Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000003

Orthogroup ID

OG0006095

Physical Location & Seq

Genomic Coordinates Forward (+)

26646690 .. 26661207

Gene Structure 14518 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug03G0270300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 3141 bp

ATGGAAAGCTACTTGCACAAGGACTTCGACGTCCAGGCCAAGCACCTCTCGCCGGAGGCCTCAAACAATTGGAGGAGAGCCGTCGGCCGCGTCGTCAAGAACCCCGCCAGGAGGTTCCGACATGTCGCCCATCTTGCCAAGCGCGCCGAGGGTGAGAGGAAGAAGAAGCAAATCCAGGAAAATATTCGAGTTGCTAAGGAAAAAATTCGAGTTGCTCTTTATGTTCAAAAAGCAGCACTAACATTCATTGAGGCTGGAGCTAGTCAACCAGTTACTGATCAGGTTGAATACAAACTGTCTGAAGAGGCCGAAAAAGAGGGTTTCAGCATTCACCCAGATGAACTTGCATCAATCATACGCAGCCATGATATTAAGGTCTTGAAAAGCCACGGTGGAGTTGATGGGATTTTAACAAAAGTATCCGTCATACCAGATGAAGGTGTCAGGGGTAGCAGTATACCAACTAGGCAAAATTTTTATGGCTTAAACCGCTATACAGAGAAACCTCCCCGATCATTCTTGGTGTTTGTATGGGAAGCTCTACAGGATTTAACTTTAATTATTCTTATGGTTTGTGCCGTGGTTTCAATTGGAGTGGGACTTGCTACTGAAGGGTGGCCAGAAGGCATGTATGATGGGGTGGGAATTTTACTCAGTGTAATTTTAGTTGTTTTGGTCACTGCCATTAGTGATTACAGACAATCCATGCAATTCAAGGATTTGGACAGGGAGAAGAAAAAGATTTTTATTCAGGTCACTAGGGATGGGAAAAGACAAAAAGTTTCCATTTATGATTTGCTGGTGGGAGATATTGTTCATTTGTCAGTGGGTGACCTAGTTCCAGCAGATGGACTTTTCATATCAGGTTACAGCTTGTTGATTGATGAGTCAAGCTTGTCAGGTGAGAGTGAGCCAGTGAATGTATATGAAAAAAACCCTTTTCTTCTTTCGGGAACCAAAGTGCAAGATGGGTCAGGTAAAATGCTGGTAACAACAGTTGGTATGAGGACCGAATGGGGAAAGTTGATGGAAACTCTGAGTGAGGGAGGTGAAGATGAGACCCCACTGCAGGTGAAGCTGAATGGTGTTGCTACAATTATTGGTAAAATTGGTTTGGCTTTTGCTGTGGTGACATTTTTGGTCTTGACAGTAAGATTTTTGGTGGAAAAAGCACTTAGCAATGAGATCACAGATTGGTCTTCAACTGATGCAATGACACTTTTGAACTACTTTGCCATTGCAGTAACTATAATTGTTGTTGCAGTTCCTGAAGGATTACCATTGGCAGTAACACTGAGTCTTGCTTTTGCAATGAAGAAATTAATGAATGATAAGGCACTTGTGAGGCATCTCTCAGCCTGCGAGACAATGGGTTCTGCTGGTTGCATTTGCACAGATAAAACAGGAACATTAACCACAAACCATATGGTAGTTACCAAGATATGGATAGGTGAAAAATCTATAGATGTAAAAGGTAATGAAAGTAAAGACGTAGTAAAATCAGAAATTTCTGGAGCACTGGACATCCTTTTGCAGGTTATATTTCAAAATACAAGCTCTGAGGTTATCAAGGATGAGGGAAAGACCTCCATTTTGGGAACACCAACAGAGTCAGCATTATTAGAATTTGGTTTGCTTTTGGGTGGCGATTTTGATGCCCAGCGCAGAGAGTTTAAGATTCTTAAGATGGAACCTTTCAGTTCTGTTAGGAAGAAGATGTCTGTGCTCATCGCTCATCCTCATGGTGGGATAAGAGCTTTTTGCAAAGGTGCATCTGAAATAGTATTGGGAATGTGCAACAAAGTTATTGACTGTAATGGAGAATCTGTTAATCTCTCCCGAGAAGAGGCAAATAATATCACAAATGTCATAAATTCTTTTGCTTCTGAAGCATTAAGAACTCTCTGTTTGGCTTTCAAAGATATAGATGACTCTTCCATTAACAATGACATCCCTAATGATGGCTATACATTGATAGCAGTTGTAGGAATCAAGGACCCTGTGCGTCCTGGGGTGAAGGAAGCAGTCCAAACTTGTTTGGCTGCTGGGATAACCGTACGAATGGTCACCGGTGACAATATATATACTGCTAAAGCCATAGCTAGAGAATGTGGCATACTCACAGAGAGTGGTTTGGCAATAGAAGGACCAGAATTTCGTAACATGTCTCCTGCAGAGATGAAAGCTGTTATACCGAGGATTCAGGTGATGGCCCGATCCTTACCATTGGATAAGCACACCTTGGTGAAGAATTTGAGGGATACATTCCGGGAGGTAGTTGCAGTTACAGGTGATGGAACCAATGACGCTCCTGCTTTGCATGAGGCAGACATTGGACTTGCTATGGGCATAGCAGGCACAGAGGTTGCTAAAGAAAGTGCTGATGTCATCATATTGGATGACAATTTCAGTACTATAGTAAATGTGGCCAGATGGGGACGTTCAGTGTACATAAACATTCAAAAGTTTGTCCAGTTCCAGTTAACGGTTAACGTTGTTGCTCTGATGATCAATTTTGTTTCTGCATGTGTATCAGGAGATGCTCCCCTTACTGCTGTGCAATTACTCTGGGTCAACATGATTATGGACACTCTTGGTGCTTTGGCACTGGCTACAGAGCCTCCAAATGAAGGACTGATGAAAAGGCCCCCTGTTTCAAGGGGGACAAGCTTCATCACCAGGCCCATGTGGAGGAATATTATTGGTCAGAGCATTTATCAACTGGCTGTTCTTGGAGTTCTCGATTTCCGCGGAACGCAGCTGCTAGGACTTACTGGTTCAGATGCAACTGATATTCTTGACACTGTGATATTCAATGCATTTGTGTTCTGCCAGGTGTTTAATGAGATAAACAGCCGTGATATAGAGAAGATAAACATATTCCGTGGCATGTTTGACAGCTGGGTATTCCTTGGGGTCATGGTTTGCACAGTGGGCTTCCAATTTGTCCTAGTAGAGTTCTTGGGCGCGTTTGCTAGCACTGTACCACTGAGCTGGCAACTATGGTTACTCTGCATTATACTTGGATCGATTAGCATGCCTGTTGCAGTTGTCCTGAAATGCATACCCGTTGAAAGCAAAGTTAAACCCCCTGATGGCTATGAAGCTATTCCTGGTGGTCCTCCAGCCGGCCTCGTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000209 GO:0003674 GO:0003824 GO:0004842 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0006464 GO:0006508 GO:0006511 GO:0006807 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009987 GO:0016567 GO:0016740 GO:0019538 GO:0019787 GO:0019899 GO:0019941 GO:0030163 GO:0031625 GO:0032446 GO:0036211 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0043632 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0044389 GO:0044424 GO:0044464 GO:0051603 GO:0061630 GO:0061659 GO:0070647 GO:0071704 GO:0140096 GO:1901564 GO:1901565 GO:1901575

KEGG Pathways

Metabolic & Signaling

ko04120 map04120

Pfam Domains

Protein Families

UQ_con

Protein Analysis

1046

Amino Acids

114.03

Weight (kDa)

5.74

Isoelectric Point (pI)

34.19

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
CaATP_NAI	PF12515	5 - 50	6.7e-14	Ca2+-ATPase N terminal autoinhibitory domain
Cation_ATPase_N	PF00690	129 - 196	1.4e-11	Cation transporter/ATPase, N-terminus
E1-E2_ATPase	PF00122	251 - 345	6.6e-21	P-type ATPase actuator domain
Cation_ATPase	PF13246	520 - 670	3.3e-32	P-type ATPase, cytoplasmic domain N
Hydrolase	PF00702	656 - 777	9.8e-12	haloacid dehalogenase-like hydrolase
Cation_ATPase_C	PF00689	848 - 1021	2e-42	Cation transporting ATPase, C-terminus

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Orthologous Genes (Group: OG0006095)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G05080 AT5G05080 AT5G05080 AT5G05080
fragaria_vesca	FvH4_1g29560 FvH4_1g29560 FvH4_1g29560
malus_domestica	MD12G1099900.v1.1 MD14G1093100.v1.1
prunus_persica	Prupe.7G024400_v2.0.a1 Prupe.7G024400_v2.0.a1 Prupe.7G024400_v2.0.a1
pyrus_communis	pycom12g09370 pycom14g09040
rosa_chinensis	RchiOBHm_Chr3g0495201
rosa_laevigata	RLG00000022639
rosa_multiflora	Rmu_sc0002943.1_g000025
rosa_roxburghii	Rroxscaffold_6G00390700
rosa_rugosa	Rorug03G0270100 Rorug03G0270200 Rorug03G0270200 Rorug03G0270300 Rorug03G0270300
rosa_samantha	Rh3AG319600 Rh3CG351600 Rh3DG353700
rosa_wichuraiana	Rw3G027910

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	1060
AasI	GACNNNNNNGTC	1 cut(s)	29
AatII	GACGTC	1 cut(s)	33
Acc36I	ACCTGC	2 cut(s)	1060, 1525
AccB7I	CCANNNNNTGG	2 cut(s)	848, 1443
AccI	GTMKAC	1 cut(s)	457
AccII	CGCG	4 cut(s)	90, 144, 2751, 2969
AciI	CCGC	5 cut(s)	88, 105, 490, 2749, 2751
AclI	AACGTT	1 cut(s)	2493
AclWI	GGATC	2 cut(s)	2211, 3034
AcoI	YGGCCR	3 cut(s)	85, 617, 2427
AcsI	RAATTY	8 cut(s)	204, 472, 645, 1506, 1625, 1873, 2153, 2251
AcuI	CTGAAG	4 cut(s)	321, 630, 1290, 1908
AcyI	GRCGYC	1 cut(s)	30
AfaI	GTAC	4 cut(s)	2058, 2413, 2450, 2985
AflII	CTTAAG	1 cut(s)	1682
AflIII	ACRYGT	2 cut(s)	121, 2163
AgeI	ACCGGT	1 cut(s)	2069
AjnI	CCWGG	7 cut(s)	33, 107, 174, 2008, 2678, 2832, 3112
AleI	CACNNNNGTG	1 cut(s)	2243
AloI	GAACNNNNNNTCC	2 cut(s)	798, 830
Alw21I	GWGCWC	2 cut(s)	1519, 1728
Alw26I	GTCTC	3 cut(s)	1052, 1358, 2172
AlwI	GGATC	2 cut(s)	2211, 3034
AlwNI	CAGNNNCTG	2 cut(s)	275, 1268
Ama87I	CYCGRG	1 cut(s)	1839
ApeKI	GCWGC	5 cut(s)	233, 360, 2042, 2758, 2761
ApoI	RAATTY	8 cut(s)	204, 472, 645, 1506, 1625, 1873, 2153, 2251
ArsI	GACNNNNNNTTYG	4 cut(s)	1576, 1608, 2139, 2171
AseI	ATTAAT	1 cut(s)	1322
AsiGI	ACCGGT	1 cut(s)	2069
Asp700I	GAANNNNTTC	3 cut(s)	183, 204, 3108
AspLEI	GCGC	4 cut(s)	144, 146, 1665, 2969
AspS9I	GGNCC	7 cut(s)	1008, 1996, 2147, 2212, 2646, 2682, 3119
AsuC2I	CCSGG	1 cut(s)	2270
AsuNHI	GCTAGC	1 cut(s)	2975
AvaI	CYCGRG	1 cut(s)	1839
AvaII	GGWCC	4 cut(s)	1008, 1996, 2147, 3119
BaeI	ACNNNNGTAYC	2 cut(s)	402, 435
BalI	TGGCCA	2 cut(s)	619, 2429
BbsI	GAAGAC	1 cut(s)	1191
Bbv12I	GWGCWC	2 cut(s)	1519, 1728
BbvI	GCAGC	5 cut(s)	245, 372, 2029, 2748, 2770
BceAI	ACGGC	3 cut(s)	65, 563, 2841
BcgI	CGANNNNNNTGC	4 cut(s)	1637, 1671, 3019, 3053
BciT130I	CCWGG	7 cut(s)	35, 109, 176, 2010, 2680, 2834, 3114
BciVI	GTATCC	2 cut(s)	430, 2254
BclI	TGATCA	2 cut(s)	277, 2508
BcnI	CCSGG	1 cut(s)	2270
BcoDI	GTCTC	3 cut(s)	1052, 1358, 2172
BfaI	CTAG	8 cut(s)	261, 465, 759, 836, 2103, 2765, 2951, 2976
BfmI	CTRYAG	6 cut(s)	542, 1067, 1461, 2172, 2415, 2613
BfrI	CTTAAG	1 cut(s)	1682
BfuAI	ACCTGC	2 cut(s)	1060, 1525
BfuI	GTATCC	2 cut(s)	430, 2254
BisI	GCNGC	6 cut(s)	88, 234, 361, 2043, 2759, 2762
BlsI	GCNGC	6 cut(s)	89, 235, 362, 2044, 2760, 2763
BmcAI	AGTACT	1 cut(s)	2413
Bme1390I	CCNGG	8 cut(s)	35, 109, 176, 2010, 2270, 2680, 2834, 3114
Bme18I	GGWCC	4 cut(s)	1008, 1996, 2147, 3119
BmeT110I	CYCGRG	1 cut(s)	1839
BmgT120I	GGNCC	7 cut(s)	1008, 1996, 2147, 2212, 2646, 2682, 3119
BmiI	GGNNCC	6 cut(s)	116, 955, 1692, 1998, 2299, 2648
BmrFI	CCNGG	8 cut(s)	35, 109, 176, 2010, 2270, 2680, 2834, 3114
BmsI	GCATC	7 cut(s)	356, 1198, 1357, 1645, 1781, 2530, 2773
BmtI	GCTAGC	1 cut(s)	2979
BpiI	GAAGAC	1 cut(s)	1191
BpmI	CTGGAG	3 cut(s)	276, 1533, 3108
Bpu10I	CCTNAGC	1 cut(s)	195
BpuMI	CCSGG	1 cut(s)	2270
Bsa29I	ATCGAT	1 cut(s)	3029
BsaHI	GRCGYC	1 cut(s)	30
BsaI	GGTCTC	1 cut(s)	1052
BsaJI	CCNNGG	9 cut(s)	147, 388, 579, 2009, 2195, 2241, 2749, 2884, 2911
BsaWI	WCCGGW	1 cut(s)	2069
BsaXI	ACNNNNNCTCC	6 cut(s)	798, 828, 1812, 1842, 2605, 2635
Bse118I	RCCGGY	2 cut(s)	2069, 3128
Bse1I	ACTGG	8 cut(s)	269, 914, 1524, 2473, 2479, 2613, 2727, 2779
Bse3DI	GCAATG	4 cut(s)	1186, 1218, 1236, 1317
BseBI	CCWGG	7 cut(s)	35, 109, 176, 2010, 2680, 2834, 3114
BseCI	ATCGAT	1 cut(s)	3029
BseDI	CCNNGG	9 cut(s)	147, 388, 579, 2009, 2195, 2241, 2749, 2884, 2911
BseGI	GGATG	6 cut(s)	769, 1524, 1579, 1735, 1950, 2404
BseMI	GCAATG	4 cut(s)	1186, 1218, 1236, 1317
BseMII	CTCAG	6 cut(s)	667, 1028, 1286, 1368, 1551, 2981
BseNI	ACTGG	8 cut(s)	269, 914, 1524, 2473, 2479, 2613, 2727, 2779
BsePI	GCGCGC	1 cut(s)	142
BseRI	GAGGAG	1 cut(s)	88
BseX3I	CGGCCG	1 cut(s)	85
BseXI	GCAGC	5 cut(s)	245, 372, 2029, 2748, 2770
BseYI	CCCAGC	3 cut(s)	1659, 2045, 2901
Bsh1236I	CGCG	4 cut(s)	90, 144, 2751, 2969
Bsh1285I	CGRYCG	1 cut(s)	88
BshTI	ACCGGT	1 cut(s)	2069
BshVI	ATCGAT	1 cut(s)	3029
BsiEI	CGRYCG	1 cut(s)	88
BsiHKAI	GWGCWC	2 cut(s)	1519, 1728
BsiHKCI	CYCGRG	1 cut(s)	1839
BsiSI	CCGG	4 cut(s)	53, 2070, 2269, 3129
BsiWI	CGTACG	1 cut(s)	2056
BslFI	GGGAC	3 cut(s)	612, 2451, 2677
BsmAI	GTCTC	3 cut(s)	1052, 1358, 2172
BsmFI	GGGAC	3 cut(s)	612, 2451, 2677
BsmI	GAATGC	1 cut(s)	327
Bso31I	GGTCTC	1 cut(s)	1052
BsoBI	CYCGRG	1 cut(s)	1839
Bsp1286I	GDGCHC	2 cut(s)	1519, 1728
Bsp1407I	TGTACA	1 cut(s)	2448
Bsp143I	GATC	6 cut(s)	277, 512, 1185, 2216, 2508, 3026
BspACI	CCGC	5 cut(s)	88, 105, 490, 2749, 2751
BspCNI	CTCAG	6 cut(s)	666, 1029, 1287, 1367, 1552, 2982
BspDI	ATCGAT	1 cut(s)	3029
BspFNI	CGCG	4 cut(s)	90, 144, 2751, 2969
BspLI	GGNNCC	6 cut(s)	116, 955, 1692, 1998, 2299, 2648
BspMAI	CTGCAG	2 cut(s)	1071, 2176
BspMI	ACCTGC	2 cut(s)	1060, 1525
BspOI	GCTAGC	1 cut(s)	2979
BspPI	GGATC	2 cut(s)	2211, 3034
BspTI	CTTAAG	1 cut(s)	1682
BspTNI	GGTCTC	1 cut(s)	1052
BsrDI	GCAATG	4 cut(s)	1186, 1218, 1236, 1317
BsrFI	RCCGGY	2 cut(s)	2069, 3128
BsrGI	TGTACA	1 cut(s)	2448
BsrI	ACTGG	8 cut(s)	269, 914, 1524, 2473, 2479, 2613, 2727, 2779
BssAI	RCCGGY	2 cut(s)	2069, 3128
BssECI	CCNNGG	9 cut(s)	147, 388, 579, 2009, 2195, 2241, 2749, 2884, 2911
BssHII	GCGCGC	1 cut(s)	142
BssMI	GATC	6 cut(s)	277, 512, 1185, 2216, 2508, 3026
BssNAI	GTATAC	1 cut(s)	458
BssNI	GRCGYC	1 cut(s)	30
BssT1I	CCWWGG	2 cut(s)	2241, 2911
Bst1107I	GTATAC	1 cut(s)	458
Bst2UI	CCWGG	7 cut(s)	35, 109, 176, 2010, 2680, 2834, 3114
Bst6I	CTCTTC	3 cut(s)	297, 1839, 1939
BstACI	GRCGYC	1 cut(s)	30
BstAFI	CTTAAG	1 cut(s)	1682
BstAUI	TGTACA	1 cut(s)	2448
BstC8I	GCNNGC	7 cut(s)	144, 1360, 2356, 2977, 2996, 3038, 3130
BstDEI	CTNAG	8 cut(s)	195, 653, 1037, 1175, 1295, 1354, 1560, 2990
BstDSI	CCRYGG	4 cut(s)	388, 579, 2749, 2884
BstEII	GGTNACC	2 cut(s)	830, 2065
BstENI	CCTNNNNNAGG	1 cut(s)	1532
BstF5I	GGATG	6 cut(s)	769, 1524, 1579, 1735, 1950, 2404
BstFNI	CGCG	4 cut(s)	90, 144, 2751, 2969
BstHHI	GCGC	4 cut(s)	144, 146, 1665, 2969
BstKTI	GATC	6 cut(s)	280, 515, 1188, 2219, 2511, 3029
BstMAI	GTCTC	3 cut(s)	1052, 1358, 2172
BstMBI	GATC	6 cut(s)	277, 512, 1185, 2216, 2508, 3026
BstMCI	CGRYCG	1 cut(s)	88
BstMWI	GCNNNNNNNGC	8 cut(s)	49, 134, 143, 489, 1075, 1889, 2355, 2934
BstNI	CCWGG	7 cut(s)	35, 109, 176, 2010, 2680, 2834, 3114
BstNSI	RCATGY	6 cut(s)	125, 631, 2167, 2529, 2893, 3040
BstPI	GGTNACC	2 cut(s)	830, 2065
BstSCI	CCNGG	8 cut(s)	33, 107, 174, 2008, 2268, 2678, 2832, 3112
BstSFI	CTRYAG	6 cut(s)	542, 1067, 1461, 2172, 2415, 2613
BstUI	CGCG	4 cut(s)	90, 144, 2751, 2969
BstV1I	GCAGC	5 cut(s)	245, 372, 2029, 2748, 2770
BstV2I	GAAGAC	1 cut(s)	1191
BstXI	CCANNNNNNTGG	1 cut(s)	2994
BstZ17I	GTATAC	1 cut(s)	458
BstZI	CGGCCG	1 cut(s)	85
Bsu15I	ATCGAT	1 cut(s)	3029
BsuI	GTATCC	2 cut(s)	430, 2254
BsuTUI	ATCGAT	1 cut(s)	3029
BtgI	CCRYGG	4 cut(s)	388, 579, 2749, 2884
BtgZI	GCGATG	1 cut(s)	1714
BtsCI	GGATG	6 cut(s)	769, 1524, 1579, 1735, 1950, 2404
BtsI	GCAGTG	2 cut(s)	678, 1064
BveI	ACCTGC	2 cut(s)	1060, 1525
Cac8I	GCNNGC	7 cut(s)	144, 1360, 2356, 2977, 2996, 3038, 3130
CaiI	CAGNNNCTG	2 cut(s)	275, 1268
CfoI	GCGC	4 cut(s)	144, 146, 1665, 2969
Cfr10I	RCCGGY	2 cut(s)	2069, 3128
Cfr13I	GGNCC	7 cut(s)	1008, 1996, 2147, 2212, 2646, 2682, 3119
Cfr42I	CCGCGG	1 cut(s)	2752
ClaI	ATCGAT	1 cut(s)	3029
CseI	GACGC	3 cut(s)	79, 1994, 2315
Csp6I	GTAC	4 cut(s)	2057, 2412, 2449, 2984
CspAI	ACCGGT	1 cut(s)	2069
CspCI	CAANNNNNGTGG	2 cut(s)	576, 611
CviQI	GTAC	4 cut(s)	2057, 2412, 2449, 2984
DdeI	CTNAG	8 cut(s)	195, 653, 1037, 1175, 1295, 1354, 1560, 2990
DpnI	GATC	6 cut(s)	279, 514, 1187, 2218, 2510, 3028
DpnII	GATC	6 cut(s)	277, 512, 1185, 2216, 2508, 3026
DrdI	GACNNNNNNGTC	1 cut(s)	29
DseDI	GACNNNNNNGTC	1 cut(s)	29
EaeI	YGGCCR	3 cut(s)	85, 617, 2427
EagI	CGGCCG	1 cut(s)	85
Eam1104I	CTCTTC	3 cut(s)	297, 1839, 1939
EarI	CTCTTC	3 cut(s)	297, 1839, 1939
EclXI	CGGCCG	1 cut(s)	85
Eco130I	CCWWGG	2 cut(s)	2241, 2911
Eco147I	AGGCCT	1 cut(s)	59
Eco31I	GGTCTC	1 cut(s)	1052
Eco47I	GGWCC	4 cut(s)	1008, 1996, 2147, 3119
Eco52I	CGGCCG	1 cut(s)	85
Eco57I	CTGAAG	4 cut(s)	321, 630, 1290, 1908
Eco88I	CYCGRG	1 cut(s)	1839
Eco91I	GGTNACC	2 cut(s)	830, 2065
EcoNI	CCTNNNNNAGG	1 cut(s)	1532
EcoO109I	RGGNCCY	2 cut(s)	1996, 2646
EcoO65I	GGTNACC	2 cut(s)	830, 2065
EcoRII	CCWGG	7 cut(s)	33, 107, 174, 2008, 2678, 2832, 3112
EcoT14I	CCWWGG	2 cut(s)	2241, 2911
EcoT22I	ATGCAT	2 cut(s)	2821, 3065
ErhI	CCWWGG	2 cut(s)	2241, 2911
FalI	AAGNNNNNCTT	2 cut(s)	2225, 2257
FaqI	GGGAC	3 cut(s)	612, 2451, 2677
FauI	CCCGC	1 cut(s)	112
FauNDI	CATATG	1 cut(s)	1425
FbaI	TGATCA	2 cut(s)	277, 2508
FblI	GTMKAC	1 cut(s)	457
Fnu4HI	GCNGC	6 cut(s)	88, 234, 361, 2043, 2759, 2762
FokI	GGATG	6 cut(s)	776, 1511, 1586, 1722, 1937, 2411
Fsp4HI	GCNGC	6 cut(s)	88, 234, 361, 2043, 2759, 2762
FspBI	CTAG	8 cut(s)	261, 465, 759, 836, 2103, 2765, 2951, 2976
GlaI	GCGC	4 cut(s)	143, 145, 1664, 2968
GluI	GCNGC	6 cut(s)	88, 234, 361, 2043, 2759, 2762
GsaI	CCCAGC	3 cut(s)	1663, 2049, 2905
GsuI	CTGGAG	3 cut(s)	276, 1533, 3108
HapII	CCGG	4 cut(s)	53, 2070, 2269, 3129
HgaI	GACGC	3 cut(s)	79, 1994, 2315
HhaI	GCGC	4 cut(s)	144, 146, 1665, 2969
Hin1I	GRCGYC	1 cut(s)	30
Hin6I	GCGC	4 cut(s)	142, 144, 1663, 2967
HinP1I	GCGC	4 cut(s)	142, 144, 1663, 2967
HincII	GTYRAC	4 cut(s)	266, 2484, 2491, 2575
HindII	GTYRAC	4 cut(s)	266, 2484, 2491, 2575
HindIII	AAGCTT	2 cut(s)	892, 2668
HinfI	GANTC	8 cut(s)	887, 1297, 1610, 1678, 1823, 1931, 1989, 2200
HpaI	GTTAAC	2 cut(s)	2484, 2491
HpaII	CCGG	4 cut(s)	53, 2070, 2269, 3129
Hpy166II	GTNNAC	6 cut(s)	266, 458, 2449, 2484, 2491, 2575
Hpy8I	GTNNAC	6 cut(s)	266, 458, 2449, 2484, 2491, 2575
Hpy99I	CGWCG	3 cut(s)	32, 86, 95
HpyAV	CCTTC	7 cut(s)	431, 605, 617, 1265, 2011, 2138, 2624
HpyCH4IV	ACGT	4 cut(s)	30, 1491, 2440, 2493
HpyF10VI	GCNNNNNNNGC	8 cut(s)	49, 134, 143, 489, 1075, 1889, 2355, 2934
HpyF3I	CTNAG	8 cut(s)	195, 653, 1037, 1175, 1295, 1354, 1560, 2990
HpySE526I	ACGT	4 cut(s)	30, 1491, 2440, 2493
Hsp92I	GRCGYC	1 cut(s)	30
HspAI	GCGC	4 cut(s)	142, 144, 1663, 2967
KroI	GCCGGC	1 cut(s)	3128
KroNI	GCCGGC	1 cut(s)	3130
Ksp22I	TGATCA	2 cut(s)	277, 2508
KspAI	GTTAAC	2 cut(s)	2484, 2491
KspI	CCGCGG	1 cut(s)	2752
Kzo9I	GATC	6 cut(s)	277, 512, 1185, 2216, 2508, 3026
LmnI	GCTCC	4 cut(s)	257, 1514, 2314, 2548
Lsp1109I	GCAGC	5 cut(s)	245, 372, 2029, 2748, 2770
LweI	GCATC	7 cut(s)	356, 1198, 1357, 1645, 1781, 2530, 2773
MaeI	CTAG	8 cut(s)	261, 465, 759, 836, 2103, 2765, 2951, 2976
MaeII	ACGT	4 cut(s)	30, 1491, 2440, 2493
MalI	GATC	6 cut(s)	279, 514, 1187, 2218, 2510, 3028
MboI	GATC	6 cut(s)	277, 512, 1185, 2216, 2508, 3026
MfeI	CAATTG	2 cut(s)	67, 588
MhlI	GDGCHC	2 cut(s)	1519, 1728
MlsI	TGGCCA	2 cut(s)	619, 2429
MluNI	TGGCCA	2 cut(s)	619, 2429
MlyI	GAGTC	4 cut(s)	896, 1306, 1619, 1925
MmeI	TCCRAC	1 cut(s)	142
Mox20I	TGGCCA	2 cut(s)	619, 2429
Mph1103I	ATGCAT	2 cut(s)	2821, 3065
MroNI	GCCGGC	1 cut(s)	3128
MroXI	GAANNNNTTC	3 cut(s)	183, 204, 3108
MscI	TGGCCA	2 cut(s)	619, 2429
MslI	CAYNNNNRTG	4 cut(s)	336, 1740, 2243, 2582
Msp20I	TGGCCA	2 cut(s)	619, 2429
MspA1I	CMGCKG	3 cut(s)	2751, 2761, 2901
MspCI	CTTAAG	1 cut(s)	1682
MspI	CCGG	4 cut(s)	53, 2070, 2269, 3129
MspR9I	CCNGG	8 cut(s)	35, 109, 176, 2010, 2270, 2680, 2834, 3114
MunI	CAATTG	2 cut(s)	67, 588
Mva1269I	GAATGC	1 cut(s)	327
MvaI	CCWGG	7 cut(s)	35, 109, 176, 2010, 2680, 2834, 3114
MvnI	CGCG	4 cut(s)	90, 144, 2751, 2969
MwoI	GCNNNNNNNGC	8 cut(s)	49, 134, 143, 489, 1075, 1889, 2355, 2934
NaeI	GCCGGC	1 cut(s)	3130
NciI	CCSGG	1 cut(s)	2270
NdeI	CATATG	1 cut(s)	1425
NdeII	GATC	6 cut(s)	277, 512, 1185, 2216, 2508, 3026
NgoMIV	GCCGGC	1 cut(s)	3128
NheI	GCTAGC	1 cut(s)	2975
NlaIV	GGNNCC	6 cut(s)	116, 955, 1692, 1998, 2299, 2648
NmeAIII	GCCGAG	1 cut(s)	172
NmuCI	GTSAC	6 cut(s)	676, 754, 830, 1129, 2065, 2072
NsiI	ATGCAT	2 cut(s)	2821, 3065
NspI	RCATGY	6 cut(s)	125, 631, 2167, 2529, 2893, 3040
OliI	CACNNNNGTG	1 cut(s)	2243
PaeI	GCATGC	1 cut(s)	3040
PaqCI	CACCTGC	1 cut(s)	1060
PauI	GCGCGC	1 cut(s)	142
PceI	AGGCCT	1 cut(s)	59
PciI	ACATGT	2 cut(s)	121, 2163
PcsI	WCGNNNNNNNCGW	1 cut(s)	90
PctI	GAATGC	1 cut(s)	327
PdiI	GCCGGC	1 cut(s)	3130
PdmI	GAANNNNTTC	3 cut(s)	183, 204, 3108
PfeI	GAWTC	4 cut(s)	1678, 1823, 1989, 2200
Pfl23II	CGTACG	1 cut(s)	2056
PflMI	CCANNNNNTGG	2 cut(s)	848, 1443
PfoI	TCCNGGA	2 cut(s)	174, 2268
PinAI	ACCGGT	1 cut(s)	2069
PkrI	GCNGC	6 cut(s)	89, 235, 362, 2044, 2760, 2763
PleI	GAGTC	4 cut(s)	895, 1305, 1618, 1925
PpsI	GAGTC	4 cut(s)	895, 1305, 1618, 1925
PpuMI	RGGWCCY	1 cut(s)	1996
PscI	ACATGT	2 cut(s)	121, 2163
PshBI	ATTAAT	1 cut(s)	1322
Psp1406I	AACGTT	1 cut(s)	2493
Psp5II	RGGWCCY	1 cut(s)	1996
Psp6I	CCWGG	7 cut(s)	33, 107, 174, 2008, 2678, 2832, 3112
PspEI	GGTNACC	2 cut(s)	830, 2065
PspFI	CCCAGC	3 cut(s)	1659, 2045, 2901
PspGI	CCWGG	7 cut(s)	33, 107, 174, 2008, 2678, 2832, 3112
PspLI	CGTACG	1 cut(s)	2056
PspN4I	GGNNCC	6 cut(s)	116, 955, 1692, 1998, 2299, 2648
PspPI	GGNCC	7 cut(s)	1008, 1996, 2147, 2212, 2646, 2682, 3119
PspPPI	RGGWCCY	1 cut(s)	1996
PstI	CTGCAG	2 cut(s)	1071, 2176
PstNI	CAGNNNCTG	2 cut(s)	275, 1268
PteI	GCGCGC	1 cut(s)	142
PvuII	CAGCTG	2 cut(s)	2761, 2901
RsaI	GTAC	4 cut(s)	2058, 2413, 2450, 2985
RsaNI	GTAC	4 cut(s)	2057, 2412, 2449, 2984
RseI	CAYNNNNRTG	4 cut(s)	336, 1740, 2243, 2582
SacII	CCGCGG	1 cut(s)	2752
SatI	GCNGC	6 cut(s)	88, 234, 361, 2043, 2759, 2762
Sau3AI	GATC	6 cut(s)	277, 512, 1185, 2216, 2508, 3026
Sau96I	GGNCC	7 cut(s)	1008, 1996, 2147, 2212, 2646, 2682, 3119
ScaI	AGTACT	1 cut(s)	2413
SchI	GAGTC	4 cut(s)	896, 1306, 1619, 1925
ScrFI	CCNGG	8 cut(s)	35, 109, 176, 2010, 2270, 2680, 2834, 3114
SduI	GDGCHC	2 cut(s)	1519, 1728
SfaNI	GCATC	7 cut(s)	356, 1198, 1357, 1645, 1781, 2530, 2773
SfcI	CTRYAG	6 cut(s)	542, 1067, 1461, 2172, 2415, 2613
Sfr303I	CCGCGG	1 cut(s)	2752
SgrAI	CRCCGGYG	1 cut(s)	2069
SgrBI	CCGCGG	1 cut(s)	2752
SinI	GGWCC	4 cut(s)	1008, 1996, 2147, 3119
SmiMI	CAYNNNNRTG	4 cut(s)	336, 1740, 2243, 2582
SmlI	CTYRAG	1 cut(s)	1682
SmoI	CTYRAG	1 cut(s)	1682
SphI	GCATGC	1 cut(s)	3040
SseBI	AGGCCT	1 cut(s)	59
SsiI	CCGC	5 cut(s)	88, 105, 490, 2749, 2751
SspI	AATATT	2 cut(s)	184, 2698
SspMI	CTAG	8 cut(s)	261, 465, 759, 836, 2103, 2765, 2951, 2976
StuI	AGGCCT	1 cut(s)	59
StyD4I	CCNGG	8 cut(s)	33, 107, 174, 2008, 2268, 2678, 2832, 3112
StyI	CCWWGG	2 cut(s)	2241, 2911
TaiI	ACGT	4 cut(s)	33, 1494, 2443, 2496
TaqI	TCGA	5 cut(s)	27, 187, 208, 2742, 3029
TaqII	GACCGA	1 cut(s)	1025
TatI	WGTACW	2 cut(s)	2411, 2448
TauI	GCSGC	1 cut(s)	90
TfiI	GAWTC	4 cut(s)	1678, 1823, 1989, 2200
TseFI	GTSAC	6 cut(s)	676, 754, 830, 1129, 2065, 2072
TseI	GCWGC	5 cut(s)	233, 360, 2042, 2758, 2761
Tsp45I	GTSAC	6 cut(s)	676, 754, 830, 1129, 2065, 2072
TspGWI	ACGGA	2 cut(s)	412, 2873
Van91I	CCANNNNNTGG	2 cut(s)	848, 1443
Vha464I	CTTAAG	1 cut(s)	1682
VpaK11BI	GGWCC	4 cut(s)	1008, 1996, 2147, 3119
VspI	ATTAAT	1 cut(s)	1322
XagI	CCTNNNNNAGG	1 cut(s)	1532
XapI	RAATTY	8 cut(s)	204, 472, 645, 1506, 1625, 1873, 2153, 2251
XceI	RCATGY	6 cut(s)	125, 631, 2167, 2529, 2893, 3040
XcmI	CCANNNNNNNNNTGG	1 cut(s)	1423
XmiI	GTMKAC	1 cut(s)	457
XmnI	GAANNNNTTC	3 cut(s)	183, 204, 3108
XspI	CTAG	8 cut(s)	261, 465, 759, 836, 2103, 2765, 2951, 2976
ZraI	GACGTC	1 cut(s)	31
ZrmI	AGTACT	1 cut(s)	2413
Zsp2I	ATGCAT	2 cut(s)	2821, 3065

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.