Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr14

Orthogroup ID

OG0006095

Physical Location & Seq

Genomic Coordinates Forward (+)

10539102 .. 10540534

Gene Structure 1433 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom14g09040.5

Sequence Viewer

CDS Protein Promoter (2k)

Length: 831 bp

ATGTTAACATTTCAGGCTACGAATGAAAATCTCCCACCAAATGTAATTAAGCAACTTGCAAAGGAATTGAAGAGTCTTGATGAATCCCCTCCTGAAGGCATAAAAGTTGGTGTTAACGATGATGATTTTTCAATCATATATGCTGATATTGAAGGGCCAGCTGGTACTCCTTACGAGAATGGTGTTTTCCGCATGAAGCTGGTATTGTCTCGGGACTTTCCACACTCTCCTCCTAAAGGCTACTTCCTCACTAAGATTTTCCATCCAAACATTGCGACTAACGGTGAGATTTGTGTCAACACCTTGAAAAAAGATTGGAATCCAAGTCTTGGATTGCGACATGTTCTGATTGTAGTCAGATGTCTATTGATTGAACCATTTCCAGAATCAGCGTTGAATGAACAGGCAGGCAAGATGCTGCTTGAAAATTATGAGGAGTATGCAAGACATGCAAGGCTTTATACTGGAATCCATGCAAAGCCGAAACCTAAGTTTAAAACGGGAGCTATTTCAGAGTCGACAACTGCACTGAATGTTGAACAAACTAACACTTCGACACTGAATGCTGATCAAAAGAACACAGCACCTGGTGCTGCCTTGCCAGTGATTTCTGCATCCCCATCCCCACTGGCGCCTATTACAGTCACCACTAGAGGAAACGGGCAGGATCAGCCAGCCGTTGTAGCTCCAATGGAGACTGGAGTAAGTGGGTCTGCTGCCGCTGCATCAGCAGCAGCAACTACTACAGTGAGGAAAGATGGCGGATTGACAAAAGCACAGGCGGACAAGAAGAAAATAGATGCGAGAAAGAAGAGTTTGAAGAGATTATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000209 GO:0003674 GO:0003824 GO:0004842 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0006464 GO:0006508 GO:0006511 GO:0006807 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009987 GO:0016567 GO:0016740 GO:0019538 GO:0019787 GO:0019899 GO:0019941 GO:0030163 GO:0031625 GO:0032446 GO:0036211 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0043632 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0044389 GO:0044424 GO:0044464 GO:0051603 GO:0061630 GO:0061659 GO:0070647 GO:0071704 GO:0140096 GO:1901564 GO:1901565 GO:1901575

KEGG Pathways

Metabolic & Signaling

ko04120 map04120

Pfam Domains

Protein Families

UQ_con

Protein Analysis

277

Amino Acids

29.7

Weight (kDa)

9.05

Isoelectric Point (pI)

35.27

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006095)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G05080 AT5G05080 AT5G05080 AT5G05080
fragaria_vesca	FvH4_1g29560 FvH4_1g29560 FvH4_1g29560
malus_domestica	MD12G1099900.v1.1 MD14G1093100.v1.1
prunus_persica	Prupe.7G024400_v2.0.a1 Prupe.7G024400_v2.0.a1 Prupe.7G024400_v2.0.a1
pyrus_communis	pycom12g09370 pycom14g09040
rosa_chinensis	RchiOBHm_Chr3g0495201
rosa_laevigata	RLG00000022639
rosa_multiflora	Rmu_sc0002943.1_g000025
rosa_roxburghii	Rroxscaffold_6G00390700
rosa_rugosa	Rorug03G0270100 Rorug03G0270200 Rorug03G0270200 Rorug03G0270300 Rorug03G0270300
rosa_samantha	Rh3AG319600 Rh3CG351600 Rh3DG353700
rosa_wichuraiana	Rw3G027910

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	631
AccB7I	CCANNNNNTGG	1 cut(s)	329
AccI	GTMKAC	1 cut(s)	518
AciI	CCGC	4 cut(s)	190, 720, 762, 782
AclWI	GGATC	1 cut(s)	675
AcuI	CTGAAG	1 cut(s)	114
AcyI	GRCGYC	1 cut(s)	632
AdeI	CACNNNGTG	1 cut(s)	590
AfaI	GTAC	1 cut(s)	166
AfiI	CCNNNNNNNGG	3 cut(s)	95, 236, 329
AflIII	ACRYGT	1 cut(s)	340
AgsI	TTSAA	9 cut(s)	70, 132, 152, 307, 374, 397, 425, 539, 820
AjnI	CCWGG	1 cut(s)	586
AluBI	AGCT	4 cut(s)	161, 199, 506, 686
AluI	AGCT	4 cut(s)	161, 199, 506, 686
Alw26I	GTCTC	2 cut(s)	213, 689
AlwI	GGATC	1 cut(s)	675
AlwNI	CAGNNNCTG	1 cut(s)	587
Ama87I	CYCGRG	1 cut(s)	210
AoxI	GGCC	1 cut(s)	155
ApeKI	GCWGC	6 cut(s)	418, 593, 716, 722, 731, 734
Asp700I	GAANNNNTTC	1 cut(s)	378
AspLEI	GCGC	1 cut(s)	634
AspS9I	GGNCC	1 cut(s)	155
AsuHPI	GGTGA	2 cut(s)	296, 637
AvaI	CYCGRG	1 cut(s)	210
BanI	GGYRCC	1 cut(s)	631
BbvI	GCAGC	6 cut(s)	405, 580, 703, 709, 743, 746
BccI	CCATC	3 cut(s)	270, 628, 752
BceAI	ACGGC	1 cut(s)	662
BciT130I	CCWGG	1 cut(s)	588
BclI	TGATCA	1 cut(s)	568
BcoDI	GTCTC	2 cut(s)	213, 689
BfaI	CTAG	1 cut(s)	651
BfmI	CTRYAG	1 cut(s)	744
BfoI	RGCGCY	1 cut(s)	635
BisI	GCNGC	7 cut(s)	419, 594, 717, 720, 723, 732, 735
BlsI	GCNGC	7 cut(s)	420, 595, 718, 721, 724, 733, 736
Bme1390I	CCNGG	1 cut(s)	588
BmeT110I	CYCGRG	1 cut(s)	210
BmgT120I	GGNCC	1 cut(s)	155
BmiI	GGNNCC	1 cut(s)	633
BmrFI	CCNGG	1 cut(s)	588
BmsI	GCATC	4 cut(s)	405, 623, 734, 790
BpmI	CTGGAG	1 cut(s)	720
BsaBI	GATNNNNATC	1 cut(s)	318
BsaHI	GRCGYC	1 cut(s)	632
Bsc4I	CCNNNNNNNGG	3 cut(s)	95, 236, 329
Bse1I	ACTGG	4 cut(s)	469, 602, 633, 703
Bse3DI	GCAATG	1 cut(s)	270
Bse8I	GATNNNNATC	1 cut(s)	318
BseBI	CCWGG	1 cut(s)	588
BseGI	GGATG	3 cut(s)	262, 614, 620
BseJI	GATNNNNATC	1 cut(s)	318
BseLI	CCNNNNNNNGG	3 cut(s)	95, 236, 329
BseMI	GCAATG	1 cut(s)	270
BseNI	ACTGG	4 cut(s)	469, 602, 633, 703
BseRI	GAGGAG	2 cut(s)	219, 449
BseXI	GCAGC	6 cut(s)	405, 580, 703, 709, 743, 746
BsgI	GTGCAG	1 cut(s)	510
BshFI	GGCC	1 cut(s)	157
BshNI	GGYRCC	1 cut(s)	631
BsiHKCI	CYCGRG	1 cut(s)	210
BslFI	GGGAC	1 cut(s)	227
BslI	CCNNNNNNNGG	3 cut(s)	95, 236, 329
BsmAI	GTCTC	2 cut(s)	213, 689
BsmFI	GGGAC	1 cut(s)	227
BsmI	GAATGC	1 cut(s)	568
BsnI	GGCC	1 cut(s)	157
BsoBI	CYCGRG	1 cut(s)	210
Bsp143I	GATC	2 cut(s)	568, 667
BspACI	CCGC	4 cut(s)	190, 720, 762, 782
BspANI	GGCC	1 cut(s)	157
BspLI	GGNNCC	1 cut(s)	633
BspPI	GGATC	1 cut(s)	675
BspT107I	GGYRCC	1 cut(s)	631
BsrDI	GCAATG	1 cut(s)	270
BsrI	ACTGG	4 cut(s)	469, 602, 633, 703
BssMI	GATC	2 cut(s)	568, 667
BssNI	GRCGYC	1 cut(s)	632
Bst2UI	CCWGG	1 cut(s)	588
Bst4CI	ACNGT	3 cut(s)	284, 643, 748
Bst6I	CTCTTC	3 cut(s)	65, 806, 815
BstACI	GRCGYC	1 cut(s)	632
BstAPI	GCANNNNNTGC	2 cut(s)	449, 590
BstC8I	GCNNGC	3 cut(s)	159, 409, 675
BstDEI	CTNAG	2 cut(s)	252, 489
BstENI	CCTNNNNNAGG	2 cut(s)	93, 234
BstF5I	GGATG	3 cut(s)	262, 614, 620
BstH2I	RGCGCY	1 cut(s)	635
BstHHI	GCGC	1 cut(s)	634
BstKTI	GATC	2 cut(s)	571, 670
BstMAI	GTCTC	2 cut(s)	213, 689
BstMBI	GATC	2 cut(s)	568, 667
BstMWI	GCNNNNNNNGC	7 cut(s)	449, 590, 670, 683, 722, 728, 731
BstNI	CCWGG	1 cut(s)	588
BstNSI	RCATGY	2 cut(s)	344, 452
BstSCI	CCNGG	1 cut(s)	586
BstSFI	CTRYAG	1 cut(s)	744
BstV1I	GCAGC	6 cut(s)	405, 580, 703, 709, 743, 746
BsuRI	GGCC	1 cut(s)	157
BtsCI	GGATG	3 cut(s)	262, 614, 620
BtsIMutI	CAGTG	5 cut(s)	527, 557, 609, 626, 753
Cac8I	GCNNGC	3 cut(s)	159, 409, 675
CaiI	CAGNNNCTG	1 cut(s)	587
CfoI	GCGC	1 cut(s)	634
Cfr13I	GGNCC	1 cut(s)	155
CsiI	ACCWGGT	1 cut(s)	586
Csp6I	GTAC	1 cut(s)	165
CviAII	CATG	4 cut(s)	193, 341, 449, 473
CviQI	GTAC	1 cut(s)	165
DdeI	CTNAG	2 cut(s)	252, 489
DinI	GGCGCC	1 cut(s)	633
DpnI	GATC	2 cut(s)	570, 669
DpnII	GATC	2 cut(s)	568, 667
DraI	TTTAAA	1 cut(s)	496
DraIII	CACNNNGTG	1 cut(s)	590
Eam1104I	CTCTTC	3 cut(s)	65, 806, 815
EarI	CTCTTC	3 cut(s)	65, 806, 815
EciI	GGCGGA	2 cut(s)	777, 797
Eco57I	CTGAAG	1 cut(s)	114
Eco88I	CYCGRG	1 cut(s)	210
EcoNI	CCTNNNNNAGG	2 cut(s)	93, 234
EcoRII	CCWGG	1 cut(s)	586
EgeI	GGCGCC	1 cut(s)	633
EheI	GGCGCC	1 cut(s)	633
FaeI	CATG	4 cut(s)	196, 344, 452, 476
FaqI	GGGAC	1 cut(s)	227
FatI	CATG	4 cut(s)	192, 340, 448, 472
FbaI	TGATCA	1 cut(s)	568
FblI	GTMKAC	1 cut(s)	518
Fnu4HI	GCNGC	7 cut(s)	419, 594, 717, 720, 723, 732, 735
FokI	GGATG	3 cut(s)	249, 601, 607
Fsp4HI	GCNGC	7 cut(s)	419, 594, 717, 720, 723, 732, 735
FspBI	CTAG	1 cut(s)	651
GlaI	GCGC	1 cut(s)	633
GluI	GCNGC	7 cut(s)	419, 594, 717, 720, 723, 732, 735
GsuI	CTGGAG	1 cut(s)	720
HaeII	RGCGCY	1 cut(s)	635
HaeIII	GGCC	1 cut(s)	157
HhaI	GCGC	1 cut(s)	634
Hin1I	GRCGYC	1 cut(s)	632
Hin1II	CATG	4 cut(s)	196, 344, 452, 476
Hin6I	GCGC	1 cut(s)	632
HinP1I	GCGC	1 cut(s)	632
HincII	GTYRAC	4 cut(s)	6, 115, 298, 519
HindII	GTYRAC	4 cut(s)	6, 115, 298, 519
HinfI	GANTC	6 cut(s)	73, 83, 319, 386, 468, 515
HpaI	GTTAAC	2 cut(s)	6, 115
HphI	GGTGA	2 cut(s)	296, 637
Hpy166II	GTNNAC	4 cut(s)	6, 115, 298, 519
Hpy188I	TCNGA	3 cut(s)	348, 359, 514
Hpy188III	TCNNGA	4 cut(s)	77, 92, 212, 383
Hpy8I	GTNNAC	4 cut(s)	6, 115, 298, 519
HpyAV	CCTTC	2 cut(s)	89, 146
HpyCH4III	ACNGT	3 cut(s)	284, 643, 748
HpyCH4V	TGCA	7 cut(s)	59, 443, 452, 476, 527, 614, 725
HpyF10VI	GCNNNNNNNGC	7 cut(s)	449, 590, 670, 683, 722, 728, 731
HpyF3I	CTNAG	2 cut(s)	252, 489
Hsp92I	GRCGYC	1 cut(s)	632
Hsp92II	CATG	4 cut(s)	196, 344, 452, 476
HspAI	GCGC	1 cut(s)	632
KasI	GGCGCC	1 cut(s)	631
Ksp22I	TGATCA	1 cut(s)	568
KspAI	GTTAAC	2 cut(s)	6, 115
Kzo9I	GATC	2 cut(s)	568, 667
LmnI	GCTCC	2 cut(s)	503, 691
Lsp1109I	GCAGC	6 cut(s)	405, 580, 703, 709, 743, 746
LweI	GCATC	4 cut(s)	405, 623, 734, 790
MabI	ACCWGGT	1 cut(s)	586
MaeI	CTAG	1 cut(s)	651
MaeIII	GTNAC	1 cut(s)	643
MalI	GATC	2 cut(s)	570, 669
MboI	GATC	2 cut(s)	568, 667
MboII	GAAGA	3 cut(s)	82, 802, 823
MluCI	AATT	3 cut(s)	45, 65, 427
Mly113I	GGCGCC	1 cut(s)	632
MlyI	GAGTC	2 cut(s)	82, 524
MnlI	CCTC	6 cut(s)	99, 240, 257, 427, 647, 744
MroXI	GAANNNNTTC	1 cut(s)	378
MseI	TTAA	4 cut(s)	5, 48, 114, 495
MspA1I	CMGCKG	2 cut(s)	161, 722
MspR9I	CCNGG	1 cut(s)	588
Mva1269I	GAATGC	1 cut(s)	568
MvaI	CCWGG	1 cut(s)	588
MwoI	GCNNNNNNNGC	7 cut(s)	449, 590, 670, 683, 722, 728, 731
NarI	GGCGCC	1 cut(s)	632
NdeII	GATC	2 cut(s)	568, 667
NlaIII	CATG	4 cut(s)	196, 344, 452, 476
NlaIV	GGNNCC	1 cut(s)	633
NmuCI	GTSAC	1 cut(s)	643
NspI	RCATGY	2 cut(s)	344, 452
PciI	ACATGT	1 cut(s)	340
PctI	GAATGC	1 cut(s)	568
PdmI	GAANNNNTTC	1 cut(s)	378
PfeI	GAWTC	4 cut(s)	83, 319, 386, 468
PflMI	CCANNNNNTGG	1 cut(s)	329
PkrI	GCNGC	7 cut(s)	420, 595, 718, 721, 724, 733, 736
PleI	GAGTC	2 cut(s)	81, 523
PluTI	GGCGCC	1 cut(s)	635
PpsI	GAGTC	2 cut(s)	81, 523
PscI	ACATGT	1 cut(s)	340
Psp6I	CCWGG	1 cut(s)	586
PspGI	CCWGG	1 cut(s)	586
PspN4I	GGNNCC	1 cut(s)	633
PspPI	GGNCC	1 cut(s)	155
PstNI	CAGNNNCTG	1 cut(s)	587
PvuII	CAGCTG	1 cut(s)	161
RsaI	GTAC	1 cut(s)	166
RsaNI	GTAC	1 cut(s)	165
SalI	GTCGAC	1 cut(s)	517
SaqAI	TTAA	4 cut(s)	5, 48, 114, 495
SatI	GCNGC	7 cut(s)	419, 594, 717, 720, 723, 732, 735
Sau3AI	GATC	2 cut(s)	568, 667
Sau96I	GGNCC	1 cut(s)	155
SchI	GAGTC	2 cut(s)	82, 524
ScrFI	CCNGG	1 cut(s)	588
SetI	ASST	7 cut(s)	163, 201, 305, 490, 508, 589, 688
SexAI	ACCWGGT	1 cut(s)	586
SfaNI	GCATC	4 cut(s)	405, 623, 734, 790
SfcI	CTRYAG	1 cut(s)	744
SfoI	GGCGCC	1 cut(s)	633
Sse9I	AATT	3 cut(s)	45, 65, 427
SsiI	CCGC	4 cut(s)	190, 720, 762, 782
SspDI	GGCGCC	1 cut(s)	631
SspMI	CTAG	1 cut(s)	651
StyD4I	CCNGG	1 cut(s)	586
TaaI	ACNGT	3 cut(s)	284, 643, 748
TaqI	TCGA	2 cut(s)	518, 554
TasI	AATT	3 cut(s)	45, 65, 427
TauI	GCSGC	1 cut(s)	722
TfiI	GAWTC	4 cut(s)	83, 319, 386, 468
Tru1I	TTAA	4 cut(s)	5, 48, 114, 495
Tru9I	TTAA	4 cut(s)	5, 48, 114, 495
TscAI	CASTG	5 cut(s)	534, 564, 609, 633, 753
TseFI	GTSAC	1 cut(s)	643
TseI	GCWGC	6 cut(s)	418, 593, 716, 722, 731, 734
Tsp45I	GTSAC	1 cut(s)	643
TspDTI	ATGAA	4 cut(s)	39, 96, 209, 414
TspRI	CASTG	5 cut(s)	534, 564, 609, 633, 753
Van91I	CCANNNNNTGG	1 cut(s)	329
XagI	CCTNNNNNAGG	2 cut(s)	93, 234
XceI	RCATGY	2 cut(s)	344, 452
XmiI	GTMKAC	1 cut(s)	518
XmnI	GAANNNNTTC	1 cut(s)	378
XspI	CTAG	1 cut(s)	651

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.