Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr05

Orthogroup ID

OG0002256

Physical Location & Seq

Genomic Coordinates Forward (+)

45391455 .. 45392918

Gene Structure 1464 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD05G1328700.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 783 bp

ATGAGCAGGTCCCGATTGGATACAATCCTCTCCACATTCGTCGTGGTGCACCCTCACGAGATCTCAGCTCTCCTCCACTCCTCATCCTGCTTCTTCTTCGTAAGCTCTCCTAATTCTCCAGTCCCTTTGCTAAATTTCGAAAACTGTATTTTGTGCGCTTACTTTGTAGTGCTCCCGCTGCGCGATGAGGGTGCAATTTCCTTAGGCCTGTCGAACCTGCCGAGCCTGTTTGTGGGGTCATTGGTCCTCACATCGATTGCCGCACCAGTTGCAACTCTCATCTTCTCTTTGCCCAACGTTTCGAAAGGCAAGGCTTTGGTTTTGATGCTCAGGTTTTTTAGTGTATCACTTGTTGCATTCATCTTCTTTCTATGGCGTGCTTCGTCAGCTGGATCACAAGCTGAGGTGAAGGGCTTGGTCAGTATAGACACCGCGTCAGTAAATGACGAAAAGGTTGTTGTTAATCAAGCTGGTACAGCATATTCTGTAGCATGGGAGAACCTTGGCCGGTTGTATGTCTCGGTCAGAATTGCATTGTTCCTCTGGATTGCCCTACTTAATCTAATTACAATTTCCTCGACTTGGGCTAGAATAATCGATGTCATGGACTTTGAGATGTGTATTCAGTCAGGTTCAAGATTATTTGGTTTTATTGGTGCCGGTGCCACACTAGGCCAGCTTTTTGGGTCATTGTTTGCGACGGGAATGGCTAGGTTGGGGCCATGTATGTTTTCTTATTCAGTCTTTTGGAATTTGATAGTACCTGCGTGTGATATGTCTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

TLC

Protein Analysis

261

Amino Acids

28.14

Weight (kDa)

6.81

Isoelectric Point (pI)

38.38

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002256)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G05310 AT5G05310 AT5G05310 AT5G05310 AT5G05310 AT5G05310 AT5G05310 AT5G05310 AT5G05310
fragaria_vesca	FvH4_7g25670 FvH4_7g25670 FvH4_7g25670 FvH4_7g25670 FvH4_7g25670 FvH4_7g25670 FvH4_7g25670 FvH4_7g25670
malus_domestica	MD01G1164100.v1.1 MD05G1328700.v1.1 MD07G1231800.v1.1 MD07G1231900.v1.1
prunus_persica	Prupe.2G261900_v2.0.a1 Prupe.2G261900_v2.0.a1 Prupe.2G261900_v2.0.a1 Prupe.2G261900_v2.0.a1 Prupe.2G261900_v2.0.a1
pyrus_communis	pycom01g17840 pycom07g20960
rosa_chinensis	RchiOBHm_Chr1g0371881 RchiOBHm_Chr1g0371891
rosa_laevigata	RLG00000026938
rosa_multiflora	Rmu_sc0001755.1_g000047
rosa_roxburghii	Rroxscaffold_4G00285400
rosa_rugosa	Rorug01G0366800 Rorug01G0366900 Rorug01G0366900 Rorug01G0367000 Rorug01G0367100
rosa_samantha	Rh1AG376800 Rh1BG340100 Rh1CG353100 Rh1DG371100
rosa_wichuraiana	Rw1G033150

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	2 cut(s)	225, 772
AccB1I	GGYRCC	2 cut(s)	656, 662
AccII	CGCG	2 cut(s)	183, 434
AciI	CCGC	3 cut(s)	176, 261, 432
AclI	AACGTT	1 cut(s)	297
AclWI	GGATC	1 cut(s)	400
AcoI	YGGCCR	1 cut(s)	505
AcsI	RAATTY	2 cut(s)	133, 751
AfaI	GTAC	2 cut(s)	475, 762
AfiI	CCNNNNNNNGG	2 cut(s)	232, 582
AgsI	TTSAA	1 cut(s)	636
AhdI	GACNNNNNGTC	1 cut(s)	433
AluBI	AGCT	6 cut(s)	68, 105, 389, 401, 470, 679
AluI	AGCT	6 cut(s)	68, 105, 389, 401, 470, 679
Alw21I	GWGCWC	2 cut(s)	51, 174
Alw26I	GTCTC	1 cut(s)	523
Alw44I	GTGCAC	1 cut(s)	47
AlwI	GGATC	1 cut(s)	400
AoxI	GGCC	4 cut(s)	205, 505, 673, 719
ApaLI	GTGCAC	1 cut(s)	47
ApeKI	GCWGC	1 cut(s)	178
ApoI	RAATTY	2 cut(s)	133, 751
AspLEI	GCGC	2 cut(s)	158, 183
AspS9I	GGNCC	3 cut(s)	9, 244, 719
AsuHPI	GGTGA	1 cut(s)	418
AsuII	TTCGAA	2 cut(s)	138, 302
AvaII	GGWCC	2 cut(s)	9, 244
AxyI	CCTNAGG	1 cut(s)	202
BaeGI	GKGCMC	1 cut(s)	51
BanI	GGYRCC	2 cut(s)	656, 662
BauI	CACGAG	1 cut(s)	56
Bbv12I	GWGCWC	2 cut(s)	51, 174
BbvCI	CCTCAGC	1 cut(s)	402
BbvI	GCAGC	1 cut(s)	165
BcgI	CGANNNNNNTGC	2 cut(s)	173, 207
BciVI	GTATCC	1 cut(s)	13
BcoDI	GTCTC	1 cut(s)	523
BfaI	CTAG	3 cut(s)	588, 671, 711
BfmI	CTRYAG	1 cut(s)	486
BfuAI	ACCTGC	2 cut(s)	225, 772
BfuI	GTATCC	1 cut(s)	13
BglII	AGATCT	1 cut(s)	60
BisI	GCNGC	2 cut(s)	179, 261
BlsI	GCNGC	2 cut(s)	180, 262
Bme18I	GGWCC	2 cut(s)	9, 244
BmeRI	GACNNNNNGTC	1 cut(s)	433
BmgT120I	GGNCC	3 cut(s)	9, 244, 719
BmiI	GGNNCC	4 cut(s)	11, 658, 664, 720
BmsI	GCATC	1 cut(s)	315
BpmI	CTGGAG	1 cut(s)	102
Bpu10I	CCTNAGC	2 cut(s)	329, 402
Bpu14I	TTCGAA	2 cut(s)	138, 302
Bsa29I	ATCGAT	2 cut(s)	254, 597
BsaJI	CCNNGG	1 cut(s)	502
Bsc4I	CCNNNNNNNGG	2 cut(s)	232, 582
Bse118I	RCCGGY	2 cut(s)	507, 659
Bse1I	ACTGG	2 cut(s)	119, 266
Bse21I	CCTNAGG	1 cut(s)	202
BseCI	ATCGAT	2 cut(s)	254, 597
BseDI	CCNNGG	1 cut(s)	502
BseGI	GGATG	1 cut(s)	83
BseLI	CCNNNNNNNGG	2 cut(s)	232, 582
BseMII	CTCAG	3 cut(s)	78, 343, 393
BseNI	ACTGG	2 cut(s)	119, 266
BseRI	GAGGAG	2 cut(s)	62, 70
BseSI	GKGCMC	1 cut(s)	51
BseXI	GCAGC	1 cut(s)	165
Bsh1236I	CGCG	2 cut(s)	183, 434
BshFI	GGCC	4 cut(s)	207, 507, 675, 721
BshNI	GGYRCC	2 cut(s)	656, 662
BshVI	ATCGAT	2 cut(s)	254, 597
BsiHKAI	GWGCWC	2 cut(s)	51, 174
BsiSI	CCGG	2 cut(s)	508, 660
BslFI	GGGAC	1 cut(s)	107
BslI	CCNNNNNNNGG	2 cut(s)	232, 582
BsmAI	GTCTC	1 cut(s)	523
BsmFI	GGGAC	1 cut(s)	107
BsmI	GAATGC	1 cut(s)	356
BsnI	GGCC	4 cut(s)	207, 507, 675, 721
Bsp119I	TTCGAA	2 cut(s)	138, 302
Bsp1286I	GDGCHC	2 cut(s)	51, 174
Bsp143I	GATC	2 cut(s)	60, 392
BspACI	CCGC	3 cut(s)	176, 261, 432
BspANI	GGCC	4 cut(s)	207, 507, 675, 721
BspCNI	CTCAG	3 cut(s)	77, 342, 394
BspDI	ATCGAT	2 cut(s)	254, 597
BspFNI	CGCG	2 cut(s)	183, 434
BspLI	GGNNCC	4 cut(s)	11, 658, 664, 720
BspMI	ACCTGC	2 cut(s)	225, 772
BspPI	GGATC	1 cut(s)	400
BspT104I	TTCGAA	2 cut(s)	138, 302
BspT107I	GGYRCC	2 cut(s)	656, 662
BsrFI	RCCGGY	2 cut(s)	507, 659
BsrI	ACTGG	2 cut(s)	119, 266
BssAI	RCCGGY	2 cut(s)	507, 659
BssECI	CCNNGG	1 cut(s)	502
BssMI	GATC	2 cut(s)	60, 392
BssSI	CACGAG	1 cut(s)	56
BssT1I	CCWWGG	1 cut(s)	502
Bst2BI	CACGAG	1 cut(s)	56
Bst4CI	ACNGT	1 cut(s)	146
BstAPI	GCANNNNNTGC	1 cut(s)	269
BstBI	TTCGAA	2 cut(s)	138, 302
BstC8I	GCNNGC	2 cut(s)	378, 677
BstDEI	CTNAG	4 cut(s)	64, 202, 329, 402
BstF5I	GGATG	1 cut(s)	83
BstFNI	CGCG	2 cut(s)	183, 434
BstHHI	GCGC	2 cut(s)	158, 183
BstKTI	GATC	2 cut(s)	63, 395
BstMAI	GTCTC	1 cut(s)	523
BstMBI	GATC	2 cut(s)	60, 392
BstMWI	GCNNNNNNNGC	4 cut(s)	178, 269, 386, 476
BstSFI	CTRYAG	1 cut(s)	486
BstSLI	GKGCMC	1 cut(s)	51
BstUI	CGCG	2 cut(s)	183, 434
BstV1I	GCAGC	1 cut(s)	165
BstX2I	RGATCY	1 cut(s)	60
BstXI	CCANNNNNNTGG	1 cut(s)	683
BstYI	RGATCY	1 cut(s)	60
Bsu15I	ATCGAT	2 cut(s)	254, 597
Bsu36I	CCTNAGG	1 cut(s)	202
BsuI	GTATCC	1 cut(s)	13
BsuRI	GGCC	4 cut(s)	207, 507, 675, 721
BsuTUI	ATCGAT	2 cut(s)	254, 597
BtgZI	GCGATG	1 cut(s)	198
BtsCI	GGATG	1 cut(s)	83
BveI	ACCTGC	2 cut(s)	225, 772
Cac8I	GCNNGC	2 cut(s)	378, 677
CfoI	GCGC	2 cut(s)	158, 183
Cfr10I	RCCGGY	2 cut(s)	507, 659
Cfr13I	GGNCC	3 cut(s)	9, 244, 719
ClaI	ATCGAT	2 cut(s)	254, 597
CseI	GACGC	1 cut(s)	423
Csp6I	GTAC	2 cut(s)	474, 761
CviAII	CATG	3 cut(s)	492, 604, 723
CviQI	GTAC	2 cut(s)	474, 761
DdeI	CTNAG	4 cut(s)	64, 202, 329, 402
DpnI	GATC	2 cut(s)	62, 394
DpnII	GATC	2 cut(s)	60, 392
DriI	GACNNNNNGTC	1 cut(s)	433
EaeI	YGGCCR	1 cut(s)	505
Eam1105I	GACNNNNNGTC	1 cut(s)	433
Eco130I	CCWWGG	1 cut(s)	502
Eco147I	AGGCCT	1 cut(s)	207
Eco47I	GGWCC	2 cut(s)	9, 244
Eco81I	CCTNAGG	1 cut(s)	202
EcoO109I	RGGNCCY	1 cut(s)	9
EcoT14I	CCWWGG	1 cut(s)	502
ErhI	CCWWGG	1 cut(s)	502
FaeI	CATG	3 cut(s)	495, 607, 726
FaiI	YATR	9 cut(s)	373, 425, 481, 493, 516, 605, 724, 728, 776
FaqI	GGGAC	1 cut(s)	107
FatI	CATG	3 cut(s)	491, 603, 722
FauI	CCCGC	1 cut(s)	183
Fnu4HI	GCNGC	2 cut(s)	179, 261
FokI	GGATG	1 cut(s)	70
Fsp4HI	GCNGC	2 cut(s)	179, 261
FspBI	CTAG	3 cut(s)	588, 671, 711
GlaI	GCGC	2 cut(s)	157, 182
GluI	GCNGC	2 cut(s)	179, 261
GsuI	CTGGAG	1 cut(s)	102
HaeIII	GGCC	4 cut(s)	207, 507, 675, 721
HapII	CCGG	2 cut(s)	508, 660
HgaI	GACGC	1 cut(s)	423
HhaI	GCGC	2 cut(s)	158, 183
Hin1II	CATG	3 cut(s)	495, 607, 726
Hin6I	GCGC	2 cut(s)	156, 181
HinP1I	GCGC	2 cut(s)	156, 181
HpaII	CCGG	2 cut(s)	508, 660
HphI	GGTGA	1 cut(s)	418
Hpy166II	GTNNAC	1 cut(s)	49
Hpy188I	TCNGA	1 cut(s)	527
Hpy188III	TCNNGA	4 cut(s)	12, 56, 544, 636
Hpy8I	GTNNAC	1 cut(s)	49
Hpy99I	CGWCG	2 cut(s)	44, 703
HpyAV	CCTTC	1 cut(s)	403
HpyCH4III	ACNGT	1 cut(s)	146
HpyCH4IV	ACGT	1 cut(s)	297
HpyCH4V	TGCA	5 cut(s)	49, 194, 272, 356, 533
HpyF10VI	GCNNNNNNNGC	4 cut(s)	178, 269, 386, 476
HpyF3I	CTNAG	4 cut(s)	64, 202, 329, 402
HpySE526I	ACGT	1 cut(s)	297
Hsp92II	CATG	3 cut(s)	495, 607, 726
HspAI	GCGC	2 cut(s)	156, 181
Kzo9I	GATC	2 cut(s)	60, 392
LmnI	GCTCC	1 cut(s)	177
Lsp1109I	GCAGC	1 cut(s)	165
LweI	GCATC	1 cut(s)	315
MaeI	CTAG	3 cut(s)	588, 671, 711
MaeII	ACGT	1 cut(s)	297
MalI	GATC	2 cut(s)	62, 394
MboI	GATC	2 cut(s)	60, 392
MboII	GAAGA	4 cut(s)	85, 88, 274, 355
MflI	RGATCY	1 cut(s)	60
MhlI	GDGCHC	2 cut(s)	51, 174
MluCI	AATT	7 cut(s)	112, 133, 195, 528, 564, 570, 751
MnlI	CCTC	9 cut(s)	38, 63, 83, 91, 181, 257, 397, 551, 586
MseI	TTAA	3 cut(s)	462, 558, 781
MspA1I	CMGCKG	2 cut(s)	178, 389
MspI	CCGG	2 cut(s)	508, 660
Mva1269I	GAATGC	1 cut(s)	356
MvnI	CGCG	2 cut(s)	183, 434
MwoI	GCNNNNNNNGC	4 cut(s)	178, 269, 386, 476
NdeII	GATC	2 cut(s)	60, 392
NlaIII	CATG	3 cut(s)	495, 607, 726
NlaIV	GGNNCC	4 cut(s)	11, 658, 664, 720
NmeAIII	GCCGAG	1 cut(s)	246
NspV	TTCGAA	2 cut(s)	138, 302
PceI	AGGCCT	1 cut(s)	207
PcsI	WCGNNNNNNNCGW	1 cut(s)	218
PctI	GAATGC	1 cut(s)	356
PkrI	GCNGC	2 cut(s)	180, 262
PpuMI	RGGWCCY	1 cut(s)	9
Psp1406I	AACGTT	1 cut(s)	297
Psp5II	RGGWCCY	1 cut(s)	9
PspN4I	GGNNCC	4 cut(s)	11, 658, 664, 720
PspPI	GGNCC	3 cut(s)	9, 244, 719
PspPPI	RGGWCCY	1 cut(s)	9
PsuI	RGATCY	1 cut(s)	60
PvuII	CAGCTG	1 cut(s)	389
RsaI	GTAC	2 cut(s)	475, 762
RsaNI	GTAC	2 cut(s)	474, 761
SaqAI	TTAA	3 cut(s)	462, 558, 781
SatI	GCNGC	2 cut(s)	179, 261
Sau3AI	GATC	2 cut(s)	60, 392
Sau96I	GGNCC	3 cut(s)	9, 244, 719
SduI	GDGCHC	2 cut(s)	51, 174
SfaNI	GCATC	1 cut(s)	315
SfcI	CTRYAG	1 cut(s)	486
SfuI	TTCGAA	2 cut(s)	138, 302
SinI	GGWCC	2 cut(s)	9, 244
Sse9I	AATT	7 cut(s)	112, 133, 195, 528, 564, 570, 751
SseBI	AGGCCT	1 cut(s)	207
SsiI	CCGC	3 cut(s)	176, 261, 432
SspMI	CTAG	3 cut(s)	588, 671, 711
StuI	AGGCCT	1 cut(s)	207
StyI	CCWWGG	1 cut(s)	502
TaaI	ACNGT	1 cut(s)	146
TaiI	ACGT	1 cut(s)	300
TaqI	TCGA	6 cut(s)	138, 212, 254, 302, 578, 597
TaqII	GACCGA	1 cut(s)	511
TasI	AATT	7 cut(s)	112, 133, 195, 528, 564, 570, 751
TauI	GCSGC	1 cut(s)	263
Tru1I	TTAA	3 cut(s)	462, 558, 781
Tru9I	TTAA	3 cut(s)	462, 558, 781
TseI	GCWGC	1 cut(s)	178
TspDTI	ATGAA	1 cut(s)	349
VneI	GTGCAC	1 cut(s)	47
VpaK11BI	GGWCC	2 cut(s)	9, 244
XapI	RAATTY	2 cut(s)	133, 751
XcmI	CCANNNNNNNNNTGG	1 cut(s)	40
XspI	CTAG	3 cut(s)	588, 671, 711

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.