Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb7

Orthogroup ID

OG0002256

Physical Location & Seq

Genomic Coordinates Reverse (-)

19592208 .. 19596839

Gene Structure 4632 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_7g25670.t7

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1326 bp

ATGTTCCGAAAAGCAAGGTTTTTTAGTGTGTCACTTGTTGTGTTCTTTGGTCTTTGGCATGCTTCGTCGGCTGGATATTCGCAGTCGCAGTTGAAGGGTGTGGCATCTGCGTCTGTAAGTGAACCAGAGGGTGATGTTGTTAATCAAGCTAGTACTGCACATCCAATTGGTTGGGAGCACCTTGATTGGTTCTACGTCTCTGTTCGAATTGGATTGTTCCTTTGGATTGCTCTACTTAATCTAATTACAATTTCTTCAACTTGGGCTAGAGTAATCGATGTTATGGACAGTGAGTCAGGTTCCAGATTATTTGGATTTATTGGGGCTGGAGCCACACTTGGACAGCTTTGCGGGTCGTTATTTGCAACCGGAATGGCTTTCTTGGGGCCATTTTTGCTACTGTTTTCTGCTTTGTTGATGGAGTTTGCTGCACAGTCATCAAAAGGGATAACACATGATGTACCTCATCTCCATGAGGAACTAACACCCATCAGGACCTGTAAACTGGGTTCTGGAACCTTGTTGCATGCTAAAACTAAGCATACTCTGCAGACAAGACCAAGAATTCTCTCTGCAACAATTTTAAAAGCTGAACCTGATCAGCAGAATGAGCCTGATGGGCAAACCAATCAAAATATCAAAGGAAATTCTCCCAAGTCCTCTACTCCGGTGGTGAAGCCTCAGCTTTGGGCCATCTTAGAAGGATTTCGGCTTATATTGTCATCATCTTACTTGTTGTATGTGTCTTTGTTCCTGTGGCTGAGTGCAGTTGTCTCTTCATTCTTTTATTTTCAGAAAGTGAGTGTCATTGCCATGACTGTAACTAGTTCTCTTGGAAGAAGAAAATTACTTGCCGAGATAAACAGCTTTATTGCTATTTTTATCCTTGCAGGGCAACTTACCATAACGGGGCATTTTCTCACTGTTGTGGGAGTTACTACAGCTATTTGTTCTGCTCCAGTTGTTGCTTTCTCAAATTTGGTTGCAACCGCTATTTGGCCAACTTGGGTAGCCATTGCTATTTCTGAGACCCTGCGGAAGTTCGTGACTTATGTTGTAGCCAGGCCTGGCAGAGAACTCCTATTTACTGTTGTCTCACAGGATGAGAAGTACAAAGCAAAGGTATGTATTGATGTGTTTGTTCAAAGGCTGGGAGATGCTACAGCAGCAGGAATGTACAAGCTACTTTTCAGCACTCTTAATGGGAGAGCATCAACTGTGTCTCTCTACGGCCTGCCTGTCTGTTTGTTGTGGATAGTAATTGCATTTCACTTGGGGCGCCGTCAAGCAGAACTTGCAAGGCTCCAGACTCACTCCACTTTATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

TLC

Protein Analysis

442

Amino Acids

48.25

Weight (kDa)

9.49

Isoelectric Point (pI)

34.11

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002256)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G05310 AT5G05310 AT5G05310 AT5G05310 AT5G05310 AT5G05310 AT5G05310 AT5G05310 AT5G05310
fragaria_vesca	FvH4_7g25670 FvH4_7g25670 FvH4_7g25670 FvH4_7g25670 FvH4_7g25670 FvH4_7g25670 FvH4_7g25670 FvH4_7g25670
malus_domestica	MD01G1164100.v1.1 MD05G1328700.v1.1 MD07G1231800.v1.1 MD07G1231900.v1.1
prunus_persica	Prupe.2G261900_v2.0.a1 Prupe.2G261900_v2.0.a1 Prupe.2G261900_v2.0.a1 Prupe.2G261900_v2.0.a1 Prupe.2G261900_v2.0.a1
pyrus_communis	pycom01g17840 pycom07g20960
rosa_chinensis	RchiOBHm_Chr1g0371881 RchiOBHm_Chr1g0371891
rosa_laevigata	RLG00000026938
rosa_multiflora	Rmu_sc0001755.1_g000047
rosa_roxburghii	Rroxscaffold_4G00285400
rosa_rugosa	Rorug01G0366800 Rorug01G0366900 Rorug01G0366900 Rorug01G0367000 Rorug01G0367100
rosa_samantha	Rh1AG376800 Rh1BG340100 Rh1CG353100 Rh1DG371100
rosa_wichuraiana	Rw1G033150

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	1324
AccB1I	GGYRCC	1 cut(s)	1278
AciI	CCGC	3 cut(s)	351, 990, 1036
AcoI	YGGCCR	1 cut(s)	998
AcsI	RAATTY	3 cut(s)	564, 646, 976
AcyI	GRCGYC	1 cut(s)	1279
AfaI	GTAC	4 cut(s)	154, 462, 1112, 1178
AfiI	CCNNNNNNNGG	2 cut(s)	909, 996
AgsI	TTSAA	3 cut(s)	94, 258, 1145
AhdI	GACNNNNNGTC	1 cut(s)	292
AhlI	ACTAGT	1 cut(s)	824
AjnI	CCWGG	2 cut(s)	1061, 1066
AleI	CACNNNNGTG	1 cut(s)	926
AluBI	AGCT	7 cut(s)	149, 346, 590, 685, 867, 944, 1183
AluI	AGCT	7 cut(s)	149, 346, 590, 685, 867, 944, 1183
Alw21I	GWGCWC	1 cut(s)	180
Alw26I	GTCTC	5 cut(s)	202, 778, 1022, 1099, 1227
AlwNI	CAGNNNCTG	1 cut(s)	498
AoxI	GGCC	5 cut(s)	386, 690, 998, 1064, 1231
ApeKI	GCWGC	2 cut(s)	428, 1166
ApoI	RAATTY	3 cut(s)	564, 646, 976
Asp700I	GAANNNNTTC	1 cut(s)	705
AspLEI	GCGC	1 cut(s)	1281
AspS9I	GGNCC	3 cut(s)	386, 495, 690
AsuHPI	GGTGA	2 cut(s)	143, 685
AsuII	TTCGAA	1 cut(s)	205
AvaII	GGWCC	1 cut(s)	495
BalI	TGGCCA	1 cut(s)	1000
BanI	GGYRCC	1 cut(s)	1278
Bbv12I	GWGCWC	1 cut(s)	180
BbvCI	CCTCAGC	1 cut(s)	681
BbvI	GCAGC	2 cut(s)	415, 1178
BccI	CCATC	4 cut(s)	412, 497, 611, 701
BceAI	ACGGC	2 cut(s)	1246, 1266
BciT130I	CCWGG	2 cut(s)	1063, 1068
BclI	TGATCA	1 cut(s)	598
BcoDI	GTCTC	5 cut(s)	202, 778, 1022, 1099, 1227
BcuI	ACTAGT	1 cut(s)	824
BfaI	CTAG	3 cut(s)	150, 267, 825
BfmI	CTRYAG	3 cut(s)	548, 939, 1161
BfoI	RGCGCY	1 cut(s)	1282
BglI	GCCNNNNNGGC	1 cut(s)	619
BisI	GCNGC	2 cut(s)	429, 1167
BlsI	GCNGC	2 cut(s)	430, 1168
BmcAI	AGTACT	1 cut(s)	154
Bme1390I	CCNGG	2 cut(s)	1063, 1068
Bme18I	GGWCC	1 cut(s)	495
BmeRI	GACNNNNNGTC	1 cut(s)	292
BmgT120I	GGNCC	3 cut(s)	386, 495, 690
BmiI	GGNNCC	6 cut(s)	301, 331, 387, 517, 1280, 1304
BmrFI	CCNGG	2 cut(s)	1063, 1068
BmrI	ACTGGG	1 cut(s)	515
BmsI	GCATC	3 cut(s)	113, 1147, 1220
BmuI	ACTGGG	1 cut(s)	515
BpmI	CTGGAG	3 cut(s)	348, 942, 1289
Bpu10I	CCTNAGC	1 cut(s)	681
Bpu14I	TTCGAA	1 cut(s)	205
Bsa29I	ATCGAT	1 cut(s)	276
BsaHI	GRCGYC	1 cut(s)	1279
BsaI	GGTCTC	1 cut(s)	1022
BsaWI	WCCGGW	2 cut(s)	368, 667
BsaXI	ACNNNNNCTCC	2 cut(s)	453, 483
Bsc4I	CCNNNNNNNGG	2 cut(s)	909, 996
Bse1I	ACTGG	2 cut(s)	510, 959
Bse3DI	GCAATG	2 cut(s)	807, 1014
BseBI	CCWGG	2 cut(s)	1063, 1068
BseCI	ATCGAT	1 cut(s)	276
BseGI	GGATG	2 cut(s)	160, 1108
BseLI	CCNNNNNNNGG	2 cut(s)	909, 996
BseMI	GCAATG	2 cut(s)	807, 1014
BseMII	CTCAG	3 cut(s)	695, 752, 1017
BseNI	ACTGG	2 cut(s)	510, 959
BseXI	GCAGC	2 cut(s)	415, 1178
BseYI	CCCAGC	1 cut(s)	1150
BsgI	GTGCAG	3 cut(s)	141, 414, 786
BshFI	GGCC	5 cut(s)	388, 692, 1000, 1066, 1233
BshNI	GGYRCC	1 cut(s)	1278
BshVI	ATCGAT	1 cut(s)	276
BsiHKAI	GWGCWC	1 cut(s)	180
BsiSI	CCGG	2 cut(s)	369, 668
BslI	CCNNNNNNNGG	2 cut(s)	909, 996
BsmAI	GTCTC	5 cut(s)	202, 778, 1022, 1099, 1227
BsmBI	CGTCTC	1 cut(s)	202
BsnI	GGCC	5 cut(s)	388, 692, 1000, 1066, 1233
Bso31I	GGTCTC	1 cut(s)	1022
Bsp119I	TTCGAA	1 cut(s)	205
Bsp1286I	GDGCHC	1 cut(s)	180
Bsp1407I	TGTACA	1 cut(s)	1176
Bsp143I	GATC	1 cut(s)	598
BspACI	CCGC	3 cut(s)	351, 990, 1036
BspANI	GGCC	5 cut(s)	388, 692, 1000, 1066, 1233
BspCNI	CTCAG	3 cut(s)	694, 753, 1018
BspDI	ATCGAT	1 cut(s)	276
BspLI	GGNNCC	6 cut(s)	301, 331, 387, 517, 1280, 1304
BspMAI	CTGCAG	1 cut(s)	552
BspT104I	TTCGAA	1 cut(s)	205
BspT107I	GGYRCC	1 cut(s)	1278
BspTNI	GGTCTC	1 cut(s)	1022
BsrDI	GCAATG	2 cut(s)	807, 1014
BsrGI	TGTACA	1 cut(s)	1176
BsrI	ACTGG	2 cut(s)	510, 959
BssMI	GATC	1 cut(s)	598
BssNI	GRCGYC	1 cut(s)	1279
Bst2UI	CCWGG	2 cut(s)	1063, 1068
Bst4CI	ACNGT	7 cut(s)	290, 402, 435, 820, 925, 1090, 1219
Bst6I	CTCTTC	1 cut(s)	781
BstACI	GRCGYC	1 cut(s)	1279
BstAPI	GCANNNNNTGC	2 cut(s)	547, 1295
BstAUI	TGTACA	1 cut(s)	1176
BstBI	TTCGAA	1 cut(s)	205
BstC8I	GCNNGC	3 cut(s)	60, 528, 1235
BstDEI	CTNAG	5 cut(s)	537, 681, 697, 761, 1026
BstF5I	GGATG	2 cut(s)	160, 1108
BstH2I	RGCGCY	1 cut(s)	1282
BstHHI	GCGC	1 cut(s)	1281
BstKTI	GATC	1 cut(s)	601
BstMAI	GTCTC	5 cut(s)	202, 778, 1022, 1099, 1227
BstMBI	GATC	1 cut(s)	598
BstMWI	GCNNNNNNNGC	8 cut(s)	68, 155, 394, 547, 610, 619, 1166, 1295
BstNI	CCWGG	2 cut(s)	1063, 1068
BstNSI	RCATGY	2 cut(s)	62, 530
BstSCI	CCNGG	2 cut(s)	1061, 1066
BstSFI	CTRYAG	3 cut(s)	548, 939, 1161
BstV1I	GCAGC	2 cut(s)	415, 1178
BstXI	CCANNNNNNTGG	1 cut(s)	171
Bsu15I	ATCGAT	1 cut(s)	276
BsuRI	GGCC	5 cut(s)	388, 692, 1000, 1066, 1233
BsuTUI	ATCGAT	1 cut(s)	276
BtsCI	GGATG	2 cut(s)	160, 1108
BtsIMutI	CAGTG	2 cut(s)	295, 921
Cac8I	GCNNGC	3 cut(s)	60, 528, 1235
CaiI	CAGNNNCTG	1 cut(s)	498
CfoI	GCGC	1 cut(s)	1281
Cfr13I	GGNCC	3 cut(s)	386, 495, 690
ClaI	ATCGAT	1 cut(s)	276
CseI	GACGC	1 cut(s)	99
Csp6I	GTAC	4 cut(s)	153, 461, 1111, 1177
CviAII	CATG	5 cut(s)	59, 455, 473, 527, 814
CviQI	GTAC	4 cut(s)	153, 461, 1111, 1177
DdeI	CTNAG	5 cut(s)	537, 681, 697, 761, 1026
DinI	GGCGCC	1 cut(s)	1280
DpnI	GATC	1 cut(s)	600
DpnII	GATC	1 cut(s)	598
DraI	TTTAAA	1 cut(s)	585
DriI	GACNNNNNGTC	1 cut(s)	292
EaeI	YGGCCR	1 cut(s)	998
Eam1104I	CTCTTC	1 cut(s)	781
Eam1105I	GACNNNNNGTC	1 cut(s)	292
EarI	CTCTTC	1 cut(s)	781
Eco147I	AGGCCT	1 cut(s)	1066
Eco31I	GGTCTC	1 cut(s)	1022
Eco47I	GGWCC	1 cut(s)	495
EcoO109I	RGGNCCY	1 cut(s)	495
EcoRI	GAATTC	1 cut(s)	564
EcoRII	CCWGG	2 cut(s)	1061, 1066
EgeI	GGCGCC	1 cut(s)	1280
EheI	GGCGCC	1 cut(s)	1280
Esp3I	CGTCTC	1 cut(s)	202
FaeI	CATG	5 cut(s)	62, 458, 476, 530, 817
FalI	AAGNNNNNCTT	2 cut(s)	1278, 1310
FatI	CATG	5 cut(s)	58, 454, 472, 526, 813
FauI	CCCGC	1 cut(s)	344
FbaI	TGATCA	1 cut(s)	598
Fnu4HI	GCNGC	2 cut(s)	429, 1167
FokI	GGATG	2 cut(s)	147, 1115
Fsp4HI	GCNGC	2 cut(s)	429, 1167
FspBI	CTAG	3 cut(s)	150, 267, 825
GlaI	GCGC	1 cut(s)	1280
GluI	GCNGC	2 cut(s)	429, 1167
GsaI	CCCAGC	1 cut(s)	1154
GsuI	CTGGAG	3 cut(s)	348, 942, 1289
HaeII	RGCGCY	1 cut(s)	1282
HaeIII	GGCC	5 cut(s)	388, 692, 1000, 1066, 1233
HapII	CCGG	2 cut(s)	369, 668
HgaI	GACGC	1 cut(s)	99
HhaI	GCGC	1 cut(s)	1281
Hin1I	GRCGYC	1 cut(s)	1279
Hin1II	CATG	5 cut(s)	62, 458, 476, 530, 817
Hin6I	GCGC	1 cut(s)	1279
HinP1I	GCGC	1 cut(s)	1279
HinfI	GANTC	2 cut(s)	293, 1309
HpaII	CCGG	2 cut(s)	369, 668
HphI	GGTGA	2 cut(s)	143, 685
Hpy166II	GTNNAC	2 cut(s)	122, 503
Hpy188I	TCNGA	3 cut(s)	8, 795, 1027
Hpy188III	TCNNGA	5 cut(s)	303, 493, 513, 1045, 1306
Hpy8I	GTNNAC	2 cut(s)	122, 503
Hpy99I	CGWCG	1 cut(s)	70
HpyAV	CCTTC	2 cut(s)	88, 695
HpyCH4III	ACNGT	7 cut(s)	290, 402, 435, 820, 925, 1090, 1219
HpyCH4IV	ACGT	1 cut(s)	195
HpyF10VI	GCNNNNNNNGC	8 cut(s)	68, 155, 394, 547, 610, 619, 1166, 1295
HpyF3I	CTNAG	5 cut(s)	537, 681, 697, 761, 1026
HpySE526I	ACGT	1 cut(s)	195
Hsp92I	GRCGYC	1 cut(s)	1279
Hsp92II	CATG	5 cut(s)	62, 458, 476, 530, 817
HspAI	GCGC	1 cut(s)	1279
KasI	GGCGCC	1 cut(s)	1278
Ksp22I	TGATCA	1 cut(s)	598
Kzo9I	GATC	1 cut(s)	598
LmnI	GCTCC	4 cut(s)	175, 329, 961, 1308
Lsp1109I	GCAGC	2 cut(s)	415, 1178
LweI	GCATC	3 cut(s)	113, 1147, 1220
MaeI	CTAG	3 cut(s)	150, 267, 825
MaeII	ACGT	1 cut(s)	195
MaeIII	GTNAC	4 cut(s)	30, 820, 934, 1045
MalI	GATC	1 cut(s)	600
MboI	GATC	1 cut(s)	598
MboII	GAAGA	4 cut(s)	246, 768, 849, 852
MfeI	CAATTG	1 cut(s)	165
MhlI	GDGCHC	1 cut(s)	180
MlsI	TGGCCA	1 cut(s)	1000
MluNI	TGGCCA	1 cut(s)	1000
Mly113I	GGCGCC	1 cut(s)	1279
MlyI	GAGTC	2 cut(s)	302, 1303
MnlI	CCTC	5 cut(s)	121, 469, 474, 670, 690
Mox20I	TGGCCA	1 cut(s)	1000
MroXI	GAANNNNTTC	1 cut(s)	705
MscI	TGGCCA	1 cut(s)	1000
MseI	TTAA	4 cut(s)	141, 237, 584, 1200
MslI	CAYNNNNRTG	3 cut(s)	471, 812, 926
Msp20I	TGGCCA	1 cut(s)	1000
MspI	CCGG	2 cut(s)	369, 668
MspR9I	CCNGG	2 cut(s)	1063, 1068
MunI	CAATTG	1 cut(s)	165
MvaI	CCWGG	2 cut(s)	1063, 1068
MwoI	GCNNNNNNNGC	8 cut(s)	68, 155, 394, 547, 610, 619, 1166, 1295
NarI	GGCGCC	1 cut(s)	1279
NdeII	GATC	1 cut(s)	598
NlaIII	CATG	5 cut(s)	62, 458, 476, 530, 817
NlaIV	GGNNCC	6 cut(s)	301, 331, 387, 517, 1280, 1304
NmeAIII	GCCGAG	1 cut(s)	880
NmuCI	GTSAC	2 cut(s)	30, 1045
NspI	RCATGY	2 cut(s)	62, 530
NspV	TTCGAA	1 cut(s)	205
OliI	CACNNNNGTG	1 cut(s)	926
PaeI	GCATGC	2 cut(s)	62, 530
PceI	AGGCCT	1 cut(s)	1066
PdmI	GAANNNNTTC	1 cut(s)	705
PkrI	GCNGC	2 cut(s)	430, 1168
PleI	GAGTC	2 cut(s)	301, 1303
PluTI	GGCGCC	1 cut(s)	1282
PpsI	GAGTC	2 cut(s)	301, 1303
PpuMI	RGGWCCY	1 cut(s)	495
PsiI	TTATAA	1 cut(s)	1324
Psp5II	RGGWCCY	1 cut(s)	495
Psp6I	CCWGG	2 cut(s)	1061, 1066
PspFI	CCCAGC	1 cut(s)	1150
PspGI	CCWGG	2 cut(s)	1061, 1066
PspN4I	GGNNCC	6 cut(s)	301, 331, 387, 517, 1280, 1304
PspPI	GGNCC	3 cut(s)	386, 495, 690
PspPPI	RGGWCCY	1 cut(s)	495
PsrI	GAACNNNNNNTAC	2 cut(s)	493, 525
PstI	CTGCAG	1 cut(s)	552
PstNI	CAGNNNCTG	1 cut(s)	498
RsaI	GTAC	4 cut(s)	154, 462, 1112, 1178
RsaNI	GTAC	4 cut(s)	153, 461, 1111, 1177
RseI	CAYNNNNRTG	3 cut(s)	471, 812, 926
SaqAI	TTAA	4 cut(s)	141, 237, 584, 1200
SatI	GCNGC	2 cut(s)	429, 1167
Sau3AI	GATC	1 cut(s)	598
Sau96I	GGNCC	3 cut(s)	386, 495, 690
ScaI	AGTACT	1 cut(s)	154
SchI	GAGTC	2 cut(s)	302, 1303
ScrFI	CCNGG	2 cut(s)	1063, 1068
SduI	GDGCHC	1 cut(s)	180
SfaNI	GCATC	3 cut(s)	113, 1147, 1220
SfcI	CTRYAG	3 cut(s)	548, 939, 1161
SfoI	GGCGCC	1 cut(s)	1280
SfuI	TTCGAA	1 cut(s)	205
SinI	GGWCC	1 cut(s)	495
SmiMI	CAYNNNNRTG	3 cut(s)	471, 812, 926
SpeI	ACTAGT	1 cut(s)	824
SphI	GCATGC	2 cut(s)	62, 530
SseBI	AGGCCT	1 cut(s)	1066
SsiI	CCGC	3 cut(s)	351, 990, 1036
SspDI	GGCGCC	1 cut(s)	1278
SspMI	CTAG	3 cut(s)	150, 267, 825
StuI	AGGCCT	1 cut(s)	1066
StyD4I	CCNGG	2 cut(s)	1061, 1066
TaaI	ACNGT	7 cut(s)	290, 402, 435, 820, 925, 1090, 1219
TaiI	ACGT	1 cut(s)	198
TaqI	TCGA	2 cut(s)	205, 276
TatI	WGTACW	3 cut(s)	152, 1110, 1176
Tru1I	TTAA	4 cut(s)	141, 237, 584, 1200
Tru9I	TTAA	4 cut(s)	141, 237, 584, 1200
TscAI	CASTG	2 cut(s)	295, 928
TseFI	GTSAC	2 cut(s)	30, 1045
TseI	GCWGC	2 cut(s)	428, 1166
Tsp45I	GTSAC	2 cut(s)	30, 1045
TspDTI	ATGAA	1 cut(s)	768
TspRI	CASTG	2 cut(s)	295, 928
VpaK11BI	GGWCC	1 cut(s)	495
XapI	RAATTY	3 cut(s)	564, 646, 976
XceI	RCATGY	2 cut(s)	62, 530
XmnI	GAANNNNTTC	1 cut(s)	705
XspI	CTAG	3 cut(s)	150, 267, 825
ZrmI	AGTACT	1 cut(s)	154

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.