Rorug01G0366900

ADP,ATP carrier protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000001
OG0002256
Physical Location & Seq
Forward (+)
48253838 .. 48256464
2627 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug01G0366900.1

Sequence Viewer

Length: 1602 bp
ATGGCTGGACTAGAAGGTCATGTAATCGGAATTGATCTCGGCACAAAGTACTCATGTGTGGGAGTTTGGAAGCATGATAACAATAATGTTGATATCATAGTCAACGATCAGGGCAACAGGACCACTCCGTCATGTGTTGCCTTCACTGATACTGAGCTTCTGGTAGGAGAAGCAGCGTTTAATCAGGTCATCAGAAACCCCGAAAACTCCATCTTTGATGCAAAGCGGTTAATTGGCAAGAAATTCAGTGATGCGTCTGTTCAAAGTGACAAGAAGCTCTGGCCATTCAAGGTGGTTGAAGGTCCTGATGATAAGCCTATTATTTTGGCTAAGCACGAAGGCAAAAAGAAACAGTGTGCTGCTGAAGAGATCTCATCCATGGTTCTTGCGAAAATGCGGGAGATTGCTGAAGCCTATCTTGGTTCAACTGTGAAGAATGCAGTGATCACGGTCCCTGCTTACTTTAATAATTCACAGCGTGAGGCTACAAAAAAAGCTGGTATTACTGCAGGCCTAAATGTGATGCGTATTATCAATGAACCAACTGCAGCAGCCATTGCTTATGGCCTTGACAAGAAGGCTGGTTGGTATAGCAAGAGAAACGTACTCATATTTGATTTGGGTGGGGGTACTTTGGATGTGTCACTACTTACCATAGGTGATGGTGTCTTTGAAGTGAAAGCCACTGCTGGAGATACTCATCTTGGAGGTGAGGACTTCGATACCAAAATGGTGAATTACTGTGTTCAGGAATTTAAGAGGAAGCACAATTTGGATGTTAGTGGAAACATCAGAACTCTTAGGAGGTTAAGAAATGCATGTGAAATGGCAAAGAGGAGACTTTCATTTACAGCTACAACTGACATTGAAATTGAATGTTTGCATCAAGGTATTGATTTCTGTGTGACTTTTACTCGTGCCAAATTTGAACAGCTCAACCTTGATTTCTTTAATAAGTGTATGGAGCCTGTGGAGAAGTGTTTGGAGGATGCCAAAATGGACGTAGGTAGTGTCCATGATGTCGTTCTTGCTGGTGGCTCTTCTAGAATCCCCATGGTGCAACAACTGCTACAGAATGTGTTCAAGGGGAAGGAGCTGTGCAAGAGCATAAATCCTGATGAGGCAATAGCATATGGTGCAGCTGTTCAAGCTGCAGTCTTGACAGGTGGGAACTTGCATGGGAAACTTCAAGACTTCACTCTCTTGGATGTCACCCCTCTCTCACTTGGAGTGGAGTGTACTGATACTACTGACCCTCTCAACTTCAAACAATACATGAATGTCCTGATTCCAAGAAACTCTCGCATTCCCATCAAGGAGAAAACGATCTTGGTAACTATTTATGACAACCAACGGTCAATATCCTTCCCTGTTTATGAGGGTGAGAGTAGAATAGTCAAACAAAATAACTTTTTAGGTCAGTTTTCACTTCATGGCATTCCTCCAGCTCCTAAAGGTAAAGCCAGGTTTGATGTTTGCTTTGATATTGATGCAAATGGTATCCTGAGTGTCTCTGCTGAGGACATGTCCACAGGCCAAAAGAAAGGGATTACAATCAATAGTGATAGAAGAACTTTTGAAGGTATTGAGAATGCGAGGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
TLC

Protein Analysis

533

Amino Acids

58.64

Weight (kDa)

6.77

Isoelectric Point (pI)

37.59

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
HSP70 PF00012 8 - 524 2.3e-201 Hsp70 protein
MreB_Mbl PF06723 142 - 381 2.3e-16 MreB/Mbl protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 2 cut(s) 15, 127
AciI CCGC 2 cut(s) 226, 397
AcoI YGGCCR 1 cut(s) 281
AcsI RAATTY 3 cut(s) 242, 752, 923
AcuI CTGAAG 2 cut(s) 384, 429
AdeI CACNNNGTG 1 cut(s) 479
AfaI GTAC 4 cut(s) 50, 606, 631, 1240
AflIII ACRYGT 1 cut(s) 1524
AjnI CCWGG 1 cut(s) 1463
AjuI GAANNNNNNNTTGG 6 cut(s) 402, 434, 755, 787, 1313, 1345
AluBI AGCT 9 cut(s) 157, 277, 497, 854, 934, 1096, 1142, 1151, 1448
AluI AGCT 9 cut(s) 157, 277, 497, 854, 934, 1096, 1142, 1151, 1448
Alw26I GTCTC 2 cut(s) 832, 1516
AoxI GGCC 4 cut(s) 281, 511, 565, 1534
ApeKI GCWGC 6 cut(s) 173, 359, 548, 551, 1139, 1151
ApoI RAATTY 3 cut(s) 242, 752, 923
Asp700I GAANNNNTTC 1 cut(s) 1079
AspS9I GGNCC 3 cut(s) 120, 302, 451
AsuHPI GGTGA 5 cut(s) 671, 722, 745, 1204, 1394
AvaII GGWCC 3 cut(s) 120, 302, 451
BalI TGGCCA 1 cut(s) 283
BauI CACGAG 1 cut(s) 915
BbvCI CCTCAGC 1 cut(s) 1518
BbvI GCAGC 6 cut(s) 185, 346, 560, 563, 1138, 1151
BccI CCATC 3 cut(s) 218, 656, 1319
BciT130I CCWGG 1 cut(s) 1465
BciVI GTATCC 1 cut(s) 1511
BclI TGATCA 1 cut(s) 444
BcoDI GTCTC 2 cut(s) 832, 1516
BfaI CTAG 2 cut(s) 11, 1044
BfmI CTRYAG 4 cut(s) 507, 546, 1070, 1152
BfuI GTATCC 1 cut(s) 1511
BglII AGATCT 1 cut(s) 369
BisI GCNGC 6 cut(s) 174, 360, 549, 552, 1140, 1152
BlpI GCTNAGC 1 cut(s) 330
BlsI GCNGC 6 cut(s) 175, 361, 550, 553, 1141, 1153
BmcAI AGTACT 1 cut(s) 50
Bme1390I CCNGG 1 cut(s) 1465
Bme18I GGWCC 3 cut(s) 120, 302, 451
BmgT120I GGNCC 3 cut(s) 120, 302, 451
BmiI GGNNCC 2 cut(s) 453, 966
BmrFI CCNGG 1 cut(s) 1465
BmsI GCATC 6 cut(s) 208, 241, 513, 892, 979, 1480
BpmI CTGGAG 2 cut(s) 711, 1428
Bpu10I CCTNAGC 1 cut(s) 1518
Bpu1102I GCTNAGC 1 cut(s) 330
BsaBI GATNNNNATC 2 cut(s) 699, 1553
BsaJI CCNNGG 2 cut(s) 378, 1053
Bse3DI GCAATG 1 cut(s) 555
Bse8I GATNNNNATC 2 cut(s) 699, 1553
BseBI CCWGG 1 cut(s) 1465
BseDI CCNNGG 2 cut(s) 378, 1053
BseGI GGATG 5 cut(s) 374, 643, 781, 994, 1213
BseJI GATNNNNATC 2 cut(s) 699, 1553
BseMI GCAATG 1 cut(s) 555
BseMII CTCAG 3 cut(s) 144, 1496, 1509
BseRI GAGGAG 1 cut(s) 850
BseXI GCAGC 6 cut(s) 185, 346, 560, 563, 1138, 1151
BsgI GTGCAG 1 cut(s) 1158
BshFI GGCC 4 cut(s) 283, 513, 567, 1536
BslFI GGGAC 1 cut(s) 437
BsmAI GTCTC 2 cut(s) 832, 1516
BsmFI GGGAC 1 cut(s) 437
BsmI GAATGC 4 cut(s) 442, 1305, 1437, 1597
BsnI GGCC 4 cut(s) 283, 513, 567, 1536
Bsp143I GATC 5 cut(s) 34, 106, 369, 444, 1326
Bsp1720I GCTNAGC 1 cut(s) 330
Bsp19I CCATGG 2 cut(s) 378, 1053
BspACI CCGC 2 cut(s) 226, 397
BspANI GGCC 4 cut(s) 283, 513, 567, 1536
BspCNI CTCAG 3 cut(s) 145, 1497, 1510
BspLI GGNNCC 2 cut(s) 453, 966
BspMAI CTGCAG 3 cut(s) 511, 550, 1156
BspQI GCTCTTC 1 cut(s) 1045
BsrDI GCAATG 1 cut(s) 555
BssECI CCNNGG 2 cut(s) 378, 1053
BssMI GATC 5 cut(s) 34, 106, 369, 444, 1326
BssSI CACGAG 1 cut(s) 915
BssT1I CCWWGG 2 cut(s) 378, 1053
Bst2BI CACGAG 1 cut(s) 915
Bst2UI CCWGG 1 cut(s) 1465
Bst4CI ACNGT 5 cut(s) 354, 430, 451, 743, 1356
Bst6I CTCTTC 2 cut(s) 360, 1045
BstAPI GCANNNNNTGC 3 cut(s) 557, 1066, 1136
BstC8I GCNNGC 1 cut(s) 511
BstDEI CTNAG 5 cut(s) 153, 330, 800, 1505, 1518
BstDSI CCRYGG 2 cut(s) 378, 1053
BstF5I GGATG 5 cut(s) 374, 643, 781, 994, 1213
BstKTI GATC 5 cut(s) 37, 109, 372, 447, 1329
BstMAI GTCTC 2 cut(s) 832, 1516
BstMBI GATC 5 cut(s) 34, 106, 369, 444, 1326
BstMWI GCNNNNNNNGC 4 cut(s) 557, 1066, 1136, 1148
BstNI CCWGG 1 cut(s) 1465
BstNSI RCATGY 2 cut(s) 822, 1528
BstSCI CCNGG 1 cut(s) 1463
BstSFI CTRYAG 4 cut(s) 507, 546, 1070, 1152
BstV1I GCAGC 6 cut(s) 185, 346, 560, 563, 1138, 1151
BstX2I RGATCY 1 cut(s) 369
BstYI RGATCY 1 cut(s) 369
BsuI GTATCC 1 cut(s) 1511
BsuRI GGCC 4 cut(s) 283, 513, 567, 1536
BtgI CCRYGG 2 cut(s) 378, 1053
BtsCI GGATG 5 cut(s) 374, 643, 781, 994, 1213
BtsI GCAGTG 2 cut(s) 447, 684
BtsIMutI CAGTG 5 cut(s) 144, 253, 359, 447, 684
Cac8I GCNNGC 1 cut(s) 511
Cfr13I GGNCC 3 cut(s) 120, 302, 451
CseI GACGC 1 cut(s) 243
Csp6I GTAC 4 cut(s) 49, 605, 630, 1239
CviQI GTAC 4 cut(s) 49, 605, 630, 1239
DdeI CTNAG 5 cut(s) 153, 330, 800, 1505, 1518
DpnI GATC 5 cut(s) 36, 108, 371, 446, 1328
DpnII GATC 5 cut(s) 34, 106, 369, 444, 1326
DraIII CACNNNGTG 1 cut(s) 479
DrdI GACNNNNNNGTC 2 cut(s) 15, 127
DseDI GACNNNNNNGTC 2 cut(s) 15, 127
EaeI YGGCCR 1 cut(s) 281
Eam1104I CTCTTC 2 cut(s) 360, 1045
EarI CTCTTC 2 cut(s) 360, 1045
Eco130I CCWWGG 2 cut(s) 378, 1053
Eco147I AGGCCT 1 cut(s) 513
Eco32I GATATC 1 cut(s) 94
Eco47I GGWCC 3 cut(s) 120, 302, 451
Eco57I CTGAAG 2 cut(s) 384, 429
EcoO109I RGGNCCY 1 cut(s) 302
EcoRII CCWGG 1 cut(s) 1463
EcoRV GATATC 1 cut(s) 94
EcoT14I CCWWGG 2 cut(s) 378, 1053
EcoT22I ATGCAT 1 cut(s) 820
ErhI CCWWGG 2 cut(s) 378, 1053
FalI AAGNNNNNCTT 2 cut(s) 402, 434
FaqI GGGAC 1 cut(s) 437
FauI CCCGC 1 cut(s) 390
FauNDI CATATG 1 cut(s) 1132
FbaI TGATCA 1 cut(s) 444
Fnu4HI GCNGC 6 cut(s) 174, 360, 549, 552, 1140, 1152
FokI GGATG 5 cut(s) 361, 650, 788, 1001, 1220
Fsp4HI GCNGC 6 cut(s) 174, 360, 549, 552, 1140, 1152
FspBI CTAG 2 cut(s) 11, 1044
GluI GCNGC 6 cut(s) 174, 360, 549, 552, 1140, 1152
GsuI CTGGAG 2 cut(s) 711, 1428
HaeIII GGCC 4 cut(s) 283, 513, 567, 1536
HgaI GACGC 1 cut(s) 243
HincII GTYRAC 1 cut(s) 103
HindII GTYRAC 1 cut(s) 103
HinfI GANTC 2 cut(s) 1047, 1288
HphI GGTGA 5 cut(s) 671, 722, 745, 1204, 1394
Hpy166II GTNNAC 3 cut(s) 103, 1239, 1530
Hpy188I TCNGA 3 cut(s) 29, 194, 794
Hpy188III TCNNGA 8 cut(s) 305, 749, 1044, 1115, 1159, 1190, 1285, 1504
Hpy8I GTNNAC 3 cut(s) 103, 1239, 1530
HpyAV CCTTC 8 cut(s) 8, 151, 293, 332, 571, 1084, 1375, 1574
HpyCH4III ACNGT 5 cut(s) 354, 430, 451, 743, 1356
HpyCH4IV ACGT 2 cut(s) 603, 1002
HpyF10VI GCNNNNNNNGC 4 cut(s) 557, 1066, 1136, 1148
HpyF3I CTNAG 5 cut(s) 153, 330, 800, 1505, 1518
HpySE526I ACGT 2 cut(s) 603, 1002
Ksp22I TGATCA 1 cut(s) 444
Kzo9I GATC 5 cut(s) 34, 106, 369, 444, 1326
LguI GCTCTTC 1 cut(s) 1045
LmnI GCTCC 3 cut(s) 964, 1093, 1453
Lsp1109I GCAGC 6 cut(s) 185, 346, 560, 563, 1138, 1151
LweI GCATC 6 cut(s) 208, 241, 513, 892, 979, 1480
MaeI CTAG 2 cut(s) 11, 1044
MaeII ACGT 2 cut(s) 603, 1002
MaeIII GTNAC 5 cut(s) 266, 642, 904, 1210, 1333
MalI GATC 5 cut(s) 36, 108, 371, 446, 1328
MboI GATC 5 cut(s) 34, 106, 369, 444, 1326
MboII GAAGA 4 cut(s) 377, 445, 1032, 1581
MflI RGATCY 1 cut(s) 369
MlsI TGGCCA 1 cut(s) 283
MluCI AATT 9 cut(s) 30, 231, 242, 469, 736, 752, 769, 870, 923
MluNI TGGCCA 1 cut(s) 283
Mox20I TGGCCA 1 cut(s) 283
Mph1103I ATGCAT 1 cut(s) 820
MroXI GAANNNNTTC 1 cut(s) 1079
MscI TGGCCA 1 cut(s) 283
MseI TTAA 6 cut(s) 180, 230, 465, 756, 809, 951
Msp20I TGGCCA 1 cut(s) 283
MspA1I CMGCKG 1 cut(s) 1142
MspR9I CCNGG 1 cut(s) 1465
Mva1269I GAATGC 4 cut(s) 442, 1305, 1437, 1597
MvaI CCWGG 1 cut(s) 1465
MwoI GCNNNNNNNGC 4 cut(s) 557, 1066, 1136, 1148
NcoI CCATGG 2 cut(s) 378, 1053
NdeI CATATG 1 cut(s) 1132
NdeII GATC 5 cut(s) 34, 106, 369, 444, 1326
NlaIV GGNNCC 2 cut(s) 453, 966
NmeAIII GCCGAG 1 cut(s) 18
NmuCI GTSAC 4 cut(s) 266, 642, 904, 1210
NsiI ATGCAT 1 cut(s) 820
NspI RCATGY 2 cut(s) 822, 1528
PceI AGGCCT 1 cut(s) 513
PciI ACATGT 1 cut(s) 1524
PciSI GCTCTTC 1 cut(s) 1045
PctI GAATGC 4 cut(s) 442, 1305, 1437, 1597
PdmI GAANNNNTTC 1 cut(s) 1079
PfeI GAWTC 2 cut(s) 1047, 1288
PkrI GCNGC 6 cut(s) 175, 361, 550, 553, 1141, 1153
PpuMI RGGWCCY 1 cut(s) 302
PscI ACATGT 1 cut(s) 1524
Psp5II RGGWCCY 1 cut(s) 302
Psp6I CCWGG 1 cut(s) 1463
PspGI CCWGG 1 cut(s) 1463
PspN4I GGNNCC 2 cut(s) 453, 966
PspPI GGNCC 3 cut(s) 120, 302, 451
PspPPI RGGWCCY 1 cut(s) 302
PstI CTGCAG 3 cut(s) 511, 550, 1156
PsuI RGATCY 1 cut(s) 369
PvuII CAGCTG 1 cut(s) 1142
RsaI GTAC 4 cut(s) 50, 606, 631, 1240
RsaNI GTAC 4 cut(s) 49, 605, 630, 1239
SapI GCTCTTC 1 cut(s) 1045
SaqAI TTAA 6 cut(s) 180, 230, 465, 756, 809, 951
SatI GCNGC 6 cut(s) 174, 360, 549, 552, 1140, 1152
Sau3AI GATC 5 cut(s) 34, 106, 369, 444, 1326
Sau96I GGNCC 3 cut(s) 120, 302, 451
ScaI AGTACT 1 cut(s) 50
ScrFI CCNGG 1 cut(s) 1465
SfaNI GCATC 6 cut(s) 208, 241, 513, 892, 979, 1480
SfcI CTRYAG 4 cut(s) 507, 546, 1070, 1152
SinI GGWCC 3 cut(s) 120, 302, 451
Sse9I AATT 9 cut(s) 30, 231, 242, 469, 736, 752, 769, 870, 923
SseBI AGGCCT 1 cut(s) 513
SsiI CCGC 2 cut(s) 226, 397
SspMI CTAG 2 cut(s) 11, 1044
StuI AGGCCT 1 cut(s) 513
StyD4I CCNGG 1 cut(s) 1463
StyI CCWWGG 2 cut(s) 378, 1053
TaaI ACNGT 5 cut(s) 354, 430, 451, 743, 1356
TaiI ACGT 2 cut(s) 606, 1005
TaqI TCGA 1 cut(s) 720
TasI AATT 9 cut(s) 30, 231, 242, 469, 736, 752, 769, 870, 923
TatI WGTACW 2 cut(s) 48, 1238
TfiI GAWTC 2 cut(s) 1047, 1288
Tru1I TTAA 6 cut(s) 180, 230, 465, 756, 809, 951
Tru9I TTAA 6 cut(s) 180, 230, 465, 756, 809, 951
TscAI CASTG 5 cut(s) 151, 253, 359, 447, 691
TseFI GTSAC 4 cut(s) 266, 642, 904, 1210
TseI GCWGC 6 cut(s) 173, 359, 548, 551, 1139, 1151
Tsp45I GTSAC 4 cut(s) 266, 642, 904, 1210
TspDTI ATGAA 4 cut(s) 552, 834, 1292, 1421
TspGWI ACGGA 1 cut(s) 117
TspRI CASTG 5 cut(s) 151, 253, 359, 447, 691
VpaK11BI GGWCC 3 cut(s) 120, 302, 451
XapI RAATTY 3 cut(s) 242, 752, 923
XbaI TCTAGA 1 cut(s) 1043
XceI RCATGY 2 cut(s) 822, 1528
XmnI GAANNNNTTC 1 cut(s) 1079
XspI CTAG 2 cut(s) 11, 1044
ZrmI AGTACT 1 cut(s) 50
Zsp2I ATGCAT 1 cut(s) 820
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.