Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0002256

Physical Location & Seq

Genomic Coordinates Reverse (-)

60852719 .. 60855155

Gene Structure 2437 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ59593

Sequence Viewer

CDS Protein Promoter (2k)

Length: 855 bp

ATGAGCAGGTCTCGCGTGGATGCGATTCTGTCCATGTTCGTTACGGTGCACCCTCACGAGACCTCAGCTCTGCTCCACTCCTCGGCTTCCTTCTTTTTCATTTTGTGCGCTTACTTCGTGGTGCTTCCGCTTCGAGATGAAGGTGCAATCTCTCTAGGCCTATCGAACCTTCCGAGCCTATTTATAGGTTCTCTGCTTCTGACTTCCGTTGCTGCACCACTCGCAACTCTCTTTTTCTCTTTGCCGAATGTTCCGAAAGGAAAGGCTTTGGTTTTAATGCACAGGTTTTTTAGTGTGTCACTTGTTGTGTTCTTTGTTCTCTGGCATACTTCATCGGCTGGATATCCGCAGTCACAGTTGAAGGGTACAGCCACATCCACGTCAGTAAATGAACTGAAGGGTAATGTTAATCAAGCTAGTAATGCATATCCCATAGGTTGGGAGCACCTTGATTGGTTCTATGTTTCTGTTCGAATTGGATTGTTTCTGTGGATTGCTCTACTTAATCTAATTACAATTTCTTCAACTTGGGCTAGAGTAATCGATGTTATGGACAGTGAGTCAGGTTCCAGATTATTTGGTTTTATTGGTGCTGGAGCCACACTTGGACAGCTTTGCGGGTCATTGTTTGCCACCGGAATGGCTTTCTTGGGGCCATTTTTACTACTGTTTTCTGCTTTGCTGATGGAGTTTGCGGCACAGTCATCAAAAGGGATAACCCAGGATGTGCCCCATCTCCATGAGGAACTAACACCCATCAGGACGTGTAAACTGGGTTCTGGAACCTTGTTTCATGCTAAAACTAAGCATACTGTGCAGACAAGACCAAGAATTCTCTCTGCTACAATTTTGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

TLC

Protein Analysis

284

Amino Acids

30.88

Weight (kDa)

9.1

Isoelectric Point (pI)

34.35

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002256)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G05310 AT5G05310 AT5G05310 AT5G05310 AT5G05310 AT5G05310 AT5G05310 AT5G05310 AT5G05310
fragaria_vesca	FvH4_7g25670 FvH4_7g25670 FvH4_7g25670 FvH4_7g25670 FvH4_7g25670 FvH4_7g25670 FvH4_7g25670 FvH4_7g25670
malus_domestica	MD01G1164100.v1.1 MD05G1328700.v1.1 MD07G1231800.v1.1 MD07G1231900.v1.1
prunus_persica	Prupe.2G261900_v2.0.a1 Prupe.2G261900_v2.0.a1 Prupe.2G261900_v2.0.a1 Prupe.2G261900_v2.0.a1 Prupe.2G261900_v2.0.a1
pyrus_communis	pycom01g17840 pycom07g20960
rosa_chinensis	RchiOBHm_Chr1g0371881 RchiOBHm_Chr1g0371891
rosa_laevigata	RLG00000026938
rosa_multiflora	Rmu_sc0001755.1_g000047
rosa_roxburghii	Rroxscaffold_4G00285400
rosa_rugosa	Rorug01G0366800 Rorug01G0366900 Rorug01G0366900 Rorug01G0367000 Rorug01G0367100
rosa_samantha	Rh1AG376800 Rh1BG340100 Rh1CG353100 Rh1DG371100
rosa_wichuraiana	Rw1G033150

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	438
AccII	CGCG	1 cut(s)	15
AciI	CCGC	4 cut(s)	128, 347, 618, 695
AcsI	RAATTY	1 cut(s)	831
AcuI	CTGAAG	1 cut(s)	416
AfaI	GTAC	1 cut(s)	367
AfiI	CCNNNNNNNGG	2 cut(s)	82, 438
AflIII	ACRYGT	1 cut(s)	764
AgsI	TTSAA	2 cut(s)	361, 525
AhdI	GACNNNNNGTC	1 cut(s)	559
AjiI	CACGTC	2 cut(s)	381, 765
AjnI	CCWGG	1 cut(s)	720
AluBI	AGCT	3 cut(s)	68, 416, 613
AluI	AGCT	3 cut(s)	68, 416, 613
Alw21I	GWGCWC	2 cut(s)	51, 447
Alw26I	GTCTC	2 cut(s)	15, 53
Alw44I	GTGCAC	1 cut(s)	47
AoxI	GGCC	2 cut(s)	157, 653
ApaLI	GTGCAC	1 cut(s)	47
ApeKI	GCWGC	1 cut(s)	212
ApoI	RAATTY	1 cut(s)	831
AspLEI	GCGC	1 cut(s)	110
AspS9I	GGNCC	1 cut(s)	653
AsuII	TTCGAA	1 cut(s)	472
BaeGI	GKGCMC	2 cut(s)	51, 732
BauI	CACGAG	1 cut(s)	56
Bbv12I	GWGCWC	2 cut(s)	51, 447
BbvCI	CCTCAGC	1 cut(s)	64
BbvI	GCAGC	1 cut(s)	199
BccI	CCATC	3 cut(s)	679, 741, 764
BciT130I	CCWGG	1 cut(s)	722
BcoDI	GTCTC	2 cut(s)	15, 53
BfaI	CTAG	3 cut(s)	155, 417, 534
BisI	GCNGC	2 cut(s)	213, 696
BlsI	GCNGC	2 cut(s)	214, 697
Bme1390I	CCNGG	1 cut(s)	722
BmeRI	GACNNNNNGTC	1 cut(s)	559
BmgBI	CACGTC	2 cut(s)	381, 765
BmgT120I	GGNCC	1 cut(s)	653
BmiI	GGNNCC	4 cut(s)	568, 598, 654, 784
BmrFI	CCNGG	1 cut(s)	722
BmrI	ACTGGG	1 cut(s)	782
BmsI	GCATC	1 cut(s)	10
BmuI	ACTGGG	1 cut(s)	782
BplI	GAGNNNNNCTC	1 cut(s)	27
BpmI	CTGGAG	1 cut(s)	615
Bpu10I	CCTNAGC	1 cut(s)	64
Bpu14I	TTCGAA	1 cut(s)	472
Bsa29I	ATCGAT	1 cut(s)	543
BsaI	GGTCTC	2 cut(s)	15, 53
BsaJI	CCNNGG	2 cut(s)	81, 720
BsaWI	WCCGGW	1 cut(s)	635
Bsc4I	CCNNNNNNNGG	2 cut(s)	82, 438
Bse1I	ACTGG	1 cut(s)	777
BseBI	CCWGG	1 cut(s)	722
BseCI	ATCGAT	1 cut(s)	543
BseDI	CCNNGG	2 cut(s)	81, 720
BseGI	GGATG	3 cut(s)	25, 374, 730
BseLI	CCNNNNNNNGG	2 cut(s)	82, 438
BseMII	CTCAG	1 cut(s)	78
BseNI	ACTGG	1 cut(s)	777
BseRI	GAGGAG	1 cut(s)	70
BseSI	GKGCMC	2 cut(s)	51, 732
BseXI	GCAGC	1 cut(s)	199
BsgI	GTGCAG	2 cut(s)	198, 836
Bsh1236I	CGCG	1 cut(s)	15
BshFI	GGCC	2 cut(s)	159, 655
BshVI	ATCGAT	1 cut(s)	543
BsiHKAI	GWGCWC	2 cut(s)	51, 447
BsiSI	CCGG	1 cut(s)	636
BslI	CCNNNNNNNGG	2 cut(s)	82, 438
BsmAI	GTCTC	2 cut(s)	15, 53
BsnI	GGCC	2 cut(s)	159, 655
Bso31I	GGTCTC	2 cut(s)	15, 53
Bsp119I	TTCGAA	1 cut(s)	472
Bsp1286I	GDGCHC	3 cut(s)	51, 447, 732
BspACI	CCGC	4 cut(s)	128, 347, 618, 695
BspANI	GGCC	2 cut(s)	159, 655
BspCNI	CTCAG	1 cut(s)	77
BspDI	ATCGAT	1 cut(s)	543
BspFNI	CGCG	1 cut(s)	15
BspLI	GGNNCC	4 cut(s)	568, 598, 654, 784
BspT104I	TTCGAA	1 cut(s)	472
BspTNI	GGTCTC	2 cut(s)	15, 53
BsrI	ACTGG	1 cut(s)	777
BssECI	CCNNGG	2 cut(s)	81, 720
BssSI	CACGAG	1 cut(s)	56
Bst2BI	CACGAG	1 cut(s)	56
Bst2UI	CCWGG	1 cut(s)	722
Bst4CI	ACNGT	6 cut(s)	46, 357, 557, 669, 702, 814
BstAPI	GCANNNNNTGC	1 cut(s)	814
BstBI	TTCGAA	1 cut(s)	472
BstDEI	CTNAG	2 cut(s)	64, 804
BstF5I	GGATG	3 cut(s)	25, 374, 730
BstFNI	CGCG	1 cut(s)	15
BstHHI	GCGC	1 cut(s)	110
BstMAI	GTCTC	2 cut(s)	15, 53
BstMWI	GCNNNNNNNGC	4 cut(s)	12, 221, 422, 814
BstNI	CCWGG	1 cut(s)	722
BstSCI	CCNGG	1 cut(s)	720
BstSLI	GKGCMC	2 cut(s)	51, 732
BstUI	CGCG	1 cut(s)	15
BstV1I	GCAGC	1 cut(s)	199
BstXI	CCANNNNNNTGG	1 cut(s)	640
Bsu15I	ATCGAT	1 cut(s)	543
BsuRI	GGCC	2 cut(s)	159, 655
BsuTUI	ATCGAT	1 cut(s)	543
BtrI	CACGTC	2 cut(s)	381, 765
BtsCI	GGATG	3 cut(s)	25, 374, 730
BtsIMutI	CAGTG	1 cut(s)	562
CfoI	GCGC	1 cut(s)	110
Cfr13I	GGNCC	1 cut(s)	653
ClaI	ATCGAT	1 cut(s)	543
Csp6I	GTAC	1 cut(s)	366
CviAII	CATG	3 cut(s)	34, 740, 794
CviQI	GTAC	1 cut(s)	366
DdeI	CTNAG	2 cut(s)	64, 804
DriI	GACNNNNNGTC	1 cut(s)	559
Eam1105I	GACNNNNNGTC	1 cut(s)	559
Eco147I	AGGCCT	1 cut(s)	159
Eco31I	GGTCTC	2 cut(s)	15, 53
Eco32I	GATATC	1 cut(s)	344
Eco57I	CTGAAG	1 cut(s)	416
EcoRI	GAATTC	1 cut(s)	831
EcoRII	CCWGG	1 cut(s)	720
EcoRV	GATATC	1 cut(s)	344
EcoT22I	ATGCAT	1 cut(s)	427
FaeI	CATG	3 cut(s)	37, 743, 797
FatI	CATG	3 cut(s)	33, 739, 793
FauI	CCCGC	1 cut(s)	611
Fnu4HI	GCNGC	2 cut(s)	213, 696
FokI	GGATG	3 cut(s)	32, 361, 737
Fsp4HI	GCNGC	2 cut(s)	213, 696
FspBI	CTAG	3 cut(s)	155, 417, 534
GlaI	GCGC	1 cut(s)	109
GluI	GCNGC	2 cut(s)	213, 696
GsuI	CTGGAG	1 cut(s)	615
HaeIII	GGCC	2 cut(s)	159, 655
HapII	CCGG	1 cut(s)	636
HhaI	GCGC	1 cut(s)	110
Hin1II	CATG	3 cut(s)	37, 743, 797
Hin6I	GCGC	1 cut(s)	108
HinP1I	GCGC	1 cut(s)	108
HinfI	GANTC	2 cut(s)	25, 560
HpaII	CCGG	1 cut(s)	636
Hpy166II	GTNNAC	2 cut(s)	49, 770
Hpy188I	TCNGA	3 cut(s)	174, 201, 255
Hpy188III	TCNNGA	5 cut(s)	56, 134, 570, 760, 780
Hpy8I	GTNNAC	2 cut(s)	49, 770
HpyAV	CCTTC	5 cut(s)	100, 134, 179, 355, 391
HpyCH4III	ACNGT	6 cut(s)	46, 357, 557, 669, 702, 814
HpyCH4IV	ACGT	2 cut(s)	380, 764
HpyCH4V	TGCA	6 cut(s)	49, 146, 215, 280, 425, 817
HpyF10VI	GCNNNNNNNGC	4 cut(s)	12, 221, 422, 814
HpyF3I	CTNAG	2 cut(s)	64, 804
HpySE526I	ACGT	2 cut(s)	380, 764
Hsp92II	CATG	3 cut(s)	37, 743, 797
HspAI	GCGC	1 cut(s)	108
LmnI	GCTCC	3 cut(s)	78, 442, 596
Lsp1109I	GCAGC	1 cut(s)	199
LweI	GCATC	1 cut(s)	10
MaeI	CTAG	3 cut(s)	155, 417, 534
MaeII	ACGT	2 cut(s)	380, 764
MaeIII	GTNAC	3 cut(s)	40, 297, 351
MboII	GAAGA	1 cut(s)	513
MhlI	GDGCHC	3 cut(s)	51, 447, 732
MluCI	AATT	5 cut(s)	474, 510, 516, 831, 846
MlyI	GAGTC	1 cut(s)	569
MnlI	CCTC	4 cut(s)	63, 73, 91, 736
Mph1103I	ATGCAT	1 cut(s)	427
MseI	TTAA	3 cut(s)	275, 408, 504
MslI	CAYNNNNRTG	2 cut(s)	638, 738
MspI	CCGG	1 cut(s)	636
MspR9I	CCNGG	1 cut(s)	722
MvaI	CCWGG	1 cut(s)	722
MvnI	CGCG	1 cut(s)	15
MwoI	GCNNNNNNNGC	4 cut(s)	12, 221, 422, 814
NlaIII	CATG	3 cut(s)	37, 743, 797
NlaIV	GGNNCC	4 cut(s)	568, 598, 654, 784
NmeAIII	GCCGAG	1 cut(s)	62
NmuCI	GTSAC	2 cut(s)	297, 351
NsiI	ATGCAT	1 cut(s)	427
NspV	TTCGAA	1 cut(s)	472
PceI	AGGCCT	1 cut(s)	159
PcsI	WCGNNNNNNNCGW	1 cut(s)	170
PfeI	GAWTC	1 cut(s)	25
PflMI	CCANNNNNTGG	1 cut(s)	438
PkrI	GCNGC	2 cut(s)	214, 697
PleI	GAGTC	1 cut(s)	568
PpsI	GAGTC	1 cut(s)	568
Psp6I	CCWGG	1 cut(s)	720
PspGI	CCWGG	1 cut(s)	720
PspN4I	GGNNCC	4 cut(s)	568, 598, 654, 784
PspPI	GGNCC	1 cut(s)	653
PsrI	GAACNNNNNNTAC	2 cut(s)	760, 792
RsaI	GTAC	1 cut(s)	367
RsaNI	GTAC	1 cut(s)	366
RseI	CAYNNNNRTG	2 cut(s)	638, 738
SaqAI	TTAA	3 cut(s)	275, 408, 504
SatI	GCNGC	2 cut(s)	213, 696
Sau96I	GGNCC	1 cut(s)	653
SchI	GAGTC	1 cut(s)	569
ScrFI	CCNGG	1 cut(s)	722
SduI	GDGCHC	3 cut(s)	51, 447, 732
SfaNI	GCATC	1 cut(s)	10
SfuI	TTCGAA	1 cut(s)	472
SmiMI	CAYNNNNRTG	2 cut(s)	638, 738
Sse9I	AATT	5 cut(s)	474, 510, 516, 831, 846
SseBI	AGGCCT	1 cut(s)	159
SsiI	CCGC	4 cut(s)	128, 347, 618, 695
SspMI	CTAG	3 cut(s)	155, 417, 534
StuI	AGGCCT	1 cut(s)	159
StyD4I	CCNGG	1 cut(s)	720
TaaI	ACNGT	6 cut(s)	46, 357, 557, 669, 702, 814
TaiI	ACGT	2 cut(s)	383, 767
TaqI	TCGA	4 cut(s)	133, 164, 472, 543
TasI	AATT	5 cut(s)	474, 510, 516, 831, 846
TauI	GCSGC	1 cut(s)	698
TfiI	GAWTC	1 cut(s)	25
Tru1I	TTAA	3 cut(s)	275, 408, 504
Tru9I	TTAA	3 cut(s)	275, 408, 504
TscAI	CASTG	1 cut(s)	562
TseFI	GTSAC	2 cut(s)	297, 351
TseI	GCWGC	1 cut(s)	212
Tsp45I	GTSAC	2 cut(s)	297, 351
TspDTI	ATGAA	5 cut(s)	88, 153, 321, 405, 782
TspGWI	ACGGA	1 cut(s)	196
TspRI	CASTG	1 cut(s)	562
Van91I	CCANNNNNTGG	1 cut(s)	438
VneI	GTGCAC	1 cut(s)	47
XapI	RAATTY	1 cut(s)	831
XspI	CTAG	3 cut(s)	155, 417, 534
Zsp2I	ATGCAT	1 cut(s)	427

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.