Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr3C

Orthogroup ID

OG0006095

Physical Location & Seq

Genomic Coordinates Forward (+)

42449728 .. 42452299

Gene Structure 2572 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh3CG351600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 831 bp

ATGGCTACTAACGAAAATCTGCCACCAAACGTGATCAAGCAACTTGCAAAGGAATTGAAGAGTCTTGACGAATCCCCTCCTGAAGGCATTAAAGTTTGCGTGAATGATGACGACTTTTCAATCATATTTGCTGATATTGAAGGGCCAGCTGGCACTCCTTACGAGAATGGTGTTTTTCGCATGAAGTTGTTGTTATCTCATGACTTTCCACACTCCCCCCCCAAAGGTTACTTTCTGACTAGGATTTTCCATCCAAACATTGCAAATAATGGTGAGATTTGTGTGAATACGTTAAAAAAAGATTGGAATCCAAGTCTTGGATTACGACATGTTCTCATTGTGGTTAGATGTCTGTTGATTGAACCATTTCCAGAATCAGCCTTAAATGAACAAGCAGGGAAGATGCTGCTTGAGAATTATGAGGAATATGCAAGACATGCCAGGCTTTATACCGGAATACATGCCAAGCCAAAACCCAAGTTTAAAACAGGAGCTATTTCTGAGTCTACTACTGCACTGAATGTTGACCAATCTAACACCTCGGCACTTAATGCTGATCAAAAGATCACGGCAGGTGGTGCTGCTTTGCCACTGCCATCCCCATCCCCAACCCCATCCCCATCCGTACTGGTCCCTTTGACAGTCACTGCAAGAGGACTTGGCCAGGATCAGCCGGCTGTTGTAGCTGCTGCAGTGGAGACGAGAGTTGGTGGGGCTGCTGCATCAACTGTAGCAAGTAGTACGACACTGAAGAAGGAAGCTGGCTTGATAAAAGCACAGGCAGAAAAGAAGAAAATCGATGCAAGAAAGAAAAGTCTGAAGAGATTATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000209 GO:0003674 GO:0003824 GO:0004842 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0006464 GO:0006508 GO:0006511 GO:0006807 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009987 GO:0016567 GO:0016740 GO:0019538 GO:0019787 GO:0019899 GO:0019941 GO:0030163 GO:0031625 GO:0032446 GO:0036211 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0043632 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0044389 GO:0044424 GO:0044464 GO:0051603 GO:0061630 GO:0061659 GO:0070647 GO:0071704 GO:0140096 GO:1901564 GO:1901565 GO:1901575

KEGG Pathways

Metabolic & Signaling

ko04120 map04120

Pfam Domains

Protein Families

UQ_con

Protein Analysis

276

Amino Acids

29.68

Weight (kDa)

8.99

Isoelectric Point (pI)

39.75

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
UQ_con	PF00179	15 - 150	1.1e-38	Ubiquitin-conjugating enzyme

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0006095)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G05080 AT5G05080 AT5G05080 AT5G05080
fragaria_vesca	FvH4_1g29560 FvH4_1g29560 FvH4_1g29560
malus_domestica	MD12G1099900.v1.1 MD14G1093100.v1.1
prunus_persica	Prupe.7G024400_v2.0.a1 Prupe.7G024400_v2.0.a1 Prupe.7G024400_v2.0.a1
pyrus_communis	pycom12g09370 pycom14g09040
rosa_chinensis	RchiOBHm_Chr3g0495201
rosa_laevigata	RLG00000022639
rosa_multiflora	Rmu_sc0002943.1_g000025
rosa_roxburghii	Rroxscaffold_6G00390700
rosa_rugosa	Rorug03G0270100 Rorug03G0270200 Rorug03G0270200 Rorug03G0270300 Rorug03G0270300
rosa_samantha	Rh3AG319600 Rh3CG351600 Rh3DG353700
rosa_wichuraiana	Rw3G027910

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	563
Acc36I	ACCTGC	1 cut(s)	563
AccB7I	CCANNNNNTGG	1 cut(s)	317
AccI	GTMKAC	1 cut(s)	506
AclWI	GGATC	1 cut(s)	675
AcoI	YGGCCR	1 cut(s)	661
AcuI	CTGAAG	2 cut(s)	102, 770
AfaI	GTAC	2 cut(s)	627, 742
AfiI	CCNNNNNNNGG	3 cut(s)	83, 224, 317
AflIII	ACRYGT	1 cut(s)	328
AgsI	TTSAA	4 cut(s)	58, 120, 140, 362
AjnI	CCWGG	2 cut(s)	440, 663
AluBI	AGCT	4 cut(s)	149, 494, 686, 761
AluI	AGCT	4 cut(s)	149, 494, 686, 761
Alw26I	GTCTC	1 cut(s)	692
AlwI	GGATC	1 cut(s)	675
AlwNI	CAGNNNCTG	1 cut(s)	647
AoxI	GGCC	2 cut(s)	143, 661
ApeKI	GCWGC	6 cut(s)	406, 581, 686, 689, 716, 719
Asp700I	GAANNNNTTC	1 cut(s)	366
AspS9I	GGNCC	2 cut(s)	143, 631
AsuHPI	GGTGA	1 cut(s)	284
AvaII	GGWCC	1 cut(s)	631
BalI	TGGCCA	1 cut(s)	663
BbvI	GCAGC	6 cut(s)	393, 568, 673, 676, 703, 706
BccI	CCATC	5 cut(s)	258, 604, 610, 622, 628
BceAI	ACGGC	1 cut(s)	585
BciT130I	CCWGG	2 cut(s)	442, 665
BclI	TGATCA	2 cut(s)	33, 556
BcoDI	GTCTC	1 cut(s)	692
BfaI	CTAG	1 cut(s)	240
BfmI	CTRYAG	2 cut(s)	690, 729
BfuAI	ACCTGC	1 cut(s)	563
BisI	GCNGC	6 cut(s)	407, 582, 687, 690, 717, 720
BlsI	GCNGC	6 cut(s)	408, 583, 688, 691, 718, 721
Bme1390I	CCNGG	2 cut(s)	442, 665
Bme18I	GGWCC	1 cut(s)	631
BmgT120I	GGNCC	2 cut(s)	143, 631
BmiI	GGNNCC	1 cut(s)	633
BmrFI	CCNGG	2 cut(s)	442, 665
BmsI	GCATC	3 cut(s)	393, 731, 790
BpuEI	CTTGAG	1 cut(s)	431
Bsa29I	ATCGAT	1 cut(s)	798
BsaBI	GATNNNNATC	1 cut(s)	306
BsaJI	CCNNGG	1 cut(s)	540
BsaWI	WCCGGW	1 cut(s)	452
Bsc4I	CCNNNNNNNGG	3 cut(s)	83, 224, 317
Bse118I	RCCGGY	1 cut(s)	673
Bse1I	ACTGG	1 cut(s)	633
Bse3DI	GCAATG	1 cut(s)	258
Bse8I	GATNNNNATC	1 cut(s)	306
BseBI	CCWGG	2 cut(s)	442, 665
BseCI	ATCGAT	1 cut(s)	798
BseDI	CCNNGG	1 cut(s)	540
BseGI	GGATG	5 cut(s)	250, 596, 602, 614, 620
BseJI	GATNNNNATC	1 cut(s)	306
BseLI	CCNNNNNNNGG	3 cut(s)	83, 224, 317
BseMI	GCAATG	1 cut(s)	258
BseMII	CTCAG	1 cut(s)	492
BseNI	ACTGG	1 cut(s)	633
BseXI	GCAGC	6 cut(s)	393, 568, 673, 676, 703, 706
BsgI	GTGCAG	1 cut(s)	498
BshFI	GGCC	2 cut(s)	145, 663
BshVI	ATCGAT	1 cut(s)	798
BsiSI	CCGG	2 cut(s)	453, 674
BslFI	GGGAC	1 cut(s)	617
BslI	CCNNNNNNNGG	3 cut(s)	83, 224, 317
BsmAI	GTCTC	1 cut(s)	692
BsmBI	CGTCTC	1 cut(s)	692
BsmFI	GGGAC	1 cut(s)	617
BsnI	GGCC	2 cut(s)	145, 663
Bsp143I	GATC	4 cut(s)	33, 556, 564, 667
BspANI	GGCC	2 cut(s)	145, 663
BspCNI	CTCAG	1 cut(s)	493
BspDI	ATCGAT	1 cut(s)	798
BspHI	TCATGA	1 cut(s)	199
BspLI	GGNNCC	1 cut(s)	633
BspMAI	CTGCAG	1 cut(s)	694
BspMI	ACCTGC	1 cut(s)	563
BspPI	GGATC	1 cut(s)	675
BsrDI	GCAATG	1 cut(s)	258
BsrFI	RCCGGY	1 cut(s)	673
BsrI	ACTGG	1 cut(s)	633
BssAI	RCCGGY	1 cut(s)	673
BssECI	CCNNGG	1 cut(s)	540
BssMI	GATC	4 cut(s)	33, 556, 564, 667
Bst2UI	CCWGG	2 cut(s)	442, 665
Bst4CI	ACNGT	2 cut(s)	643, 730
Bst6I	CTCTTC	2 cut(s)	53, 815
BstAPI	GCANNNNNTGC	3 cut(s)	437, 551, 578
BstC8I	GCNNGC	4 cut(s)	147, 151, 675, 763
BstDEI	CTNAG	1 cut(s)	501
BstENI	CCTNNNNNAGG	1 cut(s)	81
BstF5I	GGATG	5 cut(s)	250, 596, 602, 614, 620
BstKTI	GATC	4 cut(s)	36, 559, 567, 670
BstMAI	GTCTC	1 cut(s)	692
BstMBI	GATC	4 cut(s)	33, 556, 564, 667
BstMWI	GCNNNNNNNGC	4 cut(s)	437, 551, 578, 683
BstNI	CCWGG	2 cut(s)	442, 665
BstNSI	RCATGY	3 cut(s)	332, 440, 464
BstSCI	CCNGG	2 cut(s)	440, 663
BstSFI	CTRYAG	2 cut(s)	690, 729
BstV1I	GCAGC	6 cut(s)	393, 568, 673, 676, 703, 706
Bsu15I	ATCGAT	1 cut(s)	798
BsuRI	GGCC	2 cut(s)	145, 663
BsuTUI	ATCGAT	1 cut(s)	798
BtsCI	GGATG	5 cut(s)	250, 596, 602, 614, 620
BtsI	GCAGTG	3 cut(s)	590, 645, 699
BtsIMutI	CAGTG	5 cut(s)	515, 590, 645, 699, 746
BveI	ACCTGC	1 cut(s)	563
Cac8I	GCNNGC	4 cut(s)	147, 151, 675, 763
CaiI	CAGNNNCTG	1 cut(s)	647
CciI	TCATGA	1 cut(s)	199
Cfr10I	RCCGGY	1 cut(s)	673
Cfr13I	GGNCC	2 cut(s)	143, 631
ClaI	ATCGAT	1 cut(s)	798
Csp6I	GTAC	2 cut(s)	626, 741
CviAII	CATG	5 cut(s)	181, 200, 329, 437, 461
CviQI	GTAC	2 cut(s)	626, 741
DdeI	CTNAG	1 cut(s)	501
DpnI	GATC	4 cut(s)	35, 558, 566, 669
DpnII	GATC	4 cut(s)	33, 556, 564, 667
DraI	TTTAAA	1 cut(s)	484
EaeI	YGGCCR	1 cut(s)	661
Eam1104I	CTCTTC	2 cut(s)	53, 815
EarI	CTCTTC	2 cut(s)	53, 815
Eco47I	GGWCC	1 cut(s)	631
Eco57I	CTGAAG	2 cut(s)	102, 770
EcoNI	CCTNNNNNAGG	1 cut(s)	81
EcoRII	CCWGG	2 cut(s)	440, 663
Esp3I	CGTCTC	1 cut(s)	692
FaeI	CATG	5 cut(s)	184, 203, 332, 440, 464
FaqI	GGGAC	1 cut(s)	617
FatI	CATG	5 cut(s)	180, 199, 328, 436, 460
FbaI	TGATCA	2 cut(s)	33, 556
FblI	GTMKAC	1 cut(s)	506
Fnu4HI	GCNGC	6 cut(s)	407, 582, 687, 690, 717, 720
FokI	GGATG	5 cut(s)	237, 583, 589, 601, 607
Fsp4HI	GCNGC	6 cut(s)	407, 582, 687, 690, 717, 720
FspBI	CTAG	1 cut(s)	240
GluI	GCNGC	6 cut(s)	407, 582, 687, 690, 717, 720
HaeIII	GGCC	2 cut(s)	145, 663
HapII	CCGG	2 cut(s)	453, 674
Hin1II	CATG	5 cut(s)	184, 203, 332, 440, 464
HincII	GTYRAC	1 cut(s)	526
HindII	GTYRAC	1 cut(s)	526
HinfI	GANTC	5 cut(s)	61, 71, 307, 374, 503
HpaII	CCGG	2 cut(s)	453, 674
HphI	GGTGA	1 cut(s)	284
Hpy166II	GTNNAC	2 cut(s)	507, 526
Hpy188I	TCNGA	3 cut(s)	237, 502, 819
Hpy188III	TCNNGA	4 cut(s)	65, 80, 200, 371
Hpy8I	GTNNAC	2 cut(s)	507, 526
HpyAV	CCTTC	3 cut(s)	77, 134, 748
HpyCH4III	ACNGT	2 cut(s)	643, 730
HpyCH4IV	ACGT	2 cut(s)	30, 290
HpyCH4V	TGCA	8 cut(s)	47, 263, 431, 515, 650, 692, 722, 803
HpyF10VI	GCNNNNNNNGC	4 cut(s)	437, 551, 578, 683
HpyF3I	CTNAG	1 cut(s)	501
HpySE526I	ACGT	2 cut(s)	30, 290
Hsp92II	CATG	5 cut(s)	184, 203, 332, 440, 464
KroI	GCCGGC	1 cut(s)	673
KroNI	GCCGGC	1 cut(s)	675
Ksp22I	TGATCA	2 cut(s)	33, 556
Kzo9I	GATC	4 cut(s)	33, 556, 564, 667
LmnI	GCTCC	1 cut(s)	491
Lsp1109I	GCAGC	6 cut(s)	393, 568, 673, 676, 703, 706
LweI	GCATC	3 cut(s)	393, 731, 790
MaeI	CTAG	1 cut(s)	240
MaeII	ACGT	2 cut(s)	30, 290
MaeIII	GTNAC	2 cut(s)	227, 643
MalI	GATC	4 cut(s)	35, 558, 566, 669
MboI	GATC	4 cut(s)	33, 556, 564, 667
MboII	GAAGA	4 cut(s)	70, 412, 763, 802
MlsI	TGGCCA	1 cut(s)	663
MluCI	AATT	2 cut(s)	53, 415
MluNI	TGGCCA	1 cut(s)	663
MlyI	GAGTC	2 cut(s)	70, 512
MnlI	CCTC	4 cut(s)	87, 415, 550, 647
Mox20I	TGGCCA	1 cut(s)	663
MroNI	GCCGGC	1 cut(s)	673
MroXI	GAANNNNTTC	1 cut(s)	366
MscI	TGGCCA	1 cut(s)	663
MseI	TTAA	5 cut(s)	90, 293, 383, 483, 549
Msp20I	TGGCCA	1 cut(s)	663
MspA1I	CMGCKG	1 cut(s)	149
MspI	CCGG	2 cut(s)	453, 674
MspR9I	CCNGG	2 cut(s)	442, 665
MvaI	CCWGG	2 cut(s)	442, 665
MwoI	GCNNNNNNNGC	4 cut(s)	437, 551, 578, 683
NaeI	GCCGGC	1 cut(s)	675
NdeII	GATC	4 cut(s)	33, 556, 564, 667
NgoMIV	GCCGGC	1 cut(s)	673
NlaIII	CATG	5 cut(s)	184, 203, 332, 440, 464
NlaIV	GGNNCC	1 cut(s)	633
NmeAIII	GCCGAG	1 cut(s)	521
NmuCI	GTSAC	1 cut(s)	643
NspI	RCATGY	3 cut(s)	332, 440, 464
PagI	TCATGA	1 cut(s)	199
PaqCI	CACCTGC	1 cut(s)	563
PciI	ACATGT	1 cut(s)	328
PdiI	GCCGGC	1 cut(s)	675
PdmI	GAANNNNTTC	1 cut(s)	366
PfeI	GAWTC	3 cut(s)	71, 307, 374
PflMI	CCANNNNNTGG	1 cut(s)	317
PkrI	GCNGC	6 cut(s)	408, 583, 688, 691, 718, 721
PleI	GAGTC	2 cut(s)	69, 511
PpsI	GAGTC	2 cut(s)	69, 511
PscI	ACATGT	1 cut(s)	328
Psp6I	CCWGG	2 cut(s)	440, 663
PspGI	CCWGG	2 cut(s)	440, 663
PspN4I	GGNNCC	1 cut(s)	633
PspPI	GGNCC	2 cut(s)	143, 631
PstI	CTGCAG	1 cut(s)	694
PstNI	CAGNNNCTG	1 cut(s)	647
PvuII	CAGCTG	1 cut(s)	149
RsaI	GTAC	2 cut(s)	627, 742
RsaNI	GTAC	2 cut(s)	626, 741
SaqAI	TTAA	5 cut(s)	90, 293, 383, 483, 549
SatI	GCNGC	6 cut(s)	407, 582, 687, 690, 717, 720
Sau3AI	GATC	4 cut(s)	33, 556, 564, 667
Sau96I	GGNCC	2 cut(s)	143, 631
SchI	GAGTC	2 cut(s)	70, 512
ScrFI	CCNGG	2 cut(s)	442, 665
SetI	ASST	9 cut(s)	33, 151, 229, 293, 496, 542, 577, 688, 763
SfaNI	GCATC	3 cut(s)	393, 731, 790
SfcI	CTRYAG	2 cut(s)	690, 729
SinI	GGWCC	1 cut(s)	631
SmlI	CTYRAG	1 cut(s)	410
SmoI	CTYRAG	1 cut(s)	410
Sse9I	AATT	2 cut(s)	53, 415
SspMI	CTAG	1 cut(s)	240
StyD4I	CCNGG	2 cut(s)	440, 663
TaaI	ACNGT	2 cut(s)	643, 730
TaiI	ACGT	2 cut(s)	33, 293
TaqI	TCGA	1 cut(s)	798
TasI	AATT	2 cut(s)	53, 415
TfiI	GAWTC	3 cut(s)	71, 307, 374
Tru1I	TTAA	5 cut(s)	90, 293, 383, 483, 549
Tru9I	TTAA	5 cut(s)	90, 293, 383, 483, 549
TscAI	CASTG	5 cut(s)	522, 597, 652, 699, 753
TseFI	GTSAC	1 cut(s)	643
TseI	GCWGC	6 cut(s)	406, 581, 686, 689, 716, 719
Tsp45I	GTSAC	1 cut(s)	643
TspDTI	ATGAA	2 cut(s)	197, 402
TspGWI	ACGGA	1 cut(s)	613
TspRI	CASTG	5 cut(s)	522, 597, 652, 699, 753
Van91I	CCANNNNNTGG	1 cut(s)	317
VpaK11BI	GGWCC	1 cut(s)	631
XagI	CCTNNNNNAGG	1 cut(s)	81
XceI	RCATGY	3 cut(s)	332, 440, 464
XmiI	GTMKAC	1 cut(s)	506
XmnI	GAANNNNTTC	1 cut(s)	366
XspI	CTAG	1 cut(s)	240

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.