Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr14

Orthogroup ID

OG0006095

Physical Location & Seq

Genomic Coordinates Forward (+)

13884802 .. 13888600

Gene Structure 3799 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD14G1093100.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 819 bp

ATGGCTACGAATGAAAATCTCCCACCAAATGTAATTAAGCAACTTGCGAAGGAATTGAAGAGTCTTGATGAATCCCCTCCTGAAGGCATAAAAGTTGGTGTTAACGATGATGATTTTTCTATCATATATGCTGATATTGAAGGGCCAGCTGGTACTCCTTACGAGAATGGTGTTTTCCGCATGAAGTTGTTATTGTCTTGGGACTTTCCACACTCTCCTCCTAAAGGCTACTTCCTGACTAAGATTTTCCATCCAAACATTGCGACTAACGGTGAGATTTGTGTCAACACCTTGAAAAAAGATTGGAATCCAAGTCTTGGATTACGACATGTTCTGATTGTAGTCAGATGTCTATTGATTGAACCATTTCCTGAATCAGCGTTGAATGAACAGGCAGGCAAGATGCTTCTTGAAAATTATGAGGAGTATGCAAGACATGCAAGGCTTTATACTGGAATCCATGCAAAGCCGAAACCCAAGTTTAAAACGGGAGCTATTTCAGAGTCGACAACTGCACTGAATGTGGAACAAACTAACACTTCGACACTGAATGCTGATCAAAAGAACACAGCACCTGGTGCTGCCTTGCCAGTGATTTCTGCATCCCCATCCCCACTGGCGCCTATTACAGTCACCACTAGAGGAAACGGGCAGGATCAGCCAGCTGTTGTAGCTCCAATGGAGACTGGAGTAAGTGGGTCTGCTGCGGCTGCATCAGCAGCAGCAACTACTACCGTGAGGAAAGATGGCGGATTGACAAAAGCACAGGCGGACAAGAAGAAAATAGATGCGAGAAAGAAGAGTTTAAAGAGATTATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000209 GO:0003674 GO:0003824 GO:0004842 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0006464 GO:0006508 GO:0006511 GO:0006807 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009987 GO:0016567 GO:0016740 GO:0019538 GO:0019787 GO:0019899 GO:0019941 GO:0030163 GO:0031625 GO:0032446 GO:0036211 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0043632 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0044389 GO:0044424 GO:0044464 GO:0051603 GO:0061630 GO:0061659 GO:0070647 GO:0071704 GO:0140096 GO:1901564 GO:1901565 GO:1901575

KEGG Pathways

Metabolic & Signaling

ko04120 map04120

Pfam Domains

Protein Families

UQ_con

Protein Analysis

273

Amino Acids

29.25

Weight (kDa)

8.9

Isoelectric Point (pI)

34.94

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
UQ_con	PF00179	15 - 150	1.2e-38	Ubiquitin-conjugating enzyme

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0006095)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G05080 AT5G05080 AT5G05080 AT5G05080
fragaria_vesca	FvH4_1g29560 FvH4_1g29560 FvH4_1g29560
malus_domestica	MD12G1099900.v1.1 MD14G1093100.v1.1
prunus_persica	Prupe.7G024400_v2.0.a1 Prupe.7G024400_v2.0.a1 Prupe.7G024400_v2.0.a1
pyrus_communis	pycom12g09370 pycom14g09040
rosa_chinensis	RchiOBHm_Chr3g0495201
rosa_laevigata	RLG00000022639
rosa_multiflora	Rmu_sc0002943.1_g000025
rosa_roxburghii	Rroxscaffold_6G00390700
rosa_rugosa	Rorug03G0270100 Rorug03G0270200 Rorug03G0270200 Rorug03G0270300 Rorug03G0270300
rosa_samantha	Rh3AG319600 Rh3CG351600 Rh3DG353700
rosa_wichuraiana	Rw3G027910

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	619
AccB7I	CCANNNNNTGG	1 cut(s)	317
AccI	GTMKAC	1 cut(s)	506
AciI	CCGC	4 cut(s)	178, 707, 750, 770
AclWI	GGATC	1 cut(s)	663
AcuI	CTGAAG	1 cut(s)	102
AcyI	GRCGYC	1 cut(s)	620
AdeI	CACNNNGTG	1 cut(s)	578
AfaI	GTAC	1 cut(s)	154
AfiI	CCNNNNNNNGG	3 cut(s)	83, 224, 317
AflIII	ACRYGT	1 cut(s)	328
AgsI	TTSAA	6 cut(s)	58, 140, 295, 362, 385, 413
AjnI	CCWGG	1 cut(s)	574
AluBI	AGCT	4 cut(s)	149, 494, 665, 674
AluI	AGCT	4 cut(s)	149, 494, 665, 674
Alw26I	GTCTC	1 cut(s)	677
AlwI	GGATC	1 cut(s)	663
AlwNI	CAGNNNCTG	1 cut(s)	575
AoxI	GGCC	1 cut(s)	143
ApeKI	GCWGC	5 cut(s)	581, 704, 710, 719, 722
Asp700I	GAANNNNTTC	1 cut(s)	366
AspLEI	GCGC	1 cut(s)	622
AspS9I	GGNCC	1 cut(s)	143
AsuHPI	GGTGA	2 cut(s)	284, 625
BanI	GGYRCC	1 cut(s)	619
BbvI	GCAGC	5 cut(s)	568, 691, 697, 731, 734
BccI	CCATC	3 cut(s)	258, 616, 740
BciT130I	CCWGG	1 cut(s)	576
BclI	TGATCA	1 cut(s)	556
BcoDI	GTCTC	1 cut(s)	677
BfaI	CTAG	1 cut(s)	639
BfoI	RGCGCY	1 cut(s)	623
BisI	GCNGC	6 cut(s)	582, 705, 708, 711, 720, 723
BlsI	GCNGC	6 cut(s)	583, 706, 709, 712, 721, 724
Bme1390I	CCNGG	1 cut(s)	576
BmgT120I	GGNCC	1 cut(s)	143
BmiI	GGNNCC	1 cut(s)	621
BmrFI	CCNGG	1 cut(s)	576
BmsI	GCATC	4 cut(s)	393, 611, 722, 778
BpmI	CTGGAG	1 cut(s)	708
BsaBI	GATNNNNATC	1 cut(s)	306
BsaHI	GRCGYC	1 cut(s)	620
Bsc4I	CCNNNNNNNGG	3 cut(s)	83, 224, 317
Bse1I	ACTGG	4 cut(s)	457, 590, 621, 691
Bse3DI	GCAATG	1 cut(s)	258
Bse8I	GATNNNNATC	1 cut(s)	306
BseBI	CCWGG	1 cut(s)	576
BseGI	GGATG	3 cut(s)	250, 602, 608
BseJI	GATNNNNATC	1 cut(s)	306
BseLI	CCNNNNNNNGG	3 cut(s)	83, 224, 317
BseMI	GCAATG	1 cut(s)	258
BseNI	ACTGG	4 cut(s)	457, 590, 621, 691
BseRI	GAGGAG	2 cut(s)	207, 437
BseXI	GCAGC	5 cut(s)	568, 691, 697, 731, 734
BsgI	GTGCAG	1 cut(s)	498
BshFI	GGCC	1 cut(s)	145
BshNI	GGYRCC	1 cut(s)	619
BslFI	GGGAC	1 cut(s)	215
BslI	CCNNNNNNNGG	3 cut(s)	83, 224, 317
BsmAI	GTCTC	1 cut(s)	677
BsmFI	GGGAC	1 cut(s)	215
BsmI	GAATGC	1 cut(s)	556
BsnI	GGCC	1 cut(s)	145
Bsp143I	GATC	2 cut(s)	556, 655
BspACI	CCGC	4 cut(s)	178, 707, 750, 770
BspANI	GGCC	1 cut(s)	145
BspLI	GGNNCC	1 cut(s)	621
BspPI	GGATC	1 cut(s)	663
BspT107I	GGYRCC	1 cut(s)	619
BsrDI	GCAATG	1 cut(s)	258
BsrI	ACTGG	4 cut(s)	457, 590, 621, 691
BssMI	GATC	2 cut(s)	556, 655
BssNI	GRCGYC	1 cut(s)	620
Bst2UI	CCWGG	1 cut(s)	576
Bst4CI	ACNGT	3 cut(s)	272, 631, 736
Bst6I	CTCTTC	2 cut(s)	53, 794
BstACI	GRCGYC	1 cut(s)	620
BstAPI	GCANNNNNTGC	2 cut(s)	437, 578
BstC8I	GCNNGC	3 cut(s)	147, 397, 663
BstDEI	CTNAG	1 cut(s)	240
BstENI	CCTNNNNNAGG	2 cut(s)	81, 222
BstF5I	GGATG	3 cut(s)	250, 602, 608
BstH2I	RGCGCY	1 cut(s)	623
BstHHI	GCGC	1 cut(s)	622
BstKTI	GATC	2 cut(s)	559, 658
BstMAI	GTCTC	1 cut(s)	677
BstMBI	GATC	2 cut(s)	556, 655
BstMWI	GCNNNNNNNGC	7 cut(s)	437, 578, 658, 671, 710, 716, 719
BstNI	CCWGG	1 cut(s)	576
BstNSI	RCATGY	2 cut(s)	332, 440
BstSCI	CCNGG	1 cut(s)	574
BstV1I	GCAGC	5 cut(s)	568, 691, 697, 731, 734
BsuRI	GGCC	1 cut(s)	145
BtsCI	GGATG	3 cut(s)	250, 602, 608
BtsIMutI	CAGTG	4 cut(s)	515, 545, 597, 614
Cac8I	GCNNGC	3 cut(s)	147, 397, 663
CaiI	CAGNNNCTG	1 cut(s)	575
CfoI	GCGC	1 cut(s)	622
Cfr13I	GGNCC	1 cut(s)	143
CsiI	ACCWGGT	1 cut(s)	574
Csp6I	GTAC	1 cut(s)	153
CviAII	CATG	4 cut(s)	181, 329, 437, 461
CviQI	GTAC	1 cut(s)	153
DdeI	CTNAG	1 cut(s)	240
DinI	GGCGCC	1 cut(s)	621
DpnI	GATC	2 cut(s)	558, 657
DpnII	GATC	2 cut(s)	556, 655
DraI	TTTAAA	2 cut(s)	484, 807
DraIII	CACNNNGTG	1 cut(s)	578
Eam1104I	CTCTTC	2 cut(s)	53, 794
EarI	CTCTTC	2 cut(s)	53, 794
EciI	GGCGGA	2 cut(s)	765, 785
Eco57I	CTGAAG	1 cut(s)	102
EcoNI	CCTNNNNNAGG	2 cut(s)	81, 222
EcoRII	CCWGG	1 cut(s)	574
EgeI	GGCGCC	1 cut(s)	621
EheI	GGCGCC	1 cut(s)	621
FaeI	CATG	4 cut(s)	184, 332, 440, 464
FaqI	GGGAC	1 cut(s)	215
FatI	CATG	4 cut(s)	180, 328, 436, 460
FbaI	TGATCA	1 cut(s)	556
FblI	GTMKAC	1 cut(s)	506
Fnu4HI	GCNGC	6 cut(s)	582, 705, 708, 711, 720, 723
FokI	GGATG	3 cut(s)	237, 589, 595
Fsp4HI	GCNGC	6 cut(s)	582, 705, 708, 711, 720, 723
FspBI	CTAG	1 cut(s)	639
GlaI	GCGC	1 cut(s)	621
GluI	GCNGC	6 cut(s)	582, 705, 708, 711, 720, 723
GsuI	CTGGAG	1 cut(s)	708
HaeII	RGCGCY	1 cut(s)	623
HaeIII	GGCC	1 cut(s)	145
HhaI	GCGC	1 cut(s)	622
Hin1I	GRCGYC	1 cut(s)	620
Hin1II	CATG	4 cut(s)	184, 332, 440, 464
Hin6I	GCGC	1 cut(s)	620
HinP1I	GCGC	1 cut(s)	620
HincII	GTYRAC	3 cut(s)	103, 286, 507
HindII	GTYRAC	3 cut(s)	103, 286, 507
HinfI	GANTC	6 cut(s)	61, 71, 307, 374, 456, 503
HpaI	GTTAAC	1 cut(s)	103
HphI	GGTGA	2 cut(s)	284, 625
Hpy166II	GTNNAC	3 cut(s)	103, 286, 507
Hpy188I	TCNGA	3 cut(s)	336, 347, 502
Hpy188III	TCNNGA	5 cut(s)	65, 80, 235, 371, 410
Hpy8I	GTNNAC	3 cut(s)	103, 286, 507
HpyAV	CCTTC	3 cut(s)	43, 77, 134
HpyCH4III	ACNGT	3 cut(s)	272, 631, 736
HpyCH4V	TGCA	6 cut(s)	431, 440, 464, 515, 602, 713
HpyF10VI	GCNNNNNNNGC	7 cut(s)	437, 578, 658, 671, 710, 716, 719
HpyF3I	CTNAG	1 cut(s)	240
Hsp92I	GRCGYC	1 cut(s)	620
Hsp92II	CATG	4 cut(s)	184, 332, 440, 464
HspAI	GCGC	1 cut(s)	620
KasI	GGCGCC	1 cut(s)	619
Ksp22I	TGATCA	1 cut(s)	556
KspAI	GTTAAC	1 cut(s)	103
Kzo9I	GATC	2 cut(s)	556, 655
LmnI	GCTCC	2 cut(s)	491, 679
Lsp1109I	GCAGC	5 cut(s)	568, 691, 697, 731, 734
LweI	GCATC	4 cut(s)	393, 611, 722, 778
MabI	ACCWGGT	1 cut(s)	574
MaeI	CTAG	1 cut(s)	639
MaeIII	GTNAC	1 cut(s)	631
MalI	GATC	2 cut(s)	558, 657
MboI	GATC	2 cut(s)	556, 655
MboII	GAAGA	3 cut(s)	70, 790, 811
MluCI	AATT	3 cut(s)	33, 53, 415
Mly113I	GGCGCC	1 cut(s)	620
MlyI	GAGTC	2 cut(s)	70, 512
MnlI	CCTC	5 cut(s)	87, 228, 415, 635, 732
MroXI	GAANNNNTTC	1 cut(s)	366
MseI	TTAA	4 cut(s)	36, 102, 483, 806
MspA1I	CMGCKG	2 cut(s)	149, 665
MspR9I	CCNGG	1 cut(s)	576
Mva1269I	GAATGC	1 cut(s)	556
MvaI	CCWGG	1 cut(s)	576
MwoI	GCNNNNNNNGC	7 cut(s)	437, 578, 658, 671, 710, 716, 719
NarI	GGCGCC	1 cut(s)	620
NdeII	GATC	2 cut(s)	556, 655
NlaIII	CATG	4 cut(s)	184, 332, 440, 464
NlaIV	GGNNCC	1 cut(s)	621
NmuCI	GTSAC	1 cut(s)	631
NspI	RCATGY	2 cut(s)	332, 440
PciI	ACATGT	1 cut(s)	328
PctI	GAATGC	1 cut(s)	556
PdmI	GAANNNNTTC	1 cut(s)	366
PfeI	GAWTC	4 cut(s)	71, 307, 374, 456
PflMI	CCANNNNNTGG	1 cut(s)	317
PkrI	GCNGC	6 cut(s)	583, 706, 709, 712, 721, 724
PleI	GAGTC	2 cut(s)	69, 511
PluTI	GGCGCC	1 cut(s)	623
PpsI	GAGTC	2 cut(s)	69, 511
PscI	ACATGT	1 cut(s)	328
Psp6I	CCWGG	1 cut(s)	574
PspGI	CCWGG	1 cut(s)	574
PspN4I	GGNNCC	1 cut(s)	621
PspPI	GGNCC	1 cut(s)	143
PstNI	CAGNNNCTG	1 cut(s)	575
PvuII	CAGCTG	2 cut(s)	149, 665
RsaI	GTAC	1 cut(s)	154
RsaNI	GTAC	1 cut(s)	153
SalI	GTCGAC	1 cut(s)	505
SaqAI	TTAA	4 cut(s)	36, 102, 483, 806
SatI	GCNGC	6 cut(s)	582, 705, 708, 711, 720, 723
Sau3AI	GATC	2 cut(s)	556, 655
Sau96I	GGNCC	1 cut(s)	143
SchI	GAGTC	2 cut(s)	70, 512
ScrFI	CCNGG	1 cut(s)	576
SetI	ASST	6 cut(s)	151, 293, 496, 577, 667, 676
SexAI	ACCWGGT	1 cut(s)	574
SfaNI	GCATC	4 cut(s)	393, 611, 722, 778
SfoI	GGCGCC	1 cut(s)	621
Sse9I	AATT	3 cut(s)	33, 53, 415
SsiI	CCGC	4 cut(s)	178, 707, 750, 770
SspDI	GGCGCC	1 cut(s)	619
SspMI	CTAG	1 cut(s)	639
StyD4I	CCNGG	1 cut(s)	574
TaaI	ACNGT	3 cut(s)	272, 631, 736
TaqI	TCGA	2 cut(s)	506, 542
TasI	AATT	3 cut(s)	33, 53, 415
TauI	GCSGC	1 cut(s)	710
TfiI	GAWTC	4 cut(s)	71, 307, 374, 456
Tru1I	TTAA	4 cut(s)	36, 102, 483, 806
Tru9I	TTAA	4 cut(s)	36, 102, 483, 806
TscAI	CASTG	4 cut(s)	522, 552, 597, 621
TseFI	GTSAC	1 cut(s)	631
TseI	GCWGC	5 cut(s)	581, 704, 710, 719, 722
Tsp45I	GTSAC	1 cut(s)	631
TspDTI	ATGAA	4 cut(s)	27, 84, 197, 402
TspRI	CASTG	4 cut(s)	522, 552, 597, 621
Van91I	CCANNNNNTGG	1 cut(s)	317
XagI	CCTNNNNNAGG	2 cut(s)	81, 222
XceI	RCATGY	2 cut(s)	332, 440
XmiI	GTMKAC	1 cut(s)	506
XmnI	GAANNNNTTC	1 cut(s)	366
XspI	CTAG	1 cut(s)	639

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.