Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp07

Orthogroup ID

OG0006095

Physical Location & Seq

Genomic Coordinates Forward (+)

3854945 .. 3859165

Gene Structure 4221 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.7G024400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 813 bp

ATGGCTACTAATGAAAATCTCCCACCAAATGTAATTAAGCAACTTGCGAAGGAATTGAAGAATCTTGATGAGTCCCCACCTGAAGGCATTAAAGTTGGTGTTAATGATGATGATTTTTCGATCATATATGCGGATATTGAAGGCCCAGCTGGCACTCCTTACGAGAATGGTGTTTTCCGCATGAAGTTGTTATTGTCTCGTGACTTCCCACACTCTCCTCCTAAAGGCTACTTCCTGACTAAGATTTTCCATCCAAACATTGCAATGAATGGTGAGATTTGTGTCAACACCTTGAAAAAAGATTGGAATCCAAGTCTTGGATTACGACATATTCTGATTGTAGTTAGATGTTTATTGATCGAACCATTTCCAGAATCAGCGTTGAATGAACAGGCGGGCAAGATGCTGCTTGAAAATTATGAAGAATATGCAAAACATGCCAGACTTTATACTGGAATCCATGCCAAGCCAAAACCCAAGTTTAAAACAGGAGCTATTTCAGAGTCGACTACTGCACTGAACGTTGACCAAACTAACAGCTCTGCACTTAATGCTGATCAAAAGATCACAGCACCTGGTGCTGCTTTGCCAGTGATCTCTGTATCTCCGTCCCCACTGGCCCCTATTACAGTGATGAGAGGAAATGGTCAGGATCAACCAGCTGTTGTTGCTCCAGTGGAGACTGGAGTTGGTGGCTGTGCTGCATCAGCAGCCGCAACTACTACAACGCTAAGGAAGGAAGGTGGATTGGCAAAAGCACAGGCAGACAAGAAGAAAATAGATGCAAGGAAGAAAAGTTTGAAGAGATTATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000209 GO:0003674 GO:0003824 GO:0004842 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0006464 GO:0006508 GO:0006511 GO:0006807 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009987 GO:0016567 GO:0016740 GO:0019538 GO:0019787 GO:0019899 GO:0019941 GO:0030163 GO:0031625 GO:0032446 GO:0036211 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0043632 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0044389 GO:0044424 GO:0044464 GO:0051603 GO:0061630 GO:0061659 GO:0070647 GO:0071704 GO:0140096 GO:1901564 GO:1901565 GO:1901575

KEGG Pathways

Metabolic & Signaling

ko04120 map04120

Pfam Domains

Protein Families

UQ_con

Protein Analysis

271

Amino Acids

29.07

Weight (kDa)

8.97

Isoelectric Point (pI)

39.66

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006095)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G05080 AT5G05080 AT5G05080 AT5G05080
fragaria_vesca	FvH4_1g29560 FvH4_1g29560 FvH4_1g29560
malus_domestica	MD12G1099900.v1.1 MD14G1093100.v1.1
prunus_persica	Prupe.7G024400_v2.0.a1 Prupe.7G024400_v2.0.a1 Prupe.7G024400_v2.0.a1
pyrus_communis	pycom12g09370 pycom14g09040
rosa_chinensis	RchiOBHm_Chr3g0495201
rosa_laevigata	RLG00000022639
rosa_multiflora	Rmu_sc0002943.1_g000025
rosa_roxburghii	Rroxscaffold_6G00390700
rosa_rugosa	Rorug03G0270100 Rorug03G0270200 Rorug03G0270200 Rorug03G0270300 Rorug03G0270300
rosa_samantha	Rh3AG319600 Rh3CG351600 Rh3DG353700
rosa_wichuraiana	Rw3G027910

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	317
AccI	GTMKAC	1 cut(s)	506
AciI	CCGC	4 cut(s)	131, 178, 395, 714
AclI	AACGTT	1 cut(s)	522
AclWI	GGATC	1 cut(s)	660
AcuI	CTGAAG	1 cut(s)	102
AdeI	CACNNNGTG	1 cut(s)	578
AfiI	CCNNNNNNNGG	3 cut(s)	83, 224, 317
AgsI	TTSAA	6 cut(s)	58, 140, 295, 385, 413, 802
AjnI	CCWGG	1 cut(s)	574
AluBI	AGCT	4 cut(s)	149, 494, 540, 662
AluI	AGCT	4 cut(s)	149, 494, 540, 662
Alw26I	GTCTC	2 cut(s)	201, 674
AlwI	GGATC	1 cut(s)	660
AlwNI	CAGNNNCTG	1 cut(s)	575
AoxI	GGCC	2 cut(s)	142, 618
ApeKI	GCWGC	4 cut(s)	406, 581, 701, 710
Asp700I	GAANNNNTTC	1 cut(s)	366
AspS9I	GGNCC	2 cut(s)	143, 619
AsuHPI	GGTGA	1 cut(s)	284
BauI	CACGAG	1 cut(s)	198
BbvI	GCAGC	4 cut(s)	393, 568, 688, 722
BccI	CCATC	1 cut(s)	258
BciT130I	CCWGG	1 cut(s)	576
BclI	TGATCA	1 cut(s)	556
BcoDI	GTCTC	2 cut(s)	201, 674
BglI	GCCNNNNNGGC	1 cut(s)	150
BisI	GCNGC	5 cut(s)	407, 582, 702, 711, 714
BlsI	GCNGC	5 cut(s)	408, 583, 703, 712, 715
Bme1390I	CCNGG	1 cut(s)	576
BmgT120I	GGNCC	2 cut(s)	143, 619
BmiI	GGNNCC	1 cut(s)	621
BmrFI	CCNGG	1 cut(s)	576
BmsI	GCATC	3 cut(s)	393, 713, 772
BpmI	CTGGAG	2 cut(s)	657, 705
Bpu10I	CCTNAGC	1 cut(s)	731
BsaBI	GATNNNNATC	1 cut(s)	306
Bsc4I	CCNNNNNNNGG	3 cut(s)	83, 224, 317
Bse1I	ACTGG	5 cut(s)	457, 590, 621, 674, 688
Bse3DI	GCAATG	2 cut(s)	258, 270
Bse8I	GATNNNNATC	1 cut(s)	306
BseBI	CCWGG	1 cut(s)	576
BseGI	GGATG	1 cut(s)	250
BseJI	GATNNNNATC	1 cut(s)	306
BseLI	CCNNNNNNNGG	3 cut(s)	83, 224, 317
BseMI	GCAATG	2 cut(s)	258, 270
BseNI	ACTGG	5 cut(s)	457, 590, 621, 674, 688
BseRI	GAGGAG	1 cut(s)	207
BseXI	GCAGC	4 cut(s)	393, 568, 688, 722
BseYI	CCCAGC	1 cut(s)	145
BsgI	GTGCAG	2 cut(s)	498, 528
BshFI	GGCC	2 cut(s)	144, 620
BslFI	GGGAC	2 cut(s)	58, 595
BslI	CCNNNNNNNGG	3 cut(s)	83, 224, 317
BsmAI	GTCTC	2 cut(s)	201, 674
BsmFI	GGGAC	2 cut(s)	58, 595
BsnI	GGCC	2 cut(s)	144, 620
Bsp143I	GATC	6 cut(s)	120, 357, 556, 564, 594, 652
BspACI	CCGC	4 cut(s)	131, 178, 395, 714
BspANI	GGCC	2 cut(s)	144, 620
BspLI	GGNNCC	1 cut(s)	621
BspPI	GGATC	1 cut(s)	660
BsrDI	GCAATG	2 cut(s)	258, 270
BsrI	ACTGG	5 cut(s)	457, 590, 621, 674, 688
BssMI	GATC	6 cut(s)	120, 357, 556, 564, 594, 652
BssSI	CACGAG	1 cut(s)	198
Bst2BI	CACGAG	1 cut(s)	198
Bst2UI	CCWGG	1 cut(s)	576
Bst4CI	ACNGT	1 cut(s)	631
Bst6I	CTCTTC	1 cut(s)	797
BstAPI	GCANNNNNTGC	3 cut(s)	437, 551, 578
BstC8I	GCNNGC	2 cut(s)	151, 397
BstDEI	CTNAG	2 cut(s)	240, 731
BstENI	CCTNNNNNAGG	1 cut(s)	222
BstF5I	GGATG	1 cut(s)	250
BstKTI	GATC	6 cut(s)	123, 360, 559, 567, 597, 655
BstMAI	GTCTC	2 cut(s)	201, 674
BstMBI	GATC	6 cut(s)	120, 357, 556, 564, 594, 652
BstMWI	GCNNNNNNNGC	7 cut(s)	150, 437, 551, 578, 668, 707, 710
BstNI	CCWGG	1 cut(s)	576
BstNSI	RCATGY	1 cut(s)	440
BstSCI	CCNGG	1 cut(s)	574
BstV1I	GCAGC	4 cut(s)	393, 568, 688, 722
BsuRI	GGCC	2 cut(s)	144, 620
BtsCI	GGATG	1 cut(s)	250
BtsIMutI	CAGTG	5 cut(s)	515, 597, 614, 636, 681
Cac8I	GCNNGC	2 cut(s)	151, 397
CaiI	CAGNNNCTG	1 cut(s)	575
Cfr13I	GGNCC	2 cut(s)	143, 619
CsiI	ACCWGGT	1 cut(s)	574
CviAII	CATG	3 cut(s)	181, 437, 461
DdeI	CTNAG	2 cut(s)	240, 731
DpnI	GATC	6 cut(s)	122, 359, 558, 566, 596, 654
DpnII	GATC	6 cut(s)	120, 357, 556, 564, 594, 652
DraI	TTTAAA	1 cut(s)	484
DraIII	CACNNNGTG	1 cut(s)	578
Eam1104I	CTCTTC	1 cut(s)	797
EarI	CTCTTC	1 cut(s)	797
Eco57I	CTGAAG	1 cut(s)	102
EcoNI	CCTNNNNNAGG	1 cut(s)	222
EcoRII	CCWGG	1 cut(s)	574
FaeI	CATG	3 cut(s)	184, 440, 464
FaqI	GGGAC	2 cut(s)	58, 595
FatI	CATG	3 cut(s)	180, 436, 460
FauI	CCCGC	1 cut(s)	388
FbaI	TGATCA	1 cut(s)	556
FblI	GTMKAC	1 cut(s)	506
Fnu4HI	GCNGC	5 cut(s)	407, 582, 702, 711, 714
FokI	GGATG	1 cut(s)	237
Fsp4HI	GCNGC	5 cut(s)	407, 582, 702, 711, 714
GluI	GCNGC	5 cut(s)	407, 582, 702, 711, 714
GsaI	CCCAGC	1 cut(s)	149
GsuI	CTGGAG	2 cut(s)	657, 705
HaeIII	GGCC	2 cut(s)	144, 620
Hin1II	CATG	3 cut(s)	184, 440, 464
HincII	GTYRAC	3 cut(s)	286, 507, 526
HindII	GTYRAC	3 cut(s)	286, 507, 526
HinfI	GANTC	6 cut(s)	61, 71, 307, 374, 456, 503
HphI	GGTGA	1 cut(s)	284
Hpy166II	GTNNAC	3 cut(s)	286, 507, 526
Hpy188I	TCNGA	2 cut(s)	336, 502
Hpy188III	TCNNGA	5 cut(s)	65, 200, 235, 371, 650
Hpy8I	GTNNAC	3 cut(s)	286, 507, 526
HpyAV	CCTTC	5 cut(s)	43, 77, 134, 730, 734
HpyCH4III	ACNGT	1 cut(s)	631
HpyCH4IV	ACGT	1 cut(s)	522
HpyCH4V	TGCA	6 cut(s)	263, 431, 515, 545, 704, 785
HpyF10VI	GCNNNNNNNGC	7 cut(s)	150, 437, 551, 578, 668, 707, 710
HpyF3I	CTNAG	2 cut(s)	240, 731
HpySE526I	ACGT	1 cut(s)	522
Hsp92II	CATG	3 cut(s)	184, 440, 464
Ksp22I	TGATCA	1 cut(s)	556
Kzo9I	GATC	6 cut(s)	120, 357, 556, 564, 594, 652
LmnI	GCTCC	2 cut(s)	491, 676
Lsp1109I	GCAGC	4 cut(s)	393, 568, 688, 722
LweI	GCATC	3 cut(s)	393, 713, 772
MabI	ACCWGGT	1 cut(s)	574
MaeII	ACGT	1 cut(s)	522
MaeIII	GTNAC	1 cut(s)	200
MalI	GATC	6 cut(s)	122, 359, 558, 566, 596, 654
MboI	GATC	6 cut(s)	120, 357, 556, 564, 594, 652
MboII	GAAGA	4 cut(s)	70, 434, 784, 802
MluCI	AATT	3 cut(s)	33, 53, 415
MlyI	GAGTC	2 cut(s)	80, 512
MnlI	CCTC	2 cut(s)	228, 632
MroXI	GAANNNNTTC	1 cut(s)	366
MseI	TTAA	5 cut(s)	36, 90, 102, 483, 549
MslI	CAYNNNNRTG	1 cut(s)	263
MspA1I	CMGCKG	2 cut(s)	149, 662
MspR9I	CCNGG	1 cut(s)	576
MvaI	CCWGG	1 cut(s)	576
MwoI	GCNNNNNNNGC	7 cut(s)	150, 437, 551, 578, 668, 707, 710
NdeII	GATC	6 cut(s)	120, 357, 556, 564, 594, 652
NlaIII	CATG	3 cut(s)	184, 440, 464
NlaIV	GGNNCC	1 cut(s)	621
NmuCI	GTSAC	1 cut(s)	200
NspI	RCATGY	1 cut(s)	440
PdmI	GAANNNNTTC	1 cut(s)	366
PfeI	GAWTC	4 cut(s)	61, 307, 374, 456
PflMI	CCANNNNNTGG	1 cut(s)	317
PkrI	GCNGC	5 cut(s)	408, 583, 703, 712, 715
PleI	GAGTC	2 cut(s)	79, 511
PpsI	GAGTC	2 cut(s)	79, 511
Psp1406I	AACGTT	1 cut(s)	522
Psp6I	CCWGG	1 cut(s)	574
PspFI	CCCAGC	1 cut(s)	145
PspGI	CCWGG	1 cut(s)	574
PspN4I	GGNNCC	1 cut(s)	621
PspPI	GGNCC	2 cut(s)	143, 619
PstNI	CAGNNNCTG	1 cut(s)	575
PvuII	CAGCTG	2 cut(s)	149, 662
RseI	CAYNNNNRTG	1 cut(s)	263
SalI	GTCGAC	1 cut(s)	505
SaqAI	TTAA	5 cut(s)	36, 90, 102, 483, 549
SatI	GCNGC	5 cut(s)	407, 582, 702, 711, 714
Sau3AI	GATC	6 cut(s)	120, 357, 556, 564, 594, 652
Sau96I	GGNCC	2 cut(s)	143, 619
SchI	GAGTC	2 cut(s)	80, 512
ScrFI	CCNGG	1 cut(s)	576
SetI	ASST	9 cut(s)	82, 151, 293, 496, 525, 542, 577, 664, 745
SexAI	ACCWGGT	1 cut(s)	574
SfaNI	GCATC	3 cut(s)	393, 713, 772
SmiMI	CAYNNNNRTG	1 cut(s)	263
Sse9I	AATT	3 cut(s)	33, 53, 415
SsiI	CCGC	4 cut(s)	131, 178, 395, 714
StyD4I	CCNGG	1 cut(s)	574
TaaI	ACNGT	1 cut(s)	631
TaiI	ACGT	1 cut(s)	525
TaqI	TCGA	3 cut(s)	119, 360, 506
TasI	AATT	3 cut(s)	33, 53, 415
TauI	GCSGC	1 cut(s)	716
TfiI	GAWTC	4 cut(s)	61, 307, 374, 456
Tru1I	TTAA	5 cut(s)	36, 90, 102, 483, 549
Tru9I	TTAA	5 cut(s)	36, 90, 102, 483, 549
TscAI	CASTG	5 cut(s)	522, 597, 621, 636, 681
TseFI	GTSAC	1 cut(s)	200
TseI	GCWGC	4 cut(s)	406, 581, 701, 710
Tsp45I	GTSAC	1 cut(s)	200
TspDTI	ATGAA	5 cut(s)	27, 197, 281, 402, 435
TspGWI	ACGGA	1 cut(s)	597
TspRI	CASTG	5 cut(s)	522, 597, 621, 636, 681
Van91I	CCANNNNNTGG	1 cut(s)	317
XagI	CCTNNNNNAGG	1 cut(s)	222
XceI	RCATGY	1 cut(s)	440
XmiI	GTMKAC	1 cut(s)	506
XmnI	GAANNNNTTC	1 cut(s)	366

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.