RchiOBHm_Chr1g0371881

ADP,ATP carrier protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
1
OG0002256
Physical Location & Seq
Reverse (-)
60850468 .. 60852717
2250 bp
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UTR
Exon/CDS
Intron
PRQ59592

Sequence Viewer

Length: 513 bp
ATGACTGTTACTAGTTCTCTTGGAAGAAGAAAATTGCTTGCCCAGATAAACAGCTTTATTGCTATTTTTATCCTCGCCGGACAACTTACCATAACGGGGCATTTTCTCACTGTTGTGGGAGTTACTACAGCTATTTGTTCTGCTCCAGTTGTTGCCTTCTTGAATTTGGTTGCAACTGCTATTTGGCCAACTTGGGTAGCCATTGCTATTTCTGAGACCCTGCGGAAGTTTGTTACATATGTTGTAGCCAGGCCTGGCAGAGAACTCCTATTTACTGTTGTCTCACAGGATGAAAAGTACAAAGCAAAGGTTTGCATTGATGTGTTTGTTCAAAGACTCGGAGATGCTACAGCAGCAGGAATGTACAAGCTACTTTTCAGCACTCTTAATGGGAGAGCATCAACTGTGTCTCTCTACGGCCTGCCTGTCTGTTTGCTGTGGATAGTGATTGCATTTCATTTAGGACGCCGTCAAGCAGAACTTGCAAGGGTCCGGACACACTCCACTTCTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
TLC

Protein Analysis

170

Amino Acids

18.57

Weight (kDa)

10.18

Isoelectric Point (pI)

26.15

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
TLC PF03219 12 - 156 3.9e-06 TLC ATP/ADP transporter
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccIII TCCGGA 1 cut(s) 492
AciI CCGC 1 cut(s) 223
AcoI YGGCCR 1 cut(s) 185
AcsI RAATTY 1 cut(s) 163
AcyI GRCGYC 1 cut(s) 466
AfaI GTAC 2 cut(s) 299, 365
AfiI CCNNNNNNNGG 1 cut(s) 96
AgsI TTSAA 2 cut(s) 163, 332
AhlI ACTAGT 1 cut(s) 11
AjnI CCWGG 2 cut(s) 248, 253
AleI CACNNNNGTG 1 cut(s) 113
AluBI AGCT 3 cut(s) 54, 131, 370
AluI AGCT 3 cut(s) 54, 131, 370
Alw26I GTCTC 3 cut(s) 209, 286, 414
Aor13HI TCCGGA 1 cut(s) 492
AoxI GGCC 3 cut(s) 185, 251, 418
ApeKI GCWGC 1 cut(s) 353
ApoI RAATTY 1 cut(s) 163
AspS9I GGNCC 1 cut(s) 490
AvaII GGWCC 1 cut(s) 490
BalI TGGCCA 1 cut(s) 187
BbvI GCAGC 1 cut(s) 365
BceAI ACGGC 2 cut(s) 433, 453
BciT130I CCWGG 2 cut(s) 250, 255
BcoDI GTCTC 3 cut(s) 209, 286, 414
BcuI ACTAGT 1 cut(s) 11
BfaI CTAG 1 cut(s) 12
BfmI CTRYAG 2 cut(s) 126, 348
BisI GCNGC 1 cut(s) 354
BlsI GCNGC 1 cut(s) 355
Bme1390I CCNGG 2 cut(s) 250, 255
Bme18I GGWCC 1 cut(s) 490
BmgT120I GGNCC 1 cut(s) 490
BmiI GGNNCC 1 cut(s) 491
BmrFI CCNGG 2 cut(s) 250, 255
BmsI GCATC 2 cut(s) 334, 407
BpmI CTGGAG 1 cut(s) 129
BsaHI GRCGYC 1 cut(s) 466
BsaI GGTCTC 1 cut(s) 209
BsaWI WCCGGW 1 cut(s) 492
Bsc4I CCNNNNNNNGG 1 cut(s) 96
Bse1I ACTGG 1 cut(s) 146
Bse3DI GCAATG 1 cut(s) 201
BseAI TCCGGA 1 cut(s) 492
BseBI CCWGG 2 cut(s) 250, 255
BseGI GGATG 1 cut(s) 295
BseLI CCNNNNNNNGG 1 cut(s) 96
BseMI GCAATG 1 cut(s) 201
BseMII CTCAG 1 cut(s) 204
BseNI ACTGG 1 cut(s) 146
BseXI GCAGC 1 cut(s) 365
BshFI GGCC 3 cut(s) 187, 253, 420
BsiSI CCGG 2 cut(s) 78, 493
BslI CCNNNNNNNGG 1 cut(s) 96
BsmAI GTCTC 3 cut(s) 209, 286, 414
BsnI GGCC 3 cut(s) 187, 253, 420
Bso31I GGTCTC 1 cut(s) 209
Bsp13I TCCGGA 1 cut(s) 492
Bsp1407I TGTACA 1 cut(s) 363
BspACI CCGC 1 cut(s) 223
BspANI GGCC 3 cut(s) 187, 253, 420
BspCNI CTCAG 1 cut(s) 205
BspEI TCCGGA 1 cut(s) 492
BspLI GGNNCC 1 cut(s) 491
BspTNI GGTCTC 1 cut(s) 209
BsrDI GCAATG 1 cut(s) 201
BsrGI TGTACA 1 cut(s) 363
BsrI ACTGG 1 cut(s) 146
BssNI GRCGYC 1 cut(s) 466
Bst2UI CCWGG 2 cut(s) 250, 255
Bst4CI ACNGT 4 cut(s) 7, 112, 277, 406
BstACI GRCGYC 1 cut(s) 466
BstAPI GCANNNNNTGC 1 cut(s) 482
BstAUI TGTACA 1 cut(s) 363
BstC8I GCNNGC 2 cut(s) 39, 422
BstDEI CTNAG 1 cut(s) 213
BstF5I GGATG 1 cut(s) 295
BstMAI GTCTC 3 cut(s) 209, 286, 414
BstMWI GCNNNNNNNGC 2 cut(s) 353, 482
BstNI CCWGG 2 cut(s) 250, 255
BstSCI CCNGG 2 cut(s) 248, 253
BstSFI CTRYAG 2 cut(s) 126, 348
BstV1I GCAGC 1 cut(s) 365
BsuRI GGCC 3 cut(s) 187, 253, 420
BtsCI GGATG 1 cut(s) 295
BtsIMutI CAGTG 1 cut(s) 108
Cac8I GCNNGC 2 cut(s) 39, 422
Cfr13I GGNCC 1 cut(s) 490
CseI GACGC 1 cut(s) 474
Csp6I GTAC 2 cut(s) 298, 364
CviJI RGCY 8 cut(s) 54, 131, 187, 200, 248, 253, 370, 420
CviKI_1 RGCY 8 cut(s) 54, 131, 187, 200, 248, 253, 370, 420
CviQI GTAC 2 cut(s) 298, 364
DdeI CTNAG 1 cut(s) 213
EaeI YGGCCR 1 cut(s) 185
Eco147I AGGCCT 1 cut(s) 253
Eco31I GGTCTC 1 cut(s) 209
Eco47I GGWCC 1 cut(s) 490
EcoRII CCWGG 2 cut(s) 248, 253
FaiI YATR 3 cut(s) 92, 238, 240
FalI AAGNNNNNCTT 2 cut(s) 465, 497
FauNDI CATATG 1 cut(s) 238
Fnu4HI GCNGC 1 cut(s) 354
FokI GGATG 1 cut(s) 302
Fsp4HI GCNGC 1 cut(s) 354
FspBI CTAG 1 cut(s) 12
GluI GCNGC 1 cut(s) 354
GsuI CTGGAG 1 cut(s) 129
HaeIII GGCC 3 cut(s) 187, 253, 420
HapII CCGG 2 cut(s) 78, 493
HgaI GACGC 1 cut(s) 474
Hin1I GRCGYC 1 cut(s) 466
HinfI GANTC 1 cut(s) 336
HpaII CCGG 2 cut(s) 78, 493
Hpy188I TCNGA 2 cut(s) 214, 341
Hpy188III TCNNGA 2 cut(s) 160, 493
HpyAV CCTTC 1 cut(s) 166
HpyCH4III ACNGT 4 cut(s) 7, 112, 277, 406
HpyCH4V TGCA 4 cut(s) 173, 315, 452, 485
HpyF10VI GCNNNNNNNGC 2 cut(s) 353, 482
HpyF3I CTNAG 1 cut(s) 213
Hsp92I GRCGYC 1 cut(s) 466
Kpn2I TCCGGA 1 cut(s) 492
LmnI GCTCC 1 cut(s) 148
Lsp1109I GCAGC 1 cut(s) 365
LweI GCATC 2 cut(s) 334, 407
MaeI CTAG 1 cut(s) 12
MaeIII GTNAC 3 cut(s) 7, 121, 232
MboII GAAGA 2 cut(s) 36, 39
MlsI TGGCCA 1 cut(s) 187
MluCI AATT 2 cut(s) 32, 163
MluNI TGGCCA 1 cut(s) 187
MlyI GAGTC 1 cut(s) 330
MnlI CCTC 1 cut(s) 83
Mox20I TGGCCA 1 cut(s) 187
MroI TCCGGA 1 cut(s) 492
MscI TGGCCA 1 cut(s) 187
MseI TTAA 2 cut(s) 387, 511
MslI CAYNNNNRTG 2 cut(s) 113, 320
Msp20I TGGCCA 1 cut(s) 187
MspI CCGG 2 cut(s) 78, 493
MspR9I CCNGG 2 cut(s) 250, 255
MvaI CCWGG 2 cut(s) 250, 255
MwoI GCNNNNNNNGC 2 cut(s) 353, 482
NdeI CATATG 1 cut(s) 238
NlaIV GGNNCC 1 cut(s) 491
OliI CACNNNNGTG 1 cut(s) 113
PceI AGGCCT 1 cut(s) 253
PflFI GACNNNGTC 1 cut(s) 468
PkrI GCNGC 1 cut(s) 355
PleI GAGTC 1 cut(s) 330
PpsI GAGTC 1 cut(s) 330
Psp6I CCWGG 2 cut(s) 248, 253
PspGI CCWGG 2 cut(s) 248, 253
PspN4I GGNNCC 1 cut(s) 491
PspPI GGNCC 1 cut(s) 490
PsyI GACNNNGTC 1 cut(s) 468
RsaI GTAC 2 cut(s) 299, 365
RsaNI GTAC 2 cut(s) 298, 364
RseI CAYNNNNRTG 2 cut(s) 113, 320
SaqAI TTAA 2 cut(s) 387, 511
SatI GCNGC 1 cut(s) 354
Sau96I GGNCC 1 cut(s) 490
SchI GAGTC 1 cut(s) 330
ScrFI CCNGG 2 cut(s) 250, 255
SetI ASST 4 cut(s) 56, 133, 312, 372
SfaNI GCATC 2 cut(s) 334, 407
SfcI CTRYAG 2 cut(s) 126, 348
SinI GGWCC 1 cut(s) 490
SmiMI CAYNNNNRTG 2 cut(s) 113, 320
SpeI ACTAGT 1 cut(s) 11
Sse9I AATT 2 cut(s) 32, 163
SseBI AGGCCT 1 cut(s) 253
SsiI CCGC 1 cut(s) 223
SspMI CTAG 1 cut(s) 12
StuI AGGCCT 1 cut(s) 253
StyD4I CCNGG 2 cut(s) 248, 253
TaaI ACNGT 4 cut(s) 7, 112, 277, 406
TasI AATT 2 cut(s) 32, 163
TatI WGTACW 2 cut(s) 297, 363
Tru1I TTAA 2 cut(s) 387, 511
Tru9I TTAA 2 cut(s) 387, 511
TscAI CASTG 1 cut(s) 115
TseI GCWGC 1 cut(s) 353
TspDTI ATGAA 2 cut(s) 306, 446
TspRI CASTG 1 cut(s) 115
Tth111I GACNNNGTC 1 cut(s) 468
VpaK11BI GGWCC 1 cut(s) 490
XapI RAATTY 1 cut(s) 163
XspI CTAG 1 cut(s) 12
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.