AT5G25415

BEST Arabidopsis thaliana protein match is Protein of

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
5
OG0017110
Physical Location & Seq
Forward (+)
8834206 .. 8837248
3043 bp
Loading structure...
UTR
Exon/CDS
Intron
AT5G25415.1

Sequence Viewer

Length: 1005 bp
ATGCATGAACCAGAGACCAGCAAACCTTACTTGATATTTAGCTCCGACAATCTTGAAGCTATGATTTCCTCGGTGTTGTCGAACGGGGATAACAATAAGAATGTATTATTTACCTTTAGAAAAACCAAAGGATCCCTAGTTCGTTCTGATCAAACGTTGCCTCTCAGATCCTTCAAGTTAAGTGAAAATGCTACATACGATTGTCTAGATATTTTTAAGCAACCAGGACTTAATCATCCCTCGCTTCAAAACCACACAATCCAGATTGCTGGAGTAAGGTCACGTGCTGGTCCATATCATGGTGTAGAAGCTTGGTTTAATGGATATAAGCTAAACGTTGGACGATACCAGATTTCATATACCCAAATATTTATAGGCAGTCGACTGAATAACCAAGACAATTTTATCCAAGCGGGTTATATTATTAATCCAGGTTTCTTTGGCACCGGACAACTTTGGACGTATGGATTTTGGAAGGGTAAAGATGGAAAAGGATGTTACAATACAGCATGTGATGGGTTTATTCAGGTTTCGAGAAAAATTCCCATAGTCCAACCCATAGACCTTAAGCCAGGAGTCCCTGACTGGTCGCGTTGGTCCATCCATCAGGATAAAGGAACTGGAAATTGGTGGCTTACACAAATCTTACAAAATGCACCTAACGAAGATATTGGATATTGGCCAAAAGAGTTATTTAATCTTATTAATAATGGTGCTACTACGGTTGGAGTTGGAGGTGCAGTACAAGCTTCTGGTTCAGGTTCAAGTCCCCCGATGGGTAATGGTAATTTTCCAGTTGGAGGCCGCGCAGATTCAGCAATATTTACAAATATTGAAGTTTTGGATTCCAACTATAACCAACGTAAAATGAATTCTTTTCCTACTGAAATTATGGTAGATAGTCCAAAATGCTATGGGTTAAGAATTGGTAAGGTGAAACTATTTCATCGAACTCGACTCGGTTTCTTTTTCAATTATGGTGGTCCGGGCGGAAACTCTTGTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

334

Amino Acids

37.08

Weight (kDa)

9.17

Isoelectric Point (pI)

34.22

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Neprosin PF03080 116 - 329 1.1e-54 Neprosin
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0017110)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G04937 AT5G05030 AT5G11660 AT5G25410 AT5G25415 AT5G36680 AT5G36770 AT5G60380
fragaria_vesca FvH4_2g09090 FvH4_4g25910
malus_domestica MD10G1076000.v1.1 MD10G1207400.v1.1
pyrus_communis pycom02g18760

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 443
AccB7I CCANNNNNTGG 1 cut(s) 299
AccI GTMKAC 1 cut(s) 382
AccII CGCG 2 cut(s) 592, 807
AciI CCGC 3 cut(s) 413, 805, 990
AclI AACGTT 2 cut(s) 155, 336
AclWI GGATC 3 cut(s) 126, 139, 162
AcoI YGGCCR 1 cut(s) 680
AcsI RAATTY 2 cut(s) 540, 871
AcvI CACGTG 1 cut(s) 284
AfaI GTAC 1 cut(s) 744
AfiI CCNNNNNNNGG 3 cut(s) 299, 776, 800
AflII CTTAAG 1 cut(s) 566
AgsI TTSAA 6 cut(s) 56, 175, 248, 765, 836, 973
AjnI CCWGG 3 cut(s) 223, 430, 571
AjuI GAANNNNNNNTTGG 2 cut(s) 610, 642
AloI GAACNNNNNNTCC 2 cut(s) 123, 155
AluBI AGCT 5 cut(s) 42, 59, 311, 331, 749
AluI AGCT 5 cut(s) 42, 59, 311, 331, 749
Alw26I GTCTC 1 cut(s) 8
AlwI GGATC 3 cut(s) 126, 139, 162
AoxI GGCC 2 cut(s) 680, 802
ApoI RAATTY 2 cut(s) 540, 871
AseI ATTAAT 2 cut(s) 426, 705
AspLEI GCGC 1 cut(s) 809
AspS9I GGNCC 3 cut(s) 290, 597, 983
AsuC2I CCSGG 1 cut(s) 987
AsuHPI GGTGA 1 cut(s) 946
AvaII GGWCC 3 cut(s) 290, 597, 983
BalI TGGCCA 1 cut(s) 682
BamHI GGATCC 1 cut(s) 131
BanI GGYRCC 1 cut(s) 443
BbrPI CACGTG 1 cut(s) 284
BccI CCATC 5 cut(s) 479, 509, 608, 612, 769
BciT130I CCWGG 3 cut(s) 225, 432, 573
BclI TGATCA 1 cut(s) 148
BcnI CCSGG 1 cut(s) 987
BcoDI GTCTC 1 cut(s) 8
BfaI CTAG 2 cut(s) 137, 206
BfrI CTTAAG 1 cut(s) 566
BisI GCNGC 1 cut(s) 805
BlsI GCNGC 1 cut(s) 806
Bme1390I CCNGG 4 cut(s) 225, 432, 573, 987
Bme18I GGWCC 3 cut(s) 290, 597, 983
BmgT120I GGNCC 3 cut(s) 290, 597, 983
BmiI GGNNCC 2 cut(s) 133, 445
BmrFI CCNGG 4 cut(s) 225, 432, 573, 987
BpmI CTGGAG 1 cut(s) 291
BpuMI CCSGG 1 cut(s) 987
BsaAI YACGTR 1 cut(s) 284
BsaI GGTCTC 1 cut(s) 8
BsaJI CCNNGG 1 cut(s) 69
BsaWI WCCGGW 1 cut(s) 446
BsaXI ACNNNNNCTCC 2 cut(s) 726, 756
Bsc4I CCNNNNNNNGG 3 cut(s) 299, 776, 800
Bse1I ACTGG 3 cut(s) 590, 625, 794
BseBI CCWGG 3 cut(s) 225, 432, 573
BseDI CCNNGG 1 cut(s) 69
BseGI GGATG 3 cut(s) 235, 500, 600
BseLI CCNNNNNNNGG 3 cut(s) 299, 776, 800
BseMII CTCAG 1 cut(s) 178
BseNI ACTGG 3 cut(s) 590, 625, 794
BsgI GTGCAG 1 cut(s) 759
Bsh1236I CGCG 2 cut(s) 592, 807
BshFI GGCC 2 cut(s) 682, 804
BshNI GGYRCC 1 cut(s) 443
BsiSI CCGG 2 cut(s) 447, 986
BslFI GGGAC 2 cut(s) 563, 753
BslI CCNNNNNNNGG 3 cut(s) 299, 776, 800
BsmAI GTCTC 1 cut(s) 8
BsmFI GGGAC 2 cut(s) 563, 753
BsnI GGCC 2 cut(s) 682, 804
Bso31I GGTCTC 1 cut(s) 8
Bsp143I GATC 3 cut(s) 131, 148, 167
BspACI CCGC 3 cut(s) 413, 805, 990
BspANI GGCC 2 cut(s) 682, 804
BspCNI CTCAG 1 cut(s) 177
BspFNI CGCG 2 cut(s) 592, 807
BspLI GGNNCC 2 cut(s) 133, 445
BspPI GGATC 3 cut(s) 126, 139, 162
BspT107I GGYRCC 1 cut(s) 443
BspTI CTTAAG 1 cut(s) 566
BspTNI GGTCTC 1 cut(s) 8
BsrI ACTGG 3 cut(s) 590, 625, 794
BssECI CCNNGG 1 cut(s) 69
BssMI GATC 3 cut(s) 131, 148, 167
Bst2UI CCWGG 3 cut(s) 225, 432, 573
Bst4CI ACNGT 1 cut(s) 724
BstAFI CTTAAG 1 cut(s) 566
BstBAI YACGTR 1 cut(s) 284
BstDEI CTNAG 1 cut(s) 164
BstF5I GGATG 3 cut(s) 235, 500, 600
BstFNI CGCG 2 cut(s) 592, 807
BstHHI GCGC 1 cut(s) 809
BstKTI GATC 3 cut(s) 134, 151, 170
BstMAI GTCTC 1 cut(s) 8
BstMBI GATC 3 cut(s) 131, 148, 167
BstMWI GCNNNNNNNGC 2 cut(s) 746, 815
BstNI CCWGG 3 cut(s) 225, 432, 573
BstNSI RCATGY 1 cut(s) 513
BstSCI CCNGG 4 cut(s) 223, 430, 571, 985
BstUI CGCG 2 cut(s) 592, 807
BstX2I RGATCY 2 cut(s) 131, 167
BstXI CCANNNNNNTGG 1 cut(s) 269
BstYI RGATCY 2 cut(s) 131, 167
BsuRI GGCC 2 cut(s) 682, 804
BtsCI GGATG 3 cut(s) 235, 500, 600
CfoI GCGC 1 cut(s) 809
Cfr13I GGNCC 3 cut(s) 290, 597, 983
Csp6I GTAC 1 cut(s) 743
CspCI CAANNNNNGTGG 2 cut(s) 961, 996
CviAII CATG 3 cut(s) 5, 299, 510
CviJI RGCY 9 cut(s) 42, 59, 311, 331, 571, 634, 682, 749, 804
CviKI_1 RGCY 9 cut(s) 42, 59, 311, 331, 571, 634, 682, 749, 804
CviQI GTAC 1 cut(s) 743
DdeI CTNAG 1 cut(s) 164
DpnI GATC 3 cut(s) 133, 150, 169
DpnII GATC 3 cut(s) 131, 148, 167
EaeI YGGCCR 1 cut(s) 680
EciI GGCGGA 1 cut(s) 1005
Eco31I GGTCTC 1 cut(s) 8
Eco47I GGWCC 3 cut(s) 290, 597, 983
Eco72I CACGTG 1 cut(s) 284
EcoRI GAATTC 1 cut(s) 871
EcoRII CCWGG 3 cut(s) 223, 430, 571
EcoT22I ATGCAT 1 cut(s) 6
FaeI CATG 3 cut(s) 8, 302, 513
FaqI GGGAC 2 cut(s) 563, 753
FatI CATG 3 cut(s) 4, 298, 509
FauI CCCGC 1 cut(s) 406
FbaI TGATCA 1 cut(s) 148
FblI GTMKAC 1 cut(s) 382
Fnu4HI GCNGC 1 cut(s) 805
FokI GGATG 3 cut(s) 222, 507, 587
Fsp4HI GCNGC 1 cut(s) 805
FspBI CTAG 2 cut(s) 137, 206
GlaI GCGC 1 cut(s) 808
GluI GCNGC 1 cut(s) 805
GsuI CTGGAG 1 cut(s) 291
HaeIII GGCC 2 cut(s) 682, 804
HapII CCGG 2 cut(s) 447, 986
HhaI GCGC 1 cut(s) 809
Hin1II CATG 3 cut(s) 8, 302, 513
Hin6I GCGC 1 cut(s) 807
HinP1I GCGC 1 cut(s) 807
HincII GTYRAC 1 cut(s) 383
HindII GTYRAC 1 cut(s) 383
HindIII AAGCTT 2 cut(s) 309, 747
HinfI GANTC 4 cut(s) 576, 812, 845, 957
HpaII CCGG 2 cut(s) 447, 986
HphI GGTGA 1 cut(s) 946
Hpy166II GTNNAC 1 cut(s) 383
Hpy188I TCNGA 3 cut(s) 46, 148, 167
Hpy188III TCNNGA 5 cut(s) 53, 206, 262, 534, 608
Hpy8I GTNNAC 1 cut(s) 383
HpyAV CCTTC 2 cut(s) 181, 469
HpyCH4III ACNGT 1 cut(s) 724
HpyCH4IV ACGT 5 cut(s) 155, 283, 336, 461, 862
HpyCH4V TGCA 3 cut(s) 4, 656, 740
HpyF10VI GCNNNNNNNGC 2 cut(s) 746, 815
HpyF3I CTNAG 1 cut(s) 164
HpySE526I ACGT 5 cut(s) 155, 283, 336, 461, 862
Hsp92II CATG 3 cut(s) 8, 302, 513
HspAI GCGC 1 cut(s) 807
Ksp22I TGATCA 1 cut(s) 148
Kzo9I GATC 3 cut(s) 131, 148, 167
LmnI GCTCC 1 cut(s) 47
MaeI CTAG 2 cut(s) 137, 206
MaeII ACGT 5 cut(s) 155, 283, 336, 461, 862
MaeIII GTNAC 2 cut(s) 279, 497
MalI GATC 3 cut(s) 133, 150, 169
MboI GATC 3 cut(s) 131, 148, 167
MboII GAAGA 1 cut(s) 677
MflI RGATCY 2 cut(s) 131, 167
MlsI TGGCCA 1 cut(s) 682
MluCI AATT 8 cut(s) 400, 540, 625, 787, 871, 888, 924, 973
MluNI TGGCCA 1 cut(s) 682
MlyI GAGTC 2 cut(s) 585, 951
MmeI TCCRAC 7 cut(s) 69, 319, 577, 706, 712, 778, 873
MnlI CCTC 5 cut(s) 79, 171, 250, 728, 794
Mox20I TGGCCA 1 cut(s) 682
Mph1103I ATGCAT 1 cut(s) 6
MscI TGGCCA 1 cut(s) 682
MseI TTAA 9 cut(s) 179, 216, 231, 318, 426, 567, 696, 705, 920
Msp20I TGGCCA 1 cut(s) 682
MspCI CTTAAG 1 cut(s) 566
MspI CCGG 2 cut(s) 447, 986
MspR9I CCNGG 4 cut(s) 225, 432, 573, 987
MvaI CCWGG 3 cut(s) 225, 432, 573
MvnI CGCG 2 cut(s) 592, 807
MwoI GCNNNNNNNGC 2 cut(s) 746, 815
NciI CCSGG 1 cut(s) 987
NdeII GATC 3 cut(s) 131, 148, 167
NlaIII CATG 3 cut(s) 8, 302, 513
NlaIV GGNNCC 2 cut(s) 133, 445
NmuCI GTSAC 1 cut(s) 279
NsiI ATGCAT 1 cut(s) 6
NspI RCATGY 1 cut(s) 513
PcsI WCGNNNNNNNCGW 1 cut(s) 77
PfeI GAWTC 2 cut(s) 812, 845
PflMI CCANNNNNTGG 1 cut(s) 299
PkrI GCNGC 1 cut(s) 806
PleI GAGTC 2 cut(s) 584, 951
PmaCI CACGTG 1 cut(s) 284
PmlI CACGTG 1 cut(s) 284
PpsI GAGTC 2 cut(s) 584, 951
Ppu21I YACGTR 1 cut(s) 284
PshBI ATTAAT 2 cut(s) 426, 705
Psp1406I AACGTT 2 cut(s) 155, 336
Psp6I CCWGG 3 cut(s) 223, 430, 571
PspCI CACGTG 1 cut(s) 284
PspGI CCWGG 3 cut(s) 223, 430, 571
PspN4I GGNNCC 2 cut(s) 133, 445
PspPI GGNCC 3 cut(s) 290, 597, 983
PsuI RGATCY 2 cut(s) 131, 167
RsaI GTAC 1 cut(s) 744
RsaNI GTAC 1 cut(s) 743
SalI GTCGAC 1 cut(s) 381
SaqAI TTAA 9 cut(s) 179, 216, 231, 318, 426, 567, 696, 705, 920
SatI GCNGC 1 cut(s) 805
Sau3AI GATC 3 cut(s) 131, 148, 167
Sau96I GGNCC 3 cut(s) 290, 597, 983
SchI GAGTC 2 cut(s) 585, 951
ScrFI CCNGG 4 cut(s) 225, 432, 573, 987
SinI GGWCC 3 cut(s) 290, 597, 983
SmlI CTYRAG 1 cut(s) 566
SmoI CTYRAG 1 cut(s) 566
Sse9I AATT 8 cut(s) 400, 540, 625, 787, 871, 888, 924, 973
SsiI CCGC 3 cut(s) 413, 805, 990
SspI AATATT 3 cut(s) 369, 822, 832
SspMI CTAG 2 cut(s) 137, 206
StyD4I CCNGG 4 cut(s) 223, 430, 571, 985
TaaI ACNGT 1 cut(s) 724
TaiI ACGT 5 cut(s) 158, 286, 339, 464, 865
TaqI TCGA 5 cut(s) 80, 382, 533, 949, 955
TasI AATT 8 cut(s) 400, 540, 625, 787, 871, 888, 924, 973
TatI WGTACW 1 cut(s) 742
TauI GCSGC 1 cut(s) 807
TfiI GAWTC 2 cut(s) 812, 845
Tru1I TTAA 9 cut(s) 179, 216, 231, 318, 426, 567, 696, 705, 920
Tru9I TTAA 9 cut(s) 179, 216, 231, 318, 426, 567, 696, 705, 920
TseFI GTSAC 1 cut(s) 279
Tsp45I GTSAC 1 cut(s) 279
TspDTI ATGAA 4 cut(s) 21, 345, 884, 935
Van91I CCANNNNNTGG 1 cut(s) 299
Vha464I CTTAAG 1 cut(s) 566
VpaK11BI GGWCC 3 cut(s) 290, 597, 983
VspI ATTAAT 2 cut(s) 426, 705
XapI RAATTY 2 cut(s) 540, 871
XbaI TCTAGA 1 cut(s) 205
XceI RCATGY 1 cut(s) 513
XmiI GTMKAC 1 cut(s) 382
XspI CTAG 2 cut(s) 137, 206
Zsp2I ATGCAT 1 cut(s) 6
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.