Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr12

Orthogroup ID

OG0006095

Physical Location & Seq

Genomic Coordinates Reverse (-)

15562143 .. 15566319

Gene Structure 4177 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD12G1099900.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 795 bp

ATGGCTACGAATGAAAATCTCCCACCAAATGTAATTAAGCAACTTGCGAAGGAATTGAAGAGTCTTGATGAATCCCCTCCTGAAGGCATTCAAGTTGGGCTTAACGATGATGATTTTTCAATCATATATGCTGATATTGAAGGGCCAGCTGGCACTCCTTATGAGAATGGTGTTTTCCACATGAAGTTGTTATTGTCTAGGGACTTTCCGCACTCTCCTCCTAAAGGCTACTTCCTGACGAAGATTTTCCATCCAAACATTGCGACTAACGGTGAGATTTGTGTCAACACCTTGAAAAAGGATTGGAATCCAAGTCTTGGATTACGACATGTTCTGATTGTAGTTAGATGTCTATTGATTGAACCATTTCCAGAATCAGCTTTGAATGAACAGGCAGGCAAGATGCTCCTTGAAAATTATGAGGAGTATGCAAGACATGCAAGGCTTTATACTGGAATCCATGCTAAGCCAAAACACAAGTTTAAAACAGGAGCTATTTCAGAGTCGACAACTGCACTGAACGTTGATCAAACTAACACTTTGACACTTAATGCTGATCAAAAGAACACAGCACCCGGTGCTGCTTTGCTGGTGATCTCTGCATCCCCATCACTACTGGCACCTAGCACAGTCGCCACTAGAGGAAATGGTCAGGATCAGGCACCCGTTGTAGCTCCAATGGAGACGGGAGTAGGTGGGTCTGCTACTACGGTGAGGAAGGAAGGTGGATTGACAAAAGCGCAGGTAGAAAAGAAGAAAATAGATGCGAGAAAGAAGAGTTTGAAGAGATTATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000209 GO:0003674 GO:0003824 GO:0004842 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0006464 GO:0006508 GO:0006511 GO:0006807 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009987 GO:0016567 GO:0016740 GO:0019538 GO:0019787 GO:0019899 GO:0019941 GO:0030163 GO:0031625 GO:0032446 GO:0036211 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0043632 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0044389 GO:0044424 GO:0044464 GO:0051603 GO:0061630 GO:0061659 GO:0070647 GO:0071704 GO:0140096 GO:1901564 GO:1901565 GO:1901575

KEGG Pathways

Metabolic & Signaling

ko04120 map04120

Pfam Domains

Protein Families

UQ_con

Protein Analysis

265

Amino Acids

28.66

Weight (kDa)

8.71

Isoelectric Point (pI)

35.1

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
UQ_con	PF00179	15 - 150	5.1e-39	Ubiquitin-conjugating enzyme

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0006095)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G05080 AT5G05080 AT5G05080 AT5G05080
fragaria_vesca	FvH4_1g29560 FvH4_1g29560 FvH4_1g29560
malus_domestica	MD12G1099900.v1.1 MD14G1093100.v1.1
prunus_persica	Prupe.7G024400_v2.0.a1 Prupe.7G024400_v2.0.a1 Prupe.7G024400_v2.0.a1
pyrus_communis	pycom12g09370 pycom14g09040
rosa_chinensis	RchiOBHm_Chr3g0495201
rosa_laevigata	RLG00000022639
rosa_multiflora	Rmu_sc0002943.1_g000025
rosa_roxburghii	Rroxscaffold_6G00390700
rosa_rugosa	Rorug03G0270100 Rorug03G0270200 Rorug03G0270200 Rorug03G0270300 Rorug03G0270300
rosa_samantha	Rh3AG319600 Rh3CG351600 Rh3DG353700
rosa_wichuraiana	Rw3G027910

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	733
AccB1I	GGYRCC	2 cut(s)	619, 661
AccB7I	CCANNNNNTGG	1 cut(s)	317
AccI	GTMKAC	1 cut(s)	506
AciI	CCGC	1 cut(s)	209
AclI	AACGTT	1 cut(s)	522
AclWI	GGATC	1 cut(s)	663
AcuI	CTGAAG	1 cut(s)	102
AdeI	CACNNNGTG	1 cut(s)	578
AfiI	CCNNNNNNNGG	3 cut(s)	83, 224, 317
AflIII	ACRYGT	1 cut(s)	328
AgsI	TTSAA	9 cut(s)	58, 92, 120, 140, 295, 362, 385, 413, 784
AluBI	AGCT	4 cut(s)	149, 380, 494, 674
AluI	AGCT	4 cut(s)	149, 380, 494, 674
Alw26I	GTCTC	1 cut(s)	677
AlwI	GGATC	1 cut(s)	663
AoxI	GGCC	1 cut(s)	143
ApeKI	GCWGC	1 cut(s)	581
Asp700I	GAANNNNTTC	3 cut(s)	87, 245, 366
AspLEI	GCGC	1 cut(s)	742
AspS9I	GGNCC	1 cut(s)	143
AsuC2I	CCSGG	1 cut(s)	576
AsuHPI	GGTGA	3 cut(s)	284, 604, 724
BanI	GGYRCC	2 cut(s)	619, 661
BbvI	GCAGC	1 cut(s)	568
BccI	CCATC	2 cut(s)	258, 616
BclI	TGATCA	2 cut(s)	526, 556
BcnI	CCSGG	1 cut(s)	576
BcoDI	GTCTC	1 cut(s)	677
BfaI	CTAG	3 cut(s)	198, 624, 639
BfuAI	ACCTGC	1 cut(s)	733
BisI	GCNGC	1 cut(s)	582
BlpI	GCTNAGC	1 cut(s)	465
BlsI	GCNGC	1 cut(s)	583
Bme1390I	CCNGG	1 cut(s)	576
BmgT120I	GGNCC	1 cut(s)	143
BmiI	GGNNCC	2 cut(s)	621, 663
BmrFI	CCNGG	1 cut(s)	576
BmsI	GCATC	3 cut(s)	393, 611, 754
Bpu1102I	GCTNAGC	1 cut(s)	465
BpuMI	CCSGG	1 cut(s)	576
BsaBI	GATNNNNATC	1 cut(s)	306
Bsc4I	CCNNNNNNNGG	3 cut(s)	83, 224, 317
Bse1I	ACTGG	2 cut(s)	457, 621
Bse3DI	GCAATG	1 cut(s)	258
Bse8I	GATNNNNATC	1 cut(s)	306
BseGI	GGATG	2 cut(s)	250, 602
BseJI	GATNNNNATC	1 cut(s)	306
BseLI	CCNNNNNNNGG	3 cut(s)	83, 224, 317
BseMI	GCAATG	1 cut(s)	258
BseNI	ACTGG	2 cut(s)	457, 621
BseRI	GAGGAG	2 cut(s)	207, 437
BseXI	GCAGC	1 cut(s)	568
BsgI	GTGCAG	1 cut(s)	498
BshFI	GGCC	1 cut(s)	145
BshNI	GGYRCC	2 cut(s)	619, 661
BsiSI	CCGG	1 cut(s)	576
BslFI	GGGAC	1 cut(s)	215
BslI	CCNNNNNNNGG	3 cut(s)	83, 224, 317
BsmAI	GTCTC	1 cut(s)	677
BsmBI	CGTCTC	1 cut(s)	677
BsmFI	GGGAC	1 cut(s)	215
BsmI	GAATGC	1 cut(s)	87
BsnI	GGCC	1 cut(s)	145
Bsp143I	GATC	4 cut(s)	526, 556, 594, 655
Bsp1720I	GCTNAGC	1 cut(s)	465
BspACI	CCGC	1 cut(s)	209
BspANI	GGCC	1 cut(s)	145
BspLI	GGNNCC	2 cut(s)	621, 663
BspMI	ACCTGC	1 cut(s)	733
BspPI	GGATC	1 cut(s)	663
BspT107I	GGYRCC	2 cut(s)	619, 661
BsrDI	GCAATG	1 cut(s)	258
BsrI	ACTGG	2 cut(s)	457, 621
BssMI	GATC	4 cut(s)	526, 556, 594, 655
Bst4CI	ACNGT	3 cut(s)	272, 631, 712
Bst6I	CTCTTC	3 cut(s)	53, 770, 779
BstAPI	GCANNNNNTGC	2 cut(s)	437, 578
BstC8I	GCNNGC	3 cut(s)	147, 151, 397
BstDEI	CTNAG	1 cut(s)	465
BstENI	CCTNNNNNAGG	2 cut(s)	81, 222
BstF5I	GGATG	2 cut(s)	250, 602
BstHHI	GCGC	1 cut(s)	742
BstKTI	GATC	4 cut(s)	529, 559, 597, 658
BstMAI	GTCTC	1 cut(s)	677
BstMBI	GATC	4 cut(s)	526, 556, 594, 655
BstMWI	GCNNNNNNNGC	2 cut(s)	437, 578
BstNSI	RCATGY	2 cut(s)	332, 440
BstSCI	CCNGG	1 cut(s)	574
BstV1I	GCAGC	1 cut(s)	568
BsuRI	GGCC	1 cut(s)	145
BtsCI	GGATG	2 cut(s)	250, 602
BtsIMutI	CAGTG	1 cut(s)	515
BveI	ACCTGC	1 cut(s)	733
Cac8I	GCNNGC	3 cut(s)	147, 151, 397
CfoI	GCGC	1 cut(s)	742
Cfr13I	GGNCC	1 cut(s)	143
CviAII	CATG	4 cut(s)	181, 329, 437, 461
DdeI	CTNAG	1 cut(s)	465
DpnI	GATC	4 cut(s)	528, 558, 596, 657
DpnII	GATC	4 cut(s)	526, 556, 594, 655
DraI	TTTAAA	1 cut(s)	484
DraIII	CACNNNGTG	1 cut(s)	578
Eam1104I	CTCTTC	3 cut(s)	53, 770, 779
EarI	CTCTTC	3 cut(s)	53, 770, 779
Eco57I	CTGAAG	1 cut(s)	102
EcoNI	CCTNNNNNAGG	2 cut(s)	81, 222
Esp3I	CGTCTC	1 cut(s)	677
FaeI	CATG	4 cut(s)	184, 332, 440, 464
FalI	AAGNNNNNCTT	2 cut(s)	84, 116
FaqI	GGGAC	1 cut(s)	215
FatI	CATG	4 cut(s)	180, 328, 436, 460
FbaI	TGATCA	2 cut(s)	526, 556
FblI	GTMKAC	1 cut(s)	506
Fnu4HI	GCNGC	1 cut(s)	582
FokI	GGATG	2 cut(s)	237, 589
Fsp4HI	GCNGC	1 cut(s)	582
FspBI	CTAG	3 cut(s)	198, 624, 639
GlaI	GCGC	1 cut(s)	741
GluI	GCNGC	1 cut(s)	582
HaeIII	GGCC	1 cut(s)	145
HapII	CCGG	1 cut(s)	576
HhaI	GCGC	1 cut(s)	742
Hin1II	CATG	4 cut(s)	184, 332, 440, 464
Hin6I	GCGC	1 cut(s)	740
HinP1I	GCGC	1 cut(s)	740
HincII	GTYRAC	2 cut(s)	286, 507
HindII	GTYRAC	2 cut(s)	286, 507
HinfI	GANTC	6 cut(s)	61, 71, 307, 374, 456, 503
HpaII	CCGG	1 cut(s)	576
HphI	GGTGA	3 cut(s)	284, 604, 724
Hpy166II	GTNNAC	2 cut(s)	286, 507
Hpy188I	TCNGA	2 cut(s)	336, 502
Hpy188III	TCNNGA	5 cut(s)	65, 80, 235, 371, 653
Hpy8I	GTNNAC	2 cut(s)	286, 507
HpyAV	CCTTC	5 cut(s)	43, 77, 134, 712, 716
HpyCH4III	ACNGT	3 cut(s)	272, 631, 712
HpyCH4IV	ACGT	1 cut(s)	522
HpyCH4V	TGCA	4 cut(s)	431, 440, 515, 602
HpyF10VI	GCNNNNNNNGC	2 cut(s)	437, 578
HpyF3I	CTNAG	1 cut(s)	465
HpySE526I	ACGT	1 cut(s)	522
Hsp92II	CATG	4 cut(s)	184, 332, 440, 464
HspAI	GCGC	1 cut(s)	740
Ksp22I	TGATCA	2 cut(s)	526, 556
Kzo9I	GATC	4 cut(s)	526, 556, 594, 655
LmnI	GCTCC	3 cut(s)	411, 491, 679
Lsp1109I	GCAGC	1 cut(s)	568
LweI	GCATC	3 cut(s)	393, 611, 754
MaeI	CTAG	3 cut(s)	198, 624, 639
MaeII	ACGT	1 cut(s)	522
MalI	GATC	4 cut(s)	528, 558, 596, 657
MboI	GATC	4 cut(s)	526, 556, 594, 655
MboII	GAAGA	4 cut(s)	70, 253, 766, 787
MluCI	AATT	3 cut(s)	33, 53, 415
MlyI	GAGTC	2 cut(s)	70, 512
MnlI	CCTC	5 cut(s)	87, 228, 415, 635, 708
MroXI	GAANNNNTTC	3 cut(s)	87, 245, 366
MseI	TTAA	4 cut(s)	36, 102, 483, 549
MspA1I	CMGCKG	1 cut(s)	149
MspI	CCGG	1 cut(s)	576
MspR9I	CCNGG	1 cut(s)	576
Mva1269I	GAATGC	1 cut(s)	87
MwoI	GCNNNNNNNGC	2 cut(s)	437, 578
NciI	CCSGG	1 cut(s)	576
NdeII	GATC	4 cut(s)	526, 556, 594, 655
NlaIII	CATG	4 cut(s)	184, 332, 440, 464
NlaIV	GGNNCC	2 cut(s)	621, 663
NspI	RCATGY	2 cut(s)	332, 440
PciI	ACATGT	1 cut(s)	328
PctI	GAATGC	1 cut(s)	87
PdmI	GAANNNNTTC	3 cut(s)	87, 245, 366
PfeI	GAWTC	4 cut(s)	71, 307, 374, 456
PflMI	CCANNNNNTGG	1 cut(s)	317
PkrI	GCNGC	1 cut(s)	583
PleI	GAGTC	2 cut(s)	69, 511
PpsI	GAGTC	2 cut(s)	69, 511
PscI	ACATGT	1 cut(s)	328
Psp1406I	AACGTT	1 cut(s)	522
PspN4I	GGNNCC	2 cut(s)	621, 663
PspPI	GGNCC	1 cut(s)	143
PvuII	CAGCTG	1 cut(s)	149
SalI	GTCGAC	1 cut(s)	505
SaqAI	TTAA	4 cut(s)	36, 102, 483, 549
SatI	GCNGC	1 cut(s)	582
Sau3AI	GATC	4 cut(s)	526, 556, 594, 655
Sau96I	GGNCC	1 cut(s)	143
SchI	GAGTC	2 cut(s)	70, 512
ScrFI	CCNGG	1 cut(s)	576
SfaNI	GCATC	3 cut(s)	393, 611, 754
Sse9I	AATT	3 cut(s)	33, 53, 415
SsiI	CCGC	1 cut(s)	209
SspMI	CTAG	3 cut(s)	198, 624, 639
StyD4I	CCNGG	1 cut(s)	574
TaaI	ACNGT	3 cut(s)	272, 631, 712
TaiI	ACGT	1 cut(s)	525
TaqI	TCGA	1 cut(s)	506
TasI	AATT	3 cut(s)	33, 53, 415
TfiI	GAWTC	4 cut(s)	71, 307, 374, 456
Tru1I	TTAA	4 cut(s)	36, 102, 483, 549
Tru9I	TTAA	4 cut(s)	36, 102, 483, 549
TscAI	CASTG	1 cut(s)	522
TseI	GCWGC	1 cut(s)	581
TspDTI	ATGAA	4 cut(s)	27, 84, 197, 402
TspRI	CASTG	1 cut(s)	522
Van91I	CCANNNNNTGG	1 cut(s)	317
XagI	CCTNNNNNAGG	2 cut(s)	81, 222
XceI	RCATGY	2 cut(s)	332, 440
XmiI	GTMKAC	1 cut(s)	506
XmnI	GAANNNNTTC	3 cut(s)	87, 245, 366
XspI	CTAG	3 cut(s)	198, 624, 639

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.