)

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 600
Acc36I ACCTGC 1 cut(s) 581
AccII CGCG 1 cut(s) 922
AciI CCGC 1 cut(s) 332
AcoI YGGCCR 1 cut(s) 782
AcsI RAATTY 1 cut(s) 1075
AfaI GTAC 1 cut(s) 553
AfiI CCNNNNNNNGG 5 cut(s) 398, 677, 678, 877, 878
AgsI TTSAA 5 cut(s) 53, 161, 433, 626, 1054
AjnI CCWGG 2 cut(s) 846, 1066
AluBI AGCT 4 cut(s) 178, 410, 452, 581
AluI AGCT 4 cut(s) 178, 410, 452, 581
Alw26I GTCTC 1 cut(s) 713
AoxI GGCC 1 cut(s) 782
ApoI RAATTY 1 cut(s) 1075
AspLEI GCGC 1 cut(s) 922
AspS9I GGNCC 3 cut(s) 389, 653, 1064
AsuHPI GGTGA 2 cut(s) 230, 554
AvaII GGWCC 3 cut(s) 389, 653, 1064
AxyI CCTNAGG 1 cut(s) 673
BalI TGGCCA 1 cut(s) 784
BccI CCATC 2 cut(s) 193, 1025
BciT130I CCWGG 2 cut(s) 848, 1068
BcoDI GTCTC 1 cut(s) 713
BfmI CTRYAG 1 cut(s) 738
BfuAI ACCTGC 1 cut(s) 581
Bme1390I CCNGG 2 cut(s) 848, 1068
Bme18I GGWCC 3 cut(s) 389, 653, 1064
BmgT120I GGNCC 3 cut(s) 389, 653, 1064
BmiI GGNNCC 1 cut(s) 183
BmrFI CCNGG 2 cut(s) 848, 1068
BpmI CTGGAG 2 cut(s) 387, 1089
Bsa29I ATCGAT 1 cut(s) 342
BsaJI CCNNGG 1 cut(s) 397
BsaXI ACNNNNNCTCC 2 cut(s) 651, 681
Bsc4I CCNNNNNNNGG 5 cut(s) 398, 677, 678, 877, 878
Bse118I RCCGGY 1 cut(s) 512
Bse21I CCTNAGG 1 cut(s) 673
Bse3DI GCAATG 1 cut(s) 760
BseBI CCWGG 2 cut(s) 848, 1068
BseCI ATCGAT 1 cut(s) 342
BseDI CCNNGG 1 cut(s) 397
BseGI GGATG 2 cut(s) 148, 525
BseLI CCNNNNNNNGG 5 cut(s) 398, 677, 678, 877, 878
BseMI GCAATG 1 cut(s) 760
BseMII CTCAG 1 cut(s) 687
Bsh1236I CGCG 1 cut(s) 922
BshFI GGCC 1 cut(s) 784
BshVI ATCGAT 1 cut(s) 342
BsiSI CCGG 1 cut(s) 513
BslFI GGGAC 2 cut(s) 367, 695
BslI CCNNNNNNNGG 5 cut(s) 398, 677, 678, 877, 878
BsmAI GTCTC 1 cut(s) 713
BsmFI GGGAC 2 cut(s) 367, 695
BsnI GGCC 1 cut(s) 784
Bsp143I GATC 5 cut(s) 382, 445, 640, 799, 1086
BspACI CCGC 1 cut(s) 332
BspANI GGCC 1 cut(s) 784
BspCNI CTCAG 1 cut(s) 686
BspDI ATCGAT 1 cut(s) 342
BspFNI CGCG 1 cut(s) 922
BspLI GGNNCC 1 cut(s) 183
BspMI ACCTGC 1 cut(s) 581
BsrDI GCAATG 1 cut(s) 760
BsrFI RCCGGY 1 cut(s) 512
BssAI RCCGGY 1 cut(s) 512
BssECI CCNNGG 1 cut(s) 397
BssMI GATC 5 cut(s) 382, 445, 640, 799, 1086
Bst2UI CCWGG 2 cut(s) 848, 1068
Bst4CI ACNGT 4 cut(s) 138, 262, 398, 844
BstDEI CTNAG 2 cut(s) 416, 673
BstDSI CCRYGG 1 cut(s) 397
BstF5I GGATG 2 cut(s) 148, 525
BstFNI CGCG 1 cut(s) 922
BstHHI GCGC 1 cut(s) 922
BstKTI GATC 5 cut(s) 385, 448, 643, 802, 1089
BstMAI GTCTC 1 cut(s) 713
BstMBI GATC 5 cut(s) 382, 445, 640, 799, 1086
BstMWI GCNNNNNNNGC 4 cut(s) 421, 458, 587, 917
BstNI CCWGG 2 cut(s) 848, 1068
BstSCI CCNGG 2 cut(s) 846, 1066
BstSFI CTRYAG 1 cut(s) 738
BstUI CGCG 1 cut(s) 922
BstX2I RGATCY 1 cut(s) 1086
BstYI RGATCY 1 cut(s) 1086
Bsu15I ATCGAT 1 cut(s) 342
Bsu36I CCTNAGG 1 cut(s) 673
BsuRI GGCC 1 cut(s) 784
BsuTUI ATCGAT 1 cut(s) 342
BtgI CCRYGG 1 cut(s) 397
BtsCI GGATG 2 cut(s) 148, 525
BtsI GCAGTG 1 cut(s) 484
BtsIMutI CAGTG 1 cut(s) 484
BveI ACCTGC 1 cut(s) 581
CfoI GCGC 1 cut(s) 922
Cfr10I RCCGGY 1 cut(s) 512
Cfr13I GGNCC 3 cut(s) 389, 653, 1064
ClaI ATCGAT 1 cut(s) 342
Csp6I GTAC 1 cut(s) 552
CspCI CAANNNNNGTGG 2 cut(s) 1042, 1077
CviAII CATG 3 cut(s) 350, 425, 555
CviJI RGCY 9 cut(s) 178, 410, 452, 516, 581, 777, 784, 851, 870
CviKI_1 RGCY 9 cut(s) 178, 410, 452, 516, 581, 777, 784, 851, 870
CviQI GTAC 1 cut(s) 552
DdeI CTNAG 2 cut(s) 416, 673
DpnI GATC 5 cut(s) 384, 447, 642, 801, 1088
DpnII GATC 5 cut(s) 382, 445, 640, 799, 1086
DraI TTTAAA 1 cut(s) 16
EaeI YGGCCR 1 cut(s) 782
Eco47I GGWCC 3 cut(s) 389, 653, 1064
Eco81I CCTNAGG 1 cut(s) 673
EcoO109I RGGNCCY 1 cut(s) 389
EcoRII CCWGG 2 cut(s) 846, 1066
FaeI CATG 3 cut(s) 353, 428, 558
FalI AAGNNNNNCTT 2 cut(s) 640, 672
FaqI GGGAC 2 cut(s) 367, 695
FatI CATG 3 cut(s) 349, 424, 554
FauNDI CATATG 1 cut(s) 457
FokI GGATG 2 cut(s) 135, 532
GlaI GCGC 1 cut(s) 921
GsuI CTGGAG 2 cut(s) 387, 1089
HaeIII GGCC 1 cut(s) 784
HapII CCGG 1 cut(s) 513
HhaI GCGC 1 cut(s) 922
Hin1II CATG 3 cut(s) 353, 428, 558
Hin6I GCGC 1 cut(s) 920
HinP1I GCGC 1 cut(s) 920
HindIII AAGCTT 1 cut(s) 450
HinfI GANTC 3 cut(s) 27, 483, 758
HpaII CCGG 1 cut(s) 513
HphI GGTGA 2 cut(s) 230, 554
Hpy166II GTNNAC 3 cut(s) 653, 735, 1064
Hpy188I TCNGA 3 cut(s) 26, 267, 763
Hpy188III TCNNGA 1 cut(s) 675
Hpy8I GTNNAC 3 cut(s) 653, 735, 1064
Hpy99I CGWCG 2 cut(s) 26, 142
HpyAV CCTTC 2 cut(s) 568, 867
HpyCH4III ACNGT 4 cut(s) 138, 262, 398, 844
HpyCH4IV ACGT 1 cut(s) 550
HpyCH4V TGCA 3 cut(s) 296, 424, 818
HpyF10VI GCNNNNNNNGC 4 cut(s) 421, 458, 587, 917
HpyF3I CTNAG 2 cut(s) 416, 673
HpySE526I ACGT 1 cut(s) 550
Hsp92II CATG 3 cut(s) 353, 428, 558
HspAI GCGC 1 cut(s) 920
Kzo9I GATC 5 cut(s) 382, 445, 640, 799, 1086
LmnI GCTCC 2 cut(s) 578, 587
MaeII ACGT 1 cut(s) 550
MaeIII GTNAC 4 cut(s) 542, 832, 971, 1007
MalI GATC 5 cut(s) 384, 447, 642, 801, 1088
MboI GATC 5 cut(s) 382, 445, 640, 799, 1086
MboII GAAGA 1 cut(s) 776
MflI RGATCY 1 cut(s) 1086
MlsI TGGCCA 1 cut(s) 784
MluCI AATT 4 cut(s) 499, 727, 1044, 1075
MluNI TGGCCA 1 cut(s) 784
MmeI TCCRAC 3 cut(s) 4, 808, 907
MnlI CCTC 6 cut(s) 671, 672, 682, 743, 901, 1064
Mox20I TGGCCA 1 cut(s) 784
MscI TGGCCA 1 cut(s) 784
MslI CAYNNNNRTG 1 cut(s) 648
Msp20I TGGCCA 1 cut(s) 784
MspA1I CMGCKG 1 cut(s) 178
MspI CCGG 1 cut(s) 513
MspR9I CCNGG 2 cut(s) 848, 1068
MvaI CCWGG 2 cut(s) 848, 1068
MvnI CGCG 1 cut(s) 922
MwoI GCNNNNNNNGC 4 cut(s) 421, 458, 587, 917
NdeI CATATG 1 cut(s) 457
NdeII GATC 5 cut(s) 382, 445, 640, 799, 1086
NlaIII CATG 3 cut(s) 353, 428, 558
NlaIV GGNNCC 1 cut(s) 183
NmuCI GTSAC 2 cut(s) 542, 971
PfeI GAWTC 3 cut(s) 27, 483, 758
PpuMI RGGWCCY 1 cut(s) 389
PsiI TTATAA 1 cut(s) 600
Psp5II RGGWCCY 1 cut(s) 389
Psp6I CCWGG 2 cut(s) 846, 1066
PspGI CCWGG 2 cut(s) 846, 1066
PspN4I GGNNCC 1 cut(s) 183
PspPI GGNCC 3 cut(s) 389, 653, 1064
PspPPI RGGWCCY 1 cut(s) 389
PsuI RGATCY 1 cut(s) 1086
PvuII CAGCTG 1 cut(s) 178
RsaI GTAC 1 cut(s) 553
RsaNI GTAC 1 cut(s) 552
RseI CAYNNNNRTG 1 cut(s) 648
Sau3AI GATC 5 cut(s) 382, 445, 640, 799, 1086
Sau96I GGNCC 3 cut(s) 389, 653, 1064
ScrFI CCNGG 2 cut(s) 848, 1068
SfcI CTRYAG 1 cut(s) 738
SinI GGWCC 3 cut(s) 389, 653, 1064
SmiMI CAYNNNNRTG 1 cut(s) 648
Sse9I AATT 4 cut(s) 499, 727, 1044, 1075
SsiI CCGC 1 cut(s) 332
SspI AATATT 2 cut(s) 308, 436
StyD4I CCNGG 2 cut(s) 846, 1066
TaaI ACNGT 4 cut(s) 138, 262, 398, 844
TaiI ACGT 1 cut(s) 553
TaqI TCGA 3 cut(s) 243, 342, 706
TasI AATT 4 cut(s) 499, 727, 1044, 1075
TfiI GAWTC 3 cut(s) 27, 483, 758
TscAI CASTG 1 cut(s) 484
TseFI GTSAC 2 cut(s) 542, 971
Tsp45I GTSAC 2 cut(s) 542, 971
TspDTI ATGAA 3 cut(s) 25, 444, 771
TspGWI ACGGA 3 cut(s) 73, 561, 600
TspRI CASTG 1 cut(s) 484
VpaK11BI GGWCC 3 cut(s) 389, 653, 1064
XapI RAATTY 1 cut(s) 1075
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.