Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0006095

Physical Location & Seq

Genomic Coordinates Reverse (-)

1498438 .. 1500784

Gene Structure 2347 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

AT5G05080.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 756 bp

ATGGCTAGTAATGAGAATCTACCACCCAATGTTATCAAGCAGCTTGCCAAGGAGCTGAAGAGTCTTGACGAATCCCCTCCAGATGGCATCAAGGTTGTGGTAAATGACGAGGATTTCTCACAAATATGTGCTGATATTGAAGGACCAGTTGGTACTCCTTATGAGAACGGACTTTTCCGTATGAAGTTGGCCTTGTCACATGATTTTCCACATTCGCCTCCCAAAGGCTACTTCATGACAAAGATTTTCCATCCTAATGTTGCTTCTAATGGAGAGATATGTGTTAACACGCTTAAAAAAGATTGGAACCCTAGTCTTGGATTAAGACATGTTCTCTCTGTTGTAAGGTGCTTATTAATCGAGCCATTTCCAGAATCTGCATTAAATGAACAAGCTGGCAAGATGCTACTTGAAAACTATGACGAGTATGCGAGGCATGCTAGGCTTTACACAGGTATCCATGCTAAACCAAAACCCAAGTTCAAGACAGGAGCAATCTCAGAGTCAACAACCGCTCTAAATGTTGGCCAGACGAACAACGAGACGCCTGGTGCTGCTACTGCAATACCCTCTTCAATGACAGACATAAAGAGAGTAACAACGAGTGCCCAAGACCAACAACACGTAGCTAATGTCGTTGTAGCAGCCTCTGCAAGTGTGGTCACTACGACGCAAAAAAGGGAAGCAGGTTTGGCCAAGGTTCAGGCAGATAAGAAGAAGGTAGACGCTAGAAAGAAAAGCTTGAAGAGACTATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000209 GO:0003674 GO:0003824 GO:0004842 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0006464 GO:0006508 GO:0006511 GO:0006807 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009987 GO:0016567 GO:0016740 GO:0019538 GO:0019787 GO:0019899 GO:0019941 GO:0030163 GO:0031625 GO:0032446 GO:0036211 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0043632 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0044389 GO:0044424 GO:0044464 GO:0051603 GO:0061630 GO:0061659 GO:0070647 GO:0071704 GO:0140096 GO:1901564 GO:1901565 GO:1901575

KEGG Pathways

Metabolic & Signaling

ko04120 map04120

Pfam Domains

Protein Families

UQ_con

Protein Analysis

251

Amino Acids

27.4

Weight (kDa)

8.99

Isoelectric Point (pI)

30.69

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
UQ_con	PF00179	15 - 150	1e-38	Ubiquitin-conjugating enzyme

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0006095)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G05080 AT5G05080 AT5G05080 AT5G05080
fragaria_vesca	FvH4_1g29560 FvH4_1g29560 FvH4_1g29560
malus_domestica	MD12G1099900.v1.1 MD14G1093100.v1.1
prunus_persica	Prupe.7G024400_v2.0.a1 Prupe.7G024400_v2.0.a1 Prupe.7G024400_v2.0.a1
pyrus_communis	pycom12g09370 pycom14g09040
rosa_chinensis	RchiOBHm_Chr3g0495201
rosa_laevigata	RLG00000022639
rosa_multiflora	Rmu_sc0002943.1_g000025
rosa_roxburghii	Rroxscaffold_6G00390700
rosa_rugosa	Rorug03G0270100 Rorug03G0270200 Rorug03G0270200 Rorug03G0270300 Rorug03G0270300
rosa_samantha	Rh3AG319600 Rh3CG351600 Rh3DG353700
rosa_wichuraiana	Rw3G027910

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	677
AccBSI	CCGCTC	1 cut(s)	515
AccI	GTMKAC	1 cut(s)	723
AciI	CCGC	1 cut(s)	513
AcoI	YGGCCR	2 cut(s)	526, 693
AcuI	CTGAAG	1 cut(s)	77
AcyI	GRCGYC	1 cut(s)	545
AfaI	GTAC	1 cut(s)	154
AfiI	CCNNNNNNNGG	3 cut(s)	83, 224, 317
AflIII	ACRYGT	2 cut(s)	328, 622
AgsI	TTSAA	5 cut(s)	140, 413, 484, 576, 745
AjnI	CCWGG	1 cut(s)	547
AjuI	GAANNNNNNNTTGG	4 cut(s)	132, 164, 215, 247
AluBI	AGCT	5 cut(s)	43, 55, 395, 629, 741
AluI	AGCT	5 cut(s)	43, 55, 395, 629, 741
Alw26I	GTCTC	2 cut(s)	536, 742
AlwNI	CAGNNNCTG	2 cut(s)	377, 650
AoxI	GGCC	3 cut(s)	189, 526, 693
ApeKI	GCWGC	3 cut(s)	40, 554, 644
AseI	ATTAAT	1 cut(s)	356
AspS9I	GGNCC	1 cut(s)	143
AvaII	GGWCC	1 cut(s)	143
BaeGI	GKGCMC	1 cut(s)	610
BaeI	ACNNNNGTAYC	2 cut(s)	439, 472
BalI	TGGCCA	2 cut(s)	528, 695
BbvI	GCAGC	3 cut(s)	52, 541, 656
BccI	CCATC	2 cut(s)	77, 258
BciT130I	CCWGG	1 cut(s)	549
BciVI	GTATCC	1 cut(s)	467
BcoDI	GTCTC	2 cut(s)	536, 742
BfaI	CTAG	4 cut(s)	6, 312, 441, 729
BfuAI	ACCTGC	1 cut(s)	677
BfuI	GTATCC	1 cut(s)	467
BisI	GCNGC	3 cut(s)	41, 555, 645
BlsI	GCNGC	3 cut(s)	42, 556, 646
Bme1390I	CCNGG	1 cut(s)	549
Bme18I	GGWCC	1 cut(s)	143
BmgT120I	GGNCC	1 cut(s)	143
BmiI	GGNNCC	1 cut(s)	308
BmrFI	CCNGG	1 cut(s)	549
BmsI	GCATC	2 cut(s)	96, 393
BplI	GAGNNNNNCTC	2 cut(s)	101, 133
BpmI	CTGGAG	1 cut(s)	63
BsaAI	YACGTR	1 cut(s)	625
BsaHI	GRCGYC	1 cut(s)	545
BsaJI	CCNNGG	2 cut(s)	48, 696
Bsc4I	CCNNNNNNNGG	3 cut(s)	83, 224, 317
Bse1I	ACTGG	1 cut(s)	146
BseBI	CCWGG	1 cut(s)	549
BseDI	CCNNGG	2 cut(s)	48, 696
BseGI	GGATG	1 cut(s)	250
BseLI	CCNNNNNNNGG	3 cut(s)	83, 224, 317
BseMII	CTCAG	1 cut(s)	513
BseNI	ACTGG	1 cut(s)	146
BseSI	GKGCMC	1 cut(s)	610
BseXI	GCAGC	3 cut(s)	52, 541, 656
BshFI	GGCC	3 cut(s)	191, 528, 695
BslI	CCNNNNNNNGG	3 cut(s)	83, 224, 317
BsmAI	GTCTC	2 cut(s)	536, 742
BsmBI	CGTCTC	1 cut(s)	536
BsnI	GGCC	3 cut(s)	191, 528, 695
Bsp1286I	GDGCHC	1 cut(s)	610
BspACI	CCGC	1 cut(s)	513
BspANI	GGCC	3 cut(s)	191, 528, 695
BspCNI	CTCAG	1 cut(s)	512
BspHI	TCATGA	1 cut(s)	234
BspLI	GGNNCC	1 cut(s)	308
BspMI	ACCTGC	1 cut(s)	677
BsrBI	CCGCTC	1 cut(s)	515
BsrI	ACTGG	1 cut(s)	146
BssECI	CCNNGG	2 cut(s)	48, 696
BssNI	GRCGYC	1 cut(s)	545
BssT1I	CCWWGG	2 cut(s)	48, 696
Bst2UI	CCWGG	1 cut(s)	549
Bst6I	CTCTTC	3 cut(s)	53, 577, 740
BstACI	GRCGYC	1 cut(s)	545
BstAPI	GCANNNNNTGC	1 cut(s)	650
BstBAI	YACGTR	1 cut(s)	625
BstC8I	GCNNGC	3 cut(s)	45, 397, 438
BstDEI	CTNAG	1 cut(s)	499
BstENI	CCTNNNNNAGG	1 cut(s)	222
BstF5I	GGATG	1 cut(s)	250
BstMAI	GTCTC	2 cut(s)	536, 742
BstMWI	GCNNNNNNNGC	5 cut(s)	437, 442, 560, 650, 692
BstNI	CCWGG	1 cut(s)	549
BstNSI	RCATGY	2 cut(s)	332, 440
BstSCI	CCNGG	1 cut(s)	547
BstSLI	GKGCMC	1 cut(s)	610
BstV1I	GCAGC	3 cut(s)	52, 541, 656
BsuI	GTATCC	1 cut(s)	467
BsuRI	GGCC	3 cut(s)	191, 528, 695
BtsCI	GGATG	1 cut(s)	250
BveI	ACCTGC	1 cut(s)	677
Cac8I	GCNNGC	3 cut(s)	45, 397, 438
CaiI	CAGNNNCTG	2 cut(s)	377, 650
CciI	TCATGA	1 cut(s)	234
Cfr13I	GGNCC	1 cut(s)	143
CseI	GACGC	3 cut(s)	553, 679, 734
Csp6I	GTAC	1 cut(s)	153
CviAII	CATG	5 cut(s)	200, 235, 329, 437, 461
CviQI	GTAC	1 cut(s)	153
DdeI	CTNAG	1 cut(s)	499
EaeI	YGGCCR	2 cut(s)	526, 693
Eam1104I	CTCTTC	3 cut(s)	53, 577, 740
EarI	CTCTTC	3 cut(s)	53, 577, 740
Eco130I	CCWWGG	2 cut(s)	48, 696
Eco47I	GGWCC	1 cut(s)	143
Eco57I	CTGAAG	1 cut(s)	77
EcoNI	CCTNNNNNAGG	1 cut(s)	222
EcoRII	CCWGG	1 cut(s)	547
EcoT14I	CCWWGG	2 cut(s)	48, 696
ErhI	CCWWGG	2 cut(s)	48, 696
Esp3I	CGTCTC	1 cut(s)	536
FaeI	CATG	5 cut(s)	203, 238, 332, 440, 464
FalI	AAGNNNNNCTT	3 cut(s)	176, 208, 725
FatI	CATG	5 cut(s)	199, 234, 328, 436, 460
FblI	GTMKAC	1 cut(s)	723
Fnu4HI	GCNGC	3 cut(s)	41, 555, 645
FokI	GGATG	1 cut(s)	237
Fsp4HI	GCNGC	3 cut(s)	41, 555, 645
FspBI	CTAG	4 cut(s)	6, 312, 441, 729
GluI	GCNGC	3 cut(s)	41, 555, 645
GsuI	CTGGAG	1 cut(s)	63
HaeIII	GGCC	3 cut(s)	191, 528, 695
HgaI	GACGC	3 cut(s)	553, 679, 734
Hin1I	GRCGYC	1 cut(s)	545
Hin1II	CATG	5 cut(s)	203, 238, 332, 440, 464
HincII	GTYRAC	2 cut(s)	286, 507
HindII	GTYRAC	2 cut(s)	286, 507
HindIII	AAGCTT	1 cut(s)	739
HinfI	GANTC	5 cut(s)	16, 61, 71, 374, 503
HpaI	GTTAAC	1 cut(s)	286
Hpy166II	GTNNAC	3 cut(s)	286, 507, 724
Hpy188I	TCNGA	1 cut(s)	502
Hpy188III	TCNNGA	5 cut(s)	65, 80, 235, 371, 484
Hpy8I	GTNNAC	3 cut(s)	286, 507, 724
Hpy99I	CGWCG	1 cut(s)	673
HpyAV	CCTTC	2 cut(s)	134, 712
HpyCH4IV	ACGT	1 cut(s)	624
HpyCH4V	TGCA	3 cut(s)	380, 563, 653
HpyF10VI	GCNNNNNNNGC	5 cut(s)	437, 442, 560, 650, 692
HpyF3I	CTNAG	1 cut(s)	499
HpySE526I	ACGT	1 cut(s)	624
Hsp92I	GRCGYC	1 cut(s)	545
Hsp92II	CATG	5 cut(s)	203, 238, 332, 440, 464
KspAI	GTTAAC	1 cut(s)	286
LmnI	GCTCC	2 cut(s)	52, 491
Lsp1109I	GCAGC	3 cut(s)	52, 541, 656
LweI	GCATC	2 cut(s)	96, 393
MaeI	CTAG	4 cut(s)	6, 312, 441, 729
MaeII	ACGT	1 cut(s)	624
MaeIII	GTNAC	3 cut(s)	195, 595, 661
MbiI	CCGCTC	1 cut(s)	515
MboII	GAAGA	3 cut(s)	70, 564, 727
MhlI	GDGCHC	1 cut(s)	610
MlsI	TGGCCA	2 cut(s)	528, 695
MluNI	TGGCCA	2 cut(s)	528, 695
MlyI	GAGTC	2 cut(s)	70, 512
MnlI	CCTC	6 cut(s)	87, 103, 228, 426, 580, 658
Mox20I	TGGCCA	2 cut(s)	528, 695
MscI	TGGCCA	2 cut(s)	528, 695
MseI	TTAA	5 cut(s)	285, 294, 323, 356, 383
MslI	CAYNNNNRTG	2 cut(s)	124, 255
Msp20I	TGGCCA	2 cut(s)	528, 695
MspR9I	CCNGG	1 cut(s)	549
MvaI	CCWGG	1 cut(s)	549
MwoI	GCNNNNNNNGC	5 cut(s)	437, 442, 560, 650, 692
NlaIII	CATG	5 cut(s)	203, 238, 332, 440, 464
NlaIV	GGNNCC	1 cut(s)	308
NmuCI	GTSAC	2 cut(s)	195, 661
NspI	RCATGY	2 cut(s)	332, 440
PaeI	GCATGC	1 cut(s)	440
PagI	TCATGA	1 cut(s)	234
PciI	ACATGT	1 cut(s)	328
PfeI	GAWTC	3 cut(s)	16, 71, 374
PkrI	GCNGC	3 cut(s)	42, 556, 646
PleI	GAGTC	2 cut(s)	69, 511
PpsI	GAGTC	2 cut(s)	69, 511
Ppu21I	YACGTR	1 cut(s)	625
PscI	ACATGT	1 cut(s)	328
PshBI	ATTAAT	1 cut(s)	356
Psp6I	CCWGG	1 cut(s)	547
PspGI	CCWGG	1 cut(s)	547
PspN4I	GGNNCC	1 cut(s)	308
PspPI	GGNCC	1 cut(s)	143
PstNI	CAGNNNCTG	2 cut(s)	377, 650
RsaI	GTAC	1 cut(s)	154
RsaNI	GTAC	1 cut(s)	153
RseI	CAYNNNNRTG	2 cut(s)	124, 255
SaqAI	TTAA	5 cut(s)	285, 294, 323, 356, 383
SatI	GCNGC	3 cut(s)	41, 555, 645
Sau96I	GGNCC	1 cut(s)	143
SchI	GAGTC	2 cut(s)	70, 512
ScrFI	CCNGG	1 cut(s)	549
SduI	GDGCHC	1 cut(s)	610
SfaNI	GCATC	2 cut(s)	96, 393
SinI	GGWCC	1 cut(s)	143
SmiMI	CAYNNNNRTG	2 cut(s)	124, 255
SphI	GCATGC	1 cut(s)	440
SsiI	CCGC	1 cut(s)	513
SspMI	CTAG	4 cut(s)	6, 312, 441, 729
StyD4I	CCNGG	1 cut(s)	547
StyI	CCWWGG	2 cut(s)	48, 696
TaiI	ACGT	1 cut(s)	627
TaqI	TCGA	1 cut(s)	360
TfiI	GAWTC	3 cut(s)	16, 71, 374
Tru1I	TTAA	5 cut(s)	285, 294, 323, 356, 383
Tru9I	TTAA	5 cut(s)	285, 294, 323, 356, 383
TseFI	GTSAC	2 cut(s)	195, 661
TseI	GCWGC	3 cut(s)	40, 554, 644
Tsp45I	GTSAC	2 cut(s)	195, 661
TspDTI	ATGAA	3 cut(s)	197, 223, 402
TspGWI	ACGGA	2 cut(s)	167, 183
VpaK11BI	GGWCC	1 cut(s)	143
VspI	ATTAAT	1 cut(s)	356
XagI	CCTNNNNNAGG	1 cut(s)	222
XceI	RCATGY	2 cut(s)	332, 440
XmiI	GTMKAC	1 cut(s)	723
XspI	CTAG	4 cut(s)	6, 312, 441, 729

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.