Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr5

Orthogroup ID

OG0006095

Physical Location & Seq

Genomic Coordinates Reverse (-)

5988059 .. 5991869

Gene Structure 3811 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000022639

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1179 bp

ATGCAGCGACGCCTCGTTTCAAATAACTTTGTTTTTATTCCATCTTTTAAATGCAAAATTGACAAAGCGCTCCCTCTCTCTCTCTCTCCCTCTCATACACTCTCTCTCTTCTTCGCATCGCAATCCTTCAAGTCTGAAAGCCCTCAATCATCGCCAACACACTTGAGAGTTTTGTTTTATGAGATAGAGGCGAATTCTCATCTGGGTTTTCTTCCGCCGGAATCTCTGCTTACAGCTGGGCCTAATTCTATCACACTTATCGGTGAAGTTGAAAAGTTTGTAGCACATAACACAGCTAAATTGTTTTTGGTAGCAAAATTTGACGAAGGACATCATTCCTTTATATCCATGGCTACTAACGAAAATCTGCCACCAAACGTGATCAAGCAACTTGCAAAGGAATTGAAGAGTCTTGACGAATCCCCTCCTGAAGGCATTAAAGTTTGCGTGAATGATGACGACTTTTCAATCATATTTGCTGATATTGAAGGGCCAGCTGGCACTCCTTACGAGAATGGTGTTTTTCGCATGAAGTTGTTGTTATCTCATGACTTTCCACACTCTCCCCCCAAAGGTTACTTTCTGACTAGGATTTTCCATCCAAACATTGCAAATAATGGTGAGATTTGTGTGAACACGTTAAAAAAAGATTGGAATCCAAGTCTTGGATTACGACATGTTCTCATTGTGGTTAGATGTCTGTTGATTGAACCATTTCCAGAATCAGCCTTAAATGAACAAGCAGGGAAGATGCTGCTTGAGAATTATGAGGAATATGCAAGACATGCCAGGCTTTATACCGGAATACATGCCAAGCCAAAACCCAAGTTTAAAACAGGAGCTATTTCAGAGTCTACTACTGCACTGAATGTTGACCAGTCTAACACCTCGGCACTTAATGCTGATCAAAAGATCACGGCAGGTGGTGCTGCTTTGCCACTGCCATCCCCATCCCCAACTCCATCCCCATCCGTACTGGTCCCTTTGACAGTCACTGCAAGAGGACTCGGCCAGGATCAGCCGGCTGTTGTAGCTGCTGCAGTGGAGACAAGAGTTGGTGGGGCTGCTGCATCAACTGTAGCAAGTAGTACGACACTGAAGAAGGAAGCTGGCTTGATAAAAGCACAGGCAGAAAAGAAGAAAATCGATGCAAGAAAGAAAAGTCTGAAGAGACTATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000209 GO:0003674 GO:0003824 GO:0004842 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0006464 GO:0006508 GO:0006511 GO:0006807 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009987 GO:0016567 GO:0016740 GO:0019538 GO:0019787 GO:0019899 GO:0019941 GO:0030163 GO:0031625 GO:0032446 GO:0036211 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0043632 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0044389 GO:0044424 GO:0044464 GO:0051603 GO:0061630 GO:0061659 GO:0070647 GO:0071704 GO:0140096 GO:1901564 GO:1901565 GO:1901575

KEGG Pathways

Metabolic & Signaling

ko04120 map04120

Pfam Domains

Protein Families

UQ_con

Protein Analysis

393

Amino Acids

42.58

Weight (kDa)

8.97

Isoelectric Point (pI)

44.64

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
UQ_con	PF00179	131 - 266	2.4e-38	Ubiquitin-conjugating enzyme

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006095)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G05080 AT5G05080 AT5G05080 AT5G05080
fragaria_vesca	FvH4_1g29560 FvH4_1g29560 FvH4_1g29560
malus_domestica	MD12G1099900.v1.1 MD14G1093100.v1.1
prunus_persica	Prupe.7G024400_v2.0.a1 Prupe.7G024400_v2.0.a1 Prupe.7G024400_v2.0.a1
pyrus_communis	pycom12g09370 pycom14g09040
rosa_chinensis	RchiOBHm_Chr3g0495201
rosa_laevigata	RLG00000022639
rosa_multiflora	Rmu_sc0002943.1_g000025
rosa_roxburghii	Rroxscaffold_6G00390700
rosa_rugosa	Rorug03G0270100 Rorug03G0270200 Rorug03G0270200 Rorug03G0270300 Rorug03G0270300
rosa_samantha	Rh3AG319600 Rh3CG351600 Rh3DG353700
rosa_wichuraiana	Rw3G027910

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	911
Acc36I	ACCTGC	1 cut(s)	911
AccB7I	CCANNNNNTGG	1 cut(s)	665
AccI	GTMKAC	1 cut(s)	854
AciI	CCGC	1 cut(s)	215
AclWI	GGATC	1 cut(s)	1023
AcoI	YGGCCR	1 cut(s)	1009
AcsI	RAATTY	2 cut(s)	193, 317
AcuI	CTGAAG	2 cut(s)	450, 1118
AcyI	GRCGYC	1 cut(s)	10
AfaI	GTAC	2 cut(s)	975, 1090
AfeI	AGCGCT	1 cut(s)	69
AfiI	CCNNNNNNNGG	3 cut(s)	431, 572, 665
AflIII	ACRYGT	2 cut(s)	636, 676
AgsI	TTSAA	7 cut(s)	21, 130, 272, 406, 468, 488, 710
AjnI	CCWGG	2 cut(s)	788, 1011
AluBI	AGCT	6 cut(s)	236, 296, 497, 842, 1034, 1109
AluI	AGCT	6 cut(s)	236, 296, 497, 842, 1034, 1109
Alw26I	GTCTC	2 cut(s)	1040, 1165
AlwI	GGATC	1 cut(s)	1023
AlwNI	CAGNNNCTG	1 cut(s)	995
Aor51HI	AGCGCT	1 cut(s)	69
AoxI	GGCC	3 cut(s)	239, 491, 1009
ApeKI	GCWGC	7 cut(s)	4, 754, 929, 1034, 1037, 1064, 1067
ApoI	RAATTY	2 cut(s)	193, 317
Asp700I	GAANNNNTTC	1 cut(s)	714
AspLEI	GCGC	1 cut(s)	70
AspS9I	GGNCC	3 cut(s)	239, 491, 979
AsuHPI	GGTGA	2 cut(s)	275, 632
AvaII	GGWCC	1 cut(s)	979
BbvI	GCAGC	7 cut(s)	16, 741, 916, 1021, 1024, 1051, 1054
BccI	CCATC	6 cut(s)	49, 606, 952, 958, 970, 976
BceAI	ACGGC	1 cut(s)	933
BciT130I	CCWGG	2 cut(s)	790, 1013
BclI	TGATCA	2 cut(s)	381, 904
BcoDI	GTCTC	2 cut(s)	1040, 1165
BfaI	CTAG	1 cut(s)	588
BfmI	CTRYAG	2 cut(s)	1038, 1077
BfoI	RGCGCY	1 cut(s)	71
BfuAI	ACCTGC	1 cut(s)	911
BisI	GCNGC	7 cut(s)	5, 755, 930, 1035, 1038, 1065, 1068
BlsI	GCNGC	7 cut(s)	6, 756, 931, 1036, 1039, 1066, 1069
Bme1390I	CCNGG	2 cut(s)	790, 1013
Bme18I	GGWCC	1 cut(s)	979
BmgT120I	GGNCC	3 cut(s)	239, 491, 979
BmiI	GGNNCC	1 cut(s)	981
BmrFI	CCNGG	2 cut(s)	790, 1013
BmsI	GCATC	4 cut(s)	125, 741, 1079, 1138
BpuEI	CTTGAG	2 cut(s)	184, 779
Bsa29I	ATCGAT	1 cut(s)	1146
BsaBI	GATNNNNATC	1 cut(s)	654
BsaHI	GRCGYC	1 cut(s)	10
BsaJI	CCNNGG	2 cut(s)	348, 888
BsaWI	WCCGGW	1 cut(s)	800
Bsc4I	CCNNNNNNNGG	3 cut(s)	431, 572, 665
Bse118I	RCCGGY	1 cut(s)	1021
Bse1I	ACTGG	2 cut(s)	877, 981
Bse3DI	GCAATG	1 cut(s)	606
Bse8I	GATNNNNATC	1 cut(s)	654
BseBI	CCWGG	2 cut(s)	790, 1013
BseCI	ATCGAT	1 cut(s)	1146
BseDI	CCNNGG	2 cut(s)	348, 888
BseGI	GGATG	5 cut(s)	598, 944, 950, 962, 968
BseJI	GATNNNNATC	1 cut(s)	654
BseLI	CCNNNNNNNGG	3 cut(s)	431, 572, 665
BseMI	GCAATG	1 cut(s)	606
BseNI	ACTGG	2 cut(s)	877, 981
BseXI	GCAGC	7 cut(s)	16, 741, 916, 1021, 1024, 1051, 1054
BseYI	CCCAGC	1 cut(s)	236
BsgI	GTGCAG	1 cut(s)	846
BshFI	GGCC	3 cut(s)	241, 493, 1011
BshVI	ATCGAT	1 cut(s)	1146
BsiSI	CCGG	3 cut(s)	218, 801, 1022
BslFI	GGGAC	1 cut(s)	965
BslI	CCNNNNNNNGG	3 cut(s)	431, 572, 665
BsmAI	GTCTC	2 cut(s)	1040, 1165
BsmFI	GGGAC	1 cut(s)	965
BsnI	GGCC	3 cut(s)	241, 493, 1011
Bsp143I	GATC	4 cut(s)	381, 904, 912, 1015
Bsp19I	CCATGG	1 cut(s)	348
BspACI	CCGC	1 cut(s)	215
BspANI	GGCC	3 cut(s)	241, 493, 1011
BspDI	ATCGAT	1 cut(s)	1146
BspHI	TCATGA	1 cut(s)	547
BspLI	GGNNCC	1 cut(s)	981
BspMAI	CTGCAG	1 cut(s)	1042
BspMI	ACCTGC	1 cut(s)	911
BspPI	GGATC	1 cut(s)	1023
BsrDI	GCAATG	1 cut(s)	606
BsrFI	RCCGGY	1 cut(s)	1021
BsrI	ACTGG	2 cut(s)	877, 981
BssAI	RCCGGY	1 cut(s)	1021
BssECI	CCNNGG	2 cut(s)	348, 888
BssMI	GATC	4 cut(s)	381, 904, 912, 1015
BssNI	GRCGYC	1 cut(s)	10
BssT1I	CCWWGG	1 cut(s)	348
Bst2UI	CCWGG	2 cut(s)	790, 1013
Bst4CI	ACNGT	2 cut(s)	991, 1078
Bst6I	CTCTTC	3 cut(s)	113, 401, 1163
BstACI	GRCGYC	1 cut(s)	10
BstAPI	GCANNNNNTGC	3 cut(s)	785, 899, 926
BstC8I	GCNNGC	4 cut(s)	495, 499, 1023, 1111
BstDSI	CCRYGG	1 cut(s)	348
BstENI	CCTNNNNNAGG	1 cut(s)	429
BstF5I	GGATG	5 cut(s)	598, 944, 950, 962, 968
BstH2I	RGCGCY	1 cut(s)	71
BstHHI	GCGC	1 cut(s)	70
BstKTI	GATC	4 cut(s)	384, 907, 915, 1018
BstMAI	GTCTC	2 cut(s)	1040, 1165
BstMBI	GATC	4 cut(s)	381, 904, 912, 1015
BstMWI	GCNNNNNNNGC	4 cut(s)	785, 899, 926, 1031
BstNI	CCWGG	2 cut(s)	790, 1013
BstNSI	RCATGY	3 cut(s)	680, 788, 812
BstSCI	CCNGG	2 cut(s)	788, 1011
BstSFI	CTRYAG	2 cut(s)	1038, 1077
BstV1I	GCAGC	7 cut(s)	16, 741, 916, 1021, 1024, 1051, 1054
Bsu15I	ATCGAT	1 cut(s)	1146
BsuRI	GGCC	3 cut(s)	241, 493, 1011
BsuTUI	ATCGAT	1 cut(s)	1146
BtgI	CCRYGG	1 cut(s)	348
BtgZI	GCGATG	2 cut(s)	102, 135
BtsCI	GGATG	5 cut(s)	598, 944, 950, 962, 968
BtsI	GCAGTG	3 cut(s)	938, 993, 1047
BtsIMutI	CAGTG	5 cut(s)	863, 938, 993, 1047, 1094
BveI	ACCTGC	1 cut(s)	911
Cac8I	GCNNGC	4 cut(s)	495, 499, 1023, 1111
CaiI	CAGNNNCTG	1 cut(s)	995
CciI	TCATGA	1 cut(s)	547
CfoI	GCGC	1 cut(s)	70
Cfr10I	RCCGGY	1 cut(s)	1021
Cfr13I	GGNCC	3 cut(s)	239, 491, 979
ClaI	ATCGAT	1 cut(s)	1146
CseI	GACGC	1 cut(s)	18
Csp6I	GTAC	2 cut(s)	974, 1089
CviAII	CATG	6 cut(s)	349, 529, 548, 677, 785, 809
CviQI	GTAC	2 cut(s)	974, 1089
DpnI	GATC	4 cut(s)	383, 906, 914, 1017
DpnII	GATC	4 cut(s)	381, 904, 912, 1015
DraI	TTTAAA	2 cut(s)	49, 832
EaeI	YGGCCR	1 cut(s)	1009
Eam1104I	CTCTTC	3 cut(s)	113, 401, 1163
EarI	CTCTTC	3 cut(s)	113, 401, 1163
EciI	GGCGGA	1 cut(s)	204
Eco130I	CCWWGG	1 cut(s)	348
Eco47I	GGWCC	1 cut(s)	979
Eco47III	AGCGCT	1 cut(s)	69
Eco57I	CTGAAG	2 cut(s)	450, 1118
EcoNI	CCTNNNNNAGG	1 cut(s)	429
EcoRI	GAATTC	1 cut(s)	193
EcoRII	CCWGG	2 cut(s)	788, 1011
EcoT14I	CCWWGG	1 cut(s)	348
ErhI	CCWWGG	1 cut(s)	348
FaeI	CATG	6 cut(s)	352, 532, 551, 680, 788, 812
FaqI	GGGAC	1 cut(s)	965
FatI	CATG	6 cut(s)	348, 528, 547, 676, 784, 808
FbaI	TGATCA	2 cut(s)	381, 904
FblI	GTMKAC	1 cut(s)	854
Fnu4HI	GCNGC	7 cut(s)	5, 755, 930, 1035, 1038, 1065, 1068
FokI	GGATG	5 cut(s)	585, 931, 937, 949, 955
Fsp4HI	GCNGC	7 cut(s)	5, 755, 930, 1035, 1038, 1065, 1068
FspBI	CTAG	1 cut(s)	588
GlaI	GCGC	1 cut(s)	69
GluI	GCNGC	7 cut(s)	5, 755, 930, 1035, 1038, 1065, 1068
GsaI	CCCAGC	1 cut(s)	240
HaeII	RGCGCY	1 cut(s)	71
HaeIII	GGCC	3 cut(s)	241, 493, 1011
HapII	CCGG	3 cut(s)	218, 801, 1022
HgaI	GACGC	1 cut(s)	18
HhaI	GCGC	1 cut(s)	70
Hin1I	GRCGYC	1 cut(s)	10
Hin1II	CATG	6 cut(s)	352, 532, 551, 680, 788, 812
Hin6I	GCGC	1 cut(s)	68
HinP1I	GCGC	1 cut(s)	68
HincII	GTYRAC	1 cut(s)	874
HindII	GTYRAC	1 cut(s)	874
HinfI	GANTC	7 cut(s)	221, 409, 419, 655, 722, 851, 1005
HpaII	CCGG	3 cut(s)	218, 801, 1022
HphI	GGTGA	2 cut(s)	275, 632
Hpy166II	GTNNAC	3 cut(s)	634, 855, 874
Hpy188I	TCNGA	4 cut(s)	136, 585, 850, 1167
Hpy188III	TCNNGA	4 cut(s)	413, 428, 548, 719
Hpy8I	GTNNAC	3 cut(s)	634, 855, 874
Hpy99I	CGWCG	1 cut(s)	12
HpyAV	CCTTC	5 cut(s)	136, 320, 425, 482, 1096
HpyCH4III	ACNGT	2 cut(s)	991, 1078
HpyCH4IV	ACGT	2 cut(s)	378, 638
HpyF10VI	GCNNNNNNNGC	4 cut(s)	785, 899, 926, 1031
HpySE526I	ACGT	2 cut(s)	378, 638
Hsp92I	GRCGYC	1 cut(s)	10
Hsp92II	CATG	6 cut(s)	352, 532, 551, 680, 788, 812
HspAI	GCGC	1 cut(s)	68
KroI	GCCGGC	1 cut(s)	1021
KroNI	GCCGGC	1 cut(s)	1023
Ksp22I	TGATCA	2 cut(s)	381, 904
Kzo9I	GATC	4 cut(s)	381, 904, 912, 1015
LmnI	GCTCC	2 cut(s)	75, 839
Lsp1109I	GCAGC	7 cut(s)	16, 741, 916, 1021, 1024, 1051, 1054
LweI	GCATC	4 cut(s)	125, 741, 1079, 1138
MaeI	CTAG	1 cut(s)	588
MaeII	ACGT	2 cut(s)	378, 638
MaeIII	GTNAC	2 cut(s)	575, 991
MalI	GATC	4 cut(s)	383, 906, 914, 1017
MboI	GATC	4 cut(s)	381, 904, 912, 1015
MboII	GAAGA	7 cut(s)	100, 103, 203, 418, 760, 1111, 1150
MluCI	AATT	7 cut(s)	57, 193, 244, 299, 317, 401, 763
MlyI	GAGTC	3 cut(s)	418, 860, 999
MnlI	CCTC	9 cut(s)	23, 84, 100, 153, 181, 435, 763, 898, 995
MroNI	GCCGGC	1 cut(s)	1021
MroXI	GAANNNNTTC	1 cut(s)	714
MseI	TTAA	6 cut(s)	48, 438, 641, 731, 831, 897
MspA1I	CMGCKG	2 cut(s)	236, 497
MspI	CCGG	3 cut(s)	218, 801, 1022
MspR9I	CCNGG	2 cut(s)	790, 1013
MvaI	CCWGG	2 cut(s)	790, 1013
MwoI	GCNNNNNNNGC	4 cut(s)	785, 899, 926, 1031
NaeI	GCCGGC	1 cut(s)	1023
NcoI	CCATGG	1 cut(s)	348
NdeII	GATC	4 cut(s)	381, 904, 912, 1015
NgoMIV	GCCGGC	1 cut(s)	1021
NlaIII	CATG	6 cut(s)	352, 532, 551, 680, 788, 812
NlaIV	GGNNCC	1 cut(s)	981
NmeAIII	GCCGAG	2 cut(s)	869, 987
NmuCI	GTSAC	1 cut(s)	991
NspI	RCATGY	3 cut(s)	680, 788, 812
PagI	TCATGA	1 cut(s)	547
PaqCI	CACCTGC	1 cut(s)	911
PciI	ACATGT	1 cut(s)	676
PdiI	GCCGGC	1 cut(s)	1023
PdmI	GAANNNNTTC	1 cut(s)	714
PfeI	GAWTC	4 cut(s)	221, 419, 655, 722
PflMI	CCANNNNNTGG	1 cut(s)	665
PkrI	GCNGC	7 cut(s)	6, 756, 931, 1036, 1039, 1066, 1069
PleI	GAGTC	3 cut(s)	417, 859, 999
PpsI	GAGTC	3 cut(s)	417, 859, 999
PscI	ACATGT	1 cut(s)	676
Psp6I	CCWGG	2 cut(s)	788, 1011
PspFI	CCCAGC	1 cut(s)	236
PspGI	CCWGG	2 cut(s)	788, 1011
PspN4I	GGNNCC	1 cut(s)	981
PspPI	GGNCC	3 cut(s)	239, 491, 979
PstI	CTGCAG	1 cut(s)	1042
PstNI	CAGNNNCTG	1 cut(s)	995
PvuII	CAGCTG	2 cut(s)	236, 497
RsaI	GTAC	2 cut(s)	975, 1090
RsaNI	GTAC	2 cut(s)	974, 1089
SaqAI	TTAA	6 cut(s)	48, 438, 641, 731, 831, 897
SatI	GCNGC	7 cut(s)	5, 755, 930, 1035, 1038, 1065, 1068
Sau3AI	GATC	4 cut(s)	381, 904, 912, 1015
Sau96I	GGNCC	3 cut(s)	239, 491, 979
SchI	GAGTC	3 cut(s)	418, 860, 999
ScrFI	CCNGG	2 cut(s)	790, 1013
SfaNI	GCATC	4 cut(s)	125, 741, 1079, 1138
SfcI	CTRYAG	2 cut(s)	1038, 1077
SinI	GGWCC	1 cut(s)	979
SmlI	CTYRAG	2 cut(s)	163, 758
SmoI	CTYRAG	2 cut(s)	163, 758
Sse9I	AATT	7 cut(s)	57, 193, 244, 299, 317, 401, 763
SsiI	CCGC	1 cut(s)	215
SspMI	CTAG	1 cut(s)	588
StyD4I	CCNGG	2 cut(s)	788, 1011
StyI	CCWWGG	1 cut(s)	348
TaaI	ACNGT	2 cut(s)	991, 1078
TaiI	ACGT	2 cut(s)	381, 641
TaqI	TCGA	1 cut(s)	1146
TasI	AATT	7 cut(s)	57, 193, 244, 299, 317, 401, 763
TfiI	GAWTC	4 cut(s)	221, 419, 655, 722
Tru1I	TTAA	6 cut(s)	48, 438, 641, 731, 831, 897
Tru9I	TTAA	6 cut(s)	48, 438, 641, 731, 831, 897
TscAI	CASTG	5 cut(s)	870, 945, 1000, 1047, 1101
TseFI	GTSAC	1 cut(s)	991
TseI	GCWGC	7 cut(s)	4, 754, 929, 1034, 1037, 1064, 1067
Tsp45I	GTSAC	1 cut(s)	991
TspDTI	ATGAA	2 cut(s)	545, 750
TspGWI	ACGGA	1 cut(s)	961
TspRI	CASTG	5 cut(s)	870, 945, 1000, 1047, 1101
Van91I	CCANNNNNTGG	1 cut(s)	665
VpaK11BI	GGWCC	1 cut(s)	979
XagI	CCTNNNNNAGG	1 cut(s)	429
XapI	RAATTY	2 cut(s)	193, 317
XceI	RCATGY	3 cut(s)	680, 788, 812
XmiI	GTMKAC	1 cut(s)	854
XmnI	GAANNNNTTC	1 cut(s)	714
XspI	CTAG	1 cut(s)	588

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.