AT5G05310

TLC ATP/ADP transporter

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
5
OG0002256
Physical Location & Seq
Forward (+)
1571144 .. 1574677
3534 bp
Loading structure...
UTR
Exon/CDS
Intron
AT5G05310.4

Sequence Viewer

Length: 1410 bp
ATGGCAGCCAGAATTCGATTAGATGCGGTAATATCCACGATAGTAACGGTGCACCCGCACGAGCTTCCGGCGTTGCTCCACTCCTCTTCCTGCTTCTTCTTCATATTGAGCGCGTATTTCGTAGTTCTTCCACTCCGCGACGAAGGAGCAATATCGCTGGGATTATCAAAGCTACCAGGCCTTTTCGTTGGATCATTGTTTCTCACTCTCATTGCTGCTCCTCTTTCCACCTTCATCTTCTCTTTGCCCAATTTGTCCAAATCCAAGGCTTTGGTTATAATTCATAGATTCTTTAGTCTATCACTTGTTCTATGTTTCCTTCTTTGGATGGCCTCCCCGACAGAGTCTAATTCAAAGGATGCAGTTGAGGCGGCTTCCGGCCTTACAAATGATGGAGCTAATGCTGCTACTGGATGGGACAACCATGGCTGGTTTTACATTTCTGTCCGGGTTGGATTTTTCCTTTGGGTTGCGTTGCTTAATCTTGTCGCTATTTCTTCAACGTGGGCTAGAATAATAGACGTTATGGATATTCAGTCAGGTGCAAGATTGTTTGGTTTTGTTGGTGCTGGTGCTACCCTTGGACAGCTTTTTGGATCTGTATTTGCTGCTGCCACTGCTTGGATGGGTCCATATTTACTTCTATTTGCTGCTCTTTTGATGGAATTTGCTGCACAGTCTTCAAAAGGGATCACTAATGATATTTCCCAGTCCTCTGAGGAGTTGTCTCCTCTAAGGGGAACTGATAATGATCATCAACGTGAGAGAAAACAGGAGGCTACTTCTCCAAAAGTTGGTTCTCCAAAAGTTGCTTCTCCTAAATCGCCCATCTCCACAACCAGACCTCAGTTTTGGGCCATCTTAGATGGAATGAGACTTATACTAGCATCACCTTATCTTTTGCTCGTGTCTTTGTTTCTTTGGCTCGGTGCGGTCATCTCCTCATTCTTCTATTTCCAAAAAGTGAATATAATTGCTACGACAATCAAATCATCCATTGGTCGAAGAAGACTGTTTGCCCAGATAAACAGCTTTGTTGCAGTTTTCATACTCATTGGACAACTGACTTTAACGGGGCGTATCTTGACTGTAGCTGGTGTCACGGTTGCAATATCTGCATCTCCATTTGTTGCACTTGGGAATTTGGTTGCTATTGCCATATGGCCAACTTGGGTTACGGTTGCTGTGTCTGAAACCCTGAGAAAGGTGACAACTTATGTTGTAACTAGACCTGGAAGGGAACTCTTGTTCACCGTTGTCTCGCAAGACGAGAAATACAAAGCTAAGGTATGCATAGATGTAATTGTTCAACGGCTTGGAGATGCTGCAGCGGCGGGACTATTTGAAGTCCTTACCATTGCTCTTGGCGGTCAAACGTCAACTGCTTCACTCTATGCCCTGCCAGTATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
TLC

Protein Analysis

469

Amino Acids

50.57

Weight (kDa)

9.42

Isoelectric Point (pI)

37.96

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 278
AccB7I CCANNNNNTGG 2 cut(s) 621, 794
AccII CGCG 2 cut(s) 113, 138
AciI CCGC 8 cut(s) 26, 56, 136, 371, 932, 1331, 1334, 1368
AclWI GGATC 3 cut(s) 199, 604, 698
AcoI YGGCCR 1 cut(s) 1163
AcsI RAATTY 3 cut(s) 12, 665, 1141
AfiI CCNNNNNNNGG 4 cut(s) 621, 737, 794, 1204
AgsI TTSAA 5 cut(s) 354, 501, 684, 1310, 1346
AjnI CCWGG 2 cut(s) 175, 1231
AjuI GAANNNNNNNTTGG 4 cut(s) 781, 796, 813, 828
AloI GAACNNNNNNTCC 2 cut(s) 1232, 1264
AluBI AGCT 7 cut(s) 64, 172, 398, 589, 1032, 1094, 1283
AluI AGCT 7 cut(s) 64, 172, 398, 589, 1032, 1094, 1283
Alw21I GWGCWC 1 cut(s) 54
Alw26I GTCTC 3 cut(s) 732, 868, 1264
Alw44I GTGCAC 1 cut(s) 50
AlwI GGATC 3 cut(s) 199, 604, 698
AoxI GGCC 5 cut(s) 178, 330, 379, 855, 1163
ApaLI GTGCAC 1 cut(s) 50
ApeKI GCWGC 9 cut(s) 5, 215, 404, 608, 611, 650, 671, 1325, 1328
ApoI RAATTY 3 cut(s) 12, 665, 1141
ArsI GACNNNNNNTTYG 2 cut(s) 834, 866
AspLEI GCGC 1 cut(s) 113
AspS9I GGNCC 2 cut(s) 629, 855
AsuC2I CCSGG 1 cut(s) 449
AsuHPI GGTGA 3 cut(s) 882, 1219, 1243
AvaII GGWCC 1 cut(s) 629
BaeGI GKGCMC 1 cut(s) 54
BalI TGGCCA 1 cut(s) 1165
BauI CACGAG 2 cut(s) 59, 905
BbsI GAAGAC 2 cut(s) 672, 1015
Bbv12I GWGCWC 1 cut(s) 54
BbvI GCAGC 9 cut(s) 17, 202, 391, 595, 598, 637, 658, 1312, 1340
BccI CCATC 8 cut(s) 322, 386, 408, 619, 655, 836, 860, 866
BceAI ACGGC 1 cut(s) 1328
BciT130I CCWGG 2 cut(s) 177, 1233
BclI TGATCA 1 cut(s) 751
BcnI CCSGG 1 cut(s) 449
BcoDI GTCTC 3 cut(s) 732, 868, 1264
BfaI CTAG 3 cut(s) 510, 884, 1227
BfmI CTRYAG 2 cut(s) 1089, 1326
Bme1390I CCNGG 3 cut(s) 177, 449, 1233
Bme18I GGWCC 1 cut(s) 629
BmgT120I GGNCC 2 cut(s) 629, 855
BmiI GGNNCC 1 cut(s) 630
BmrFI CCNGG 3 cut(s) 177, 449, 1233
BmrI ACTGGG 1 cut(s) 703
BmsI GCATC 5 cut(s) 13, 349, 896, 1127, 1312
BmuI ACTGGG 1 cut(s) 703
BpiI GAAGAC 2 cut(s) 672, 1015
Bpu10I CCTNAGC 1 cut(s) 1284
BpuMI CCSGG 1 cut(s) 449
BsaBI GATNNNNATC 1 cut(s) 750
BsaJI CCNNGG 3 cut(s) 264, 424, 580
Bsc4I CCNNNNNNNGG 4 cut(s) 621, 737, 794, 1204
Bse1I ACTGG 3 cut(s) 415, 709, 1403
Bse3DI GCAATG 2 cut(s) 210, 1356
Bse8I GATNNNNATC 1 cut(s) 750
BseBI CCWGG 2 cut(s) 177, 1233
BseDI CCNNGG 3 cut(s) 264, 424, 580
BseGI GGATG 5 cut(s) 333, 364, 419, 630, 992
BseJI GATNNNNATC 1 cut(s) 750
BseLI CCNNNNNNNGG 4 cut(s) 621, 737, 794, 1204
BseMI GCAATG 2 cut(s) 210, 1356
BseMII CTCAG 3 cut(s) 708, 860, 1190
BseNI ACTGG 3 cut(s) 415, 709, 1403
BseRI GAGGAG 5 cut(s) 73, 210, 720, 734, 931
BseSI GKGCMC 1 cut(s) 54
BseXI GCAGC 9 cut(s) 17, 202, 391, 595, 598, 637, 658, 1312, 1340
BseYI CCCAGC 1 cut(s) 157
BsgI GTGCAG 1 cut(s) 657
Bsh1236I CGCG 2 cut(s) 113, 138
BshFI GGCC 5 cut(s) 180, 332, 381, 857, 1165
BsiHKAI GWGCWC 1 cut(s) 54
BsiSI CCGG 3 cut(s) 68, 378, 448
BslFI GGGAC 2 cut(s) 431, 1350
BslI CCNNNNNNNGG 4 cut(s) 621, 737, 794, 1204
BsmAI GTCTC 3 cut(s) 732, 868, 1264
BsmFI GGGAC 2 cut(s) 431, 1350
BsnI GGCC 5 cut(s) 180, 332, 381, 857, 1165
Bsp1286I GDGCHC 1 cut(s) 54
Bsp143I GATC 4 cut(s) 191, 596, 690, 751
Bsp19I CCATGG 1 cut(s) 424
BspACI CCGC 8 cut(s) 26, 56, 136, 371, 932, 1331, 1334, 1368
BspANI GGCC 5 cut(s) 180, 332, 381, 857, 1165
BspCNI CTCAG 3 cut(s) 709, 859, 1191
BspFNI CGCG 2 cut(s) 113, 138
BspLI GGNNCC 1 cut(s) 630
BspMAI CTGCAG 1 cut(s) 1330
BspPI GGATC 3 cut(s) 199, 604, 698
BsrDI GCAATG 2 cut(s) 210, 1356
BsrI ACTGG 3 cut(s) 415, 709, 1403
BssECI CCNNGG 3 cut(s) 264, 424, 580
BssMI GATC 4 cut(s) 191, 596, 690, 751
BssSI CACGAG 2 cut(s) 59, 905
BssT1I CCWWGG 3 cut(s) 264, 424, 580
Bst2BI CACGAG 2 cut(s) 59, 905
Bst2UI CCWGG 2 cut(s) 177, 1233
Bst4CI ACNGT 7 cut(s) 49, 678, 1014, 1090, 1105, 1180, 1255
Bst6I CTCTTC 1 cut(s) 91
BstAPI GCANNNNNTGC 1 cut(s) 1115
BstDEI CTNAG 6 cut(s) 717, 734, 846, 862, 1199, 1284
BstDSI CCRYGG 1 cut(s) 424
BstENI CCTNNNNNAGG 1 cut(s) 1202
BstF5I GGATG 5 cut(s) 333, 364, 419, 630, 992
BstFNI CGCG 2 cut(s) 113, 138
BstHHI GCGC 1 cut(s) 113
BstKTI GATC 4 cut(s) 194, 599, 693, 754
BstMAI GTCTC 3 cut(s) 732, 868, 1264
BstMBI GATC 4 cut(s) 191, 596, 690, 751
BstMWI GCNNNNNNNGC 5 cut(s) 368, 404, 617, 1115, 1331
BstNI CCWGG 2 cut(s) 177, 1233
BstSCI CCNGG 3 cut(s) 175, 447, 1231
BstSFI CTRYAG 2 cut(s) 1089, 1326
BstSLI GKGCMC 1 cut(s) 54
BstUI CGCG 2 cut(s) 113, 138
BstV1I GCAGC 9 cut(s) 17, 202, 391, 595, 598, 637, 658, 1312, 1340
BstV2I GAAGAC 2 cut(s) 672, 1015
BstX2I RGATCY 1 cut(s) 596
BstXI CCANNNNNNTGG 1 cut(s) 271
BstYI RGATCY 1 cut(s) 596
BsuRI GGCC 5 cut(s) 180, 332, 381, 857, 1165
BtgI CCRYGG 1 cut(s) 424
BtsCI GGATG 5 cut(s) 333, 364, 419, 630, 992
BtsI GCAGTG 1 cut(s) 615
BtsIMutI CAGTG 1 cut(s) 615
CfoI GCGC 1 cut(s) 113
Cfr13I GGNCC 2 cut(s) 629, 855
CviAII CATG 1 cut(s) 425
DdeI CTNAG 6 cut(s) 717, 734, 846, 862, 1199, 1284
DpnI GATC 4 cut(s) 193, 598, 692, 753
DpnII GATC 4 cut(s) 191, 596, 690, 751
EaeI YGGCCR 1 cut(s) 1163
Eam1104I CTCTTC 1 cut(s) 91
EarI CTCTTC 1 cut(s) 91
Eco130I CCWWGG 3 cut(s) 264, 424, 580
Eco147I AGGCCT 1 cut(s) 180
Eco47I GGWCC 1 cut(s) 629
EcoNI CCTNNNNNAGG 1 cut(s) 1202
EcoRI GAATTC 1 cut(s) 12
EcoRII CCWGG 2 cut(s) 175, 1231
EcoT14I CCWWGG 3 cut(s) 264, 424, 580
EcoT22I ATGCAT 1 cut(s) 1295
ErhI CCWWGG 3 cut(s) 264, 424, 580
FaeI CATG 1 cut(s) 428
FaqI GGGAC 2 cut(s) 431, 1350
FatI CATG 1 cut(s) 424
FauI CCCGC 2 cut(s) 63, 1327
FauNDI CATATG 1 cut(s) 1160
FbaI TGATCA 1 cut(s) 751
FokI GGATG 5 cut(s) 340, 371, 426, 637, 979
FspBI CTAG 3 cut(s) 510, 884, 1227
GlaI GCGC 1 cut(s) 112
GsaI CCCAGC 1 cut(s) 161
HaeIII GGCC 5 cut(s) 180, 332, 381, 857, 1165
HapII CCGG 3 cut(s) 68, 378, 448
HhaI GCGC 1 cut(s) 113
Hin1II CATG 1 cut(s) 428
Hin6I GCGC 1 cut(s) 111
HinP1I GCGC 1 cut(s) 111
HincII GTYRAC 1 cut(s) 1380
HindII GTYRAC 1 cut(s) 1380
HinfI GANTC 2 cut(s) 288, 344
HpaII CCGG 3 cut(s) 68, 378, 448
HphI GGTGA 3 cut(s) 882, 1219, 1243
Hpy166II GTNNAC 3 cut(s) 52, 1251, 1380
Hpy188I TCNGA 2 cut(s) 718, 1192
Hpy188III TCNNGA 1 cut(s) 1084
Hpy8I GTNNAC 3 cut(s) 52, 1251, 1380
Hpy99I CGWCG 1 cut(s) 143
HpyAV CCTTC 4 cut(s) 137, 241, 329, 1230
HpyCH4III ACNGT 7 cut(s) 49, 678, 1014, 1090, 1105, 1180, 1255
HpyCH4IV ACGT 4 cut(s) 503, 522, 760, 1376
HpyF10VI GCNNNNNNNGC 5 cut(s) 368, 404, 617, 1115, 1331
HpyF3I CTNAG 6 cut(s) 717, 734, 846, 862, 1199, 1284
HpySE526I ACGT 4 cut(s) 503, 522, 760, 1376
Hsp92II CATG 1 cut(s) 428
HspAI GCGC 1 cut(s) 111
Ksp22I TGATCA 1 cut(s) 751
Kzo9I GATC 4 cut(s) 191, 596, 690, 751
LmnI GCTCC 4 cut(s) 81, 146, 223, 395
Lsp1109I GCAGC 9 cut(s) 17, 202, 391, 595, 598, 637, 658, 1312, 1340
LweI GCATC 5 cut(s) 13, 349, 896, 1127, 1312
MaeI CTAG 3 cut(s) 510, 884, 1227
MaeII ACGT 4 cut(s) 503, 522, 760, 1376
MaeIII GTNAC 5 cut(s) 43, 1099, 1174, 1207, 1222
MalI GATC 4 cut(s) 193, 598, 692, 753
MboI GATC 4 cut(s) 191, 596, 690, 751
MflI RGATCY 1 cut(s) 596
MhlI GDGCHC 1 cut(s) 54
MlsI TGGCCA 1 cut(s) 1165
MluCI AATT 8 cut(s) 12, 250, 279, 349, 665, 972, 1141, 1302
MluNI TGGCCA 1 cut(s) 1165
MlyI GAGTC 1 cut(s) 353
MmeI TCCRAC 2 cut(s) 169, 433
Mox20I TGGCCA 1 cut(s) 1165
Mph1103I ATGCAT 1 cut(s) 1295
MscI TGGCCA 1 cut(s) 1165
MseI TTAA 2 cut(s) 480, 1070
MslI CAYNNNNRTG 1 cut(s) 759
Msp20I TGGCCA 1 cut(s) 1165
MspA1I CMGCKG 1 cut(s) 1331
MspI CCGG 3 cut(s) 68, 378, 448
MspR9I CCNGG 3 cut(s) 177, 449, 1233
MvaI CCWGG 2 cut(s) 177, 1233
MvnI CGCG 2 cut(s) 113, 138
MwoI GCNNNNNNNGC 5 cut(s) 368, 404, 617, 1115, 1331
NciI CCSGG 1 cut(s) 449
NcoI CCATGG 1 cut(s) 424
NdeI CATATG 1 cut(s) 1160
NdeII GATC 4 cut(s) 191, 596, 690, 751
NlaIII CATG 1 cut(s) 428
NlaIV GGNNCC 1 cut(s) 630
NmuCI GTSAC 2 cut(s) 1099, 1207
NsiI ATGCAT 1 cut(s) 1295
PceI AGGCCT 1 cut(s) 180
PfeI GAWTC 1 cut(s) 288
PflFI GACNNNGTC 1 cut(s) 343
PflMI CCANNNNNTGG 2 cut(s) 621, 794
PleI GAGTC 1 cut(s) 352
PpsI GAGTC 1 cut(s) 352
PsiI TTATAA 1 cut(s) 278
Psp6I CCWGG 2 cut(s) 175, 1231
PspFI CCCAGC 1 cut(s) 157
PspGI CCWGG 2 cut(s) 175, 1231
PspN4I GGNNCC 1 cut(s) 630
PspPI GGNCC 2 cut(s) 629, 855
PstI CTGCAG 1 cut(s) 1330
PsuI RGATCY 1 cut(s) 596
PsyI GACNNNGTC 1 cut(s) 343
RseI CAYNNNNRTG 1 cut(s) 759
SaqAI TTAA 2 cut(s) 480, 1070
Sau3AI GATC 4 cut(s) 191, 596, 690, 751
Sau96I GGNCC 2 cut(s) 629, 855
SchI GAGTC 1 cut(s) 353
ScrFI CCNGG 3 cut(s) 177, 449, 1233
SduI GDGCHC 1 cut(s) 54
SfaNI GCATC 5 cut(s) 13, 349, 896, 1127, 1312
SfcI CTRYAG 2 cut(s) 1089, 1326
SinI GGWCC 1 cut(s) 629
SmiMI CAYNNNNRTG 1 cut(s) 759
Sse9I AATT 8 cut(s) 12, 250, 279, 349, 665, 972, 1141, 1302
SseBI AGGCCT 1 cut(s) 180
SsiI CCGC 8 cut(s) 26, 56, 136, 371, 932, 1331, 1334, 1368
SspMI CTAG 3 cut(s) 510, 884, 1227
StuI AGGCCT 1 cut(s) 180
StyD4I CCNGG 3 cut(s) 175, 447, 1231
StyI CCWWGG 3 cut(s) 264, 424, 580
TaaI ACNGT 7 cut(s) 49, 678, 1014, 1090, 1105, 1180, 1255
TaiI ACGT 4 cut(s) 506, 525, 763, 1379
TaqI TCGA 2 cut(s) 16, 1003
TasI AATT 8 cut(s) 12, 250, 279, 349, 665, 972, 1141, 1302
TauI GCSGC 2 cut(s) 374, 1334
TfiI GAWTC 1 cut(s) 288
Tru1I TTAA 2 cut(s) 480, 1070
Tru9I TTAA 2 cut(s) 480, 1070
TscAI CASTG 1 cut(s) 622
TseFI GTSAC 2 cut(s) 1099, 1207
TseI GCWGC 9 cut(s) 5, 215, 404, 608, 611, 650, 671, 1325, 1328
Tsp45I GTSAC 2 cut(s) 1099, 1207
TspDTI ATGAA 4 cut(s) 91, 223, 272, 1036
TspRI CASTG 1 cut(s) 622
Tth111I GACNNNGTC 1 cut(s) 343
Van91I CCANNNNNTGG 2 cut(s) 621, 794
VneI GTGCAC 1 cut(s) 50
VpaK11BI GGWCC 1 cut(s) 629
XagI CCTNNNNNAGG 1 cut(s) 1202
XapI RAATTY 3 cut(s) 12, 665, 1141
XcmI CCANNNNNNNNNTGG 1 cut(s) 622
XspI CTAG 3 cut(s) 510, 884, 1227
Zsp2I ATGCAT 1 cut(s) 1295
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.