Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000001

Orthogroup ID

OG0002256

Physical Location & Seq

Genomic Coordinates Forward (+)

48272051 .. 48273918

Gene Structure 1868 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug01G0367100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1602 bp

ATGGCTGGAATAGAAGGTCATGCAATTGGAATTGATCTCGGCACAAAGTACTCATGTGTGGGAGTTTGGAAGCATGATAACAATAATGTTGATATCATAGTGAACGATCAGGGCAACAGGACCACGCCGTCATGTGTTGCCTTCACTGGTACTGAGCTTCTGGTAGGAGAAGCAGCGTTTAATCAGGTCGTGAGAAACCCCGAAAACTCCATATTTGATGCAAAGCGGTTAATTGGCAGGAAATTCAGTGATGCGTCTGTTCAAAGTGACAAGAAGCTCTGGCCATTCAAGGTGGTTGAAGGTCCTGATGATAAGCCTATTATTTTGGTTACGCCCAAAGGCAAAGAGAAACAGTGTGCTGCTGAAGAGGTCTCATCCATGGGTCTTGCAAAAATGCGGGAGATTGCTGAAGCCTATCTTGGTTCAACAGTGAAGAATGCAGTGATAACGGTCCCTGCTTACTTTAATAATTCACAGCGTGAGGCTACAAAAAGAGCTGGTATTACTGCAGGCCTAAATGTGATGCGTATCATCAATGAACCGACTGCAGCAGCCATTGCTTATGGCCTTGACAAGAAGGCTGGTTGGTATAGCAAGAGAAACGTACTCATATTTGATTTGGGTGGGGGTACTTTGGATGTGTCACTACTTACCATAGGTGATGGTGTCTTTGAAGTGAAAGCCACTGCTGGAGATACTCATCTTGGAGGTGAGGACTTCGATACCAAAATGGTGAATTACTGTGTTGAGGAATTTAAGAGGAAGCACAATTTGGATGTCAGTGGAAACATCAGAACTCTTAGGAGGTTAAGAAATGCATGTGAAATGTCAAAGAGGAGACTTTCATTTACAACTACAACTGACATTGAAATTGAATGTTTGCATCAAGGTATTGATTTCTGTGTGACTTTTACTCGTGCCAAATTTGAACAGCTCAACCTTGATTTCTTTAATAAGTGTATGGAGCCTGTGGAGAAGTGTTTGGAGGATGCCAAAATGGACGTAGGTAGTGTCCTTGATGTCGTTCTTGCTGGTGGCTCTTCTAGAATTCCCAAGGTGCAACAACTGCTACAGAATGTGTTCAAGGGGAAGGAGCTGTGCAAGAGCATAAATCCTGATGAGGCGATAGCATATGGTGCCGCAGTTCAAGCTGCAGTCTTGACAGGTGGGAACTTCTGTGGGAAACTTCAAGACTTCACTCTCTTGGATGTCACGCCTCTCTCACTTGGAGTGAAGTGTACTGATACTACTGACCCTCACAACTTCAAGTATTACATGAATGTGGTGATTCCAAGAAACTCTCGCAATCCCATCAAGAAGAAAACGATCTTACGAAATGCTGTTGACAACCAACGTTCAGCTCCCTTCCTTGTTTATGAGGGTGAGAGTAGAATAGCCGAACAAAATAACTTTCTAGGTTGTTTTTCACTTGATGACATTCCTCCTGTTCCTAAAGGTCAAGCCAAATTTGATGTTTGCTTTGATATTGATGCAAATGGTATCTTGAGTGTCTCTGCTGAGGACATGTCCACAGGCCAAAAGAAGGGGATTACAATCAACAGTGATAGAAGAACTTTTGAAGGCATTGAGAATGCGAGGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

TLC

Protein Analysis

533

Amino Acids

58.5

Weight (kDa)

6.63

Isoelectric Point (pI)

39.58

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
HSP70	PF00012	8 - 524	4.2e-194	Hsp70 protein
MreB_Mbl	PF06723	144 - 381	9.4e-16	MreB/Mbl protein

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002256)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G05310 AT5G05310 AT5G05310 AT5G05310 AT5G05310 AT5G05310 AT5G05310 AT5G05310 AT5G05310
fragaria_vesca	FvH4_7g25670 FvH4_7g25670 FvH4_7g25670 FvH4_7g25670 FvH4_7g25670 FvH4_7g25670 FvH4_7g25670 FvH4_7g25670
malus_domestica	MD01G1164100.v1.1 MD05G1328700.v1.1 MD07G1231800.v1.1 MD07G1231900.v1.1
prunus_persica	Prupe.2G261900_v2.0.a1 Prupe.2G261900_v2.0.a1 Prupe.2G261900_v2.0.a1 Prupe.2G261900_v2.0.a1 Prupe.2G261900_v2.0.a1
pyrus_communis	pycom01g17840 pycom07g20960
rosa_chinensis	RchiOBHm_Chr1g0371881 RchiOBHm_Chr1g0371891
rosa_laevigata	RLG00000026938
rosa_multiflora	Rmu_sc0001755.1_g000047
rosa_roxburghii	Rroxscaffold_4G00285400
rosa_rugosa	Rorug01G0366800 Rorug01G0366900 Rorug01G0366900 Rorug01G0367000 Rorug01G0367100
rosa_samantha	Rh1AG376800 Rh1BG340100 Rh1CG353100 Rh1DG371100
rosa_wichuraiana	Rw1G033150

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	127
AccB1I	GGYRCC	1 cut(s)	1136
AciI	CCGC	3 cut(s)	226, 397, 1140
AclI	AACGTT	1 cut(s)	1354
AcoI	YGGCCR	1 cut(s)	281
AcsI	RAATTY	5 cut(s)	242, 752, 923, 1047, 1466
AcuI	CTGAAG	2 cut(s)	384, 429
AdeI	CACNNNGTG	1 cut(s)	479
AfaI	GTAC	5 cut(s)	50, 151, 606, 631, 1240
AfiI	CCNNNNNNNGG	1 cut(s)	1543
AflIII	ACRYGT	1 cut(s)	1524
AjuI	GAANNNNNNNTTGG	4 cut(s)	402, 434, 755, 787
AluBI	AGCT	7 cut(s)	157, 277, 497, 934, 1096, 1151, 1361
AluI	AGCT	7 cut(s)	157, 277, 497, 934, 1096, 1151, 1361
Alw26I	GTCTC	3 cut(s)	376, 832, 1516
AoxI	GGCC	4 cut(s)	281, 511, 565, 1534
ApeKI	GCWGC	5 cut(s)	173, 359, 548, 551, 1151
ApoI	RAATTY	5 cut(s)	242, 752, 923, 1047, 1466
Asp700I	GAANNNNTTC	1 cut(s)	1079
AspS9I	GGNCC	3 cut(s)	120, 302, 451
AsuHPI	GGTGA	5 cut(s)	671, 722, 745, 1297, 1394
AvaII	GGWCC	3 cut(s)	120, 302, 451
BalI	TGGCCA	1 cut(s)	283
BanI	GGYRCC	1 cut(s)	1136
BauI	CACGAG	1 cut(s)	915
BbvCI	CCTCAGC	1 cut(s)	1518
BbvI	GCAGC	5 cut(s)	185, 346, 560, 563, 1138
BccI	CCATC	2 cut(s)	656, 1319
BceAI	ACGGC	1 cut(s)	112
BcoDI	GTCTC	3 cut(s)	376, 832, 1516
BfaI	CTAG	2 cut(s)	1044, 1415
BfmI	CTRYAG	4 cut(s)	507, 546, 1070, 1152
BisI	GCNGC	6 cut(s)	174, 360, 549, 552, 1140, 1152
BlsI	GCNGC	6 cut(s)	175, 361, 550, 553, 1141, 1153
BmcAI	AGTACT	1 cut(s)	50
Bme18I	GGWCC	3 cut(s)	120, 302, 451
BmgT120I	GGNCC	3 cut(s)	120, 302, 451
BmiI	GGNNCC	3 cut(s)	453, 966, 1138
BmsI	GCATC	6 cut(s)	208, 241, 513, 892, 979, 1480
BpmI	CTGGAG	1 cut(s)	711
Bpu10I	CCTNAGC	1 cut(s)	1518
BpuEI	CTTGAG	1 cut(s)	1525
BsaBI	GATNNNNATC	3 cut(s)	527, 699, 1553
BsaI	GGTCTC	1 cut(s)	376
BsaJI	CCNNGG	2 cut(s)	378, 1053
Bsc4I	CCNNNNNNNGG	1 cut(s)	1543
Bse1I	ACTGG	1 cut(s)	151
Bse3DI	GCAATG	1 cut(s)	555
Bse8I	GATNNNNATC	3 cut(s)	527, 699, 1553
BseDI	CCNNGG	2 cut(s)	378, 1053
BseGI	GGATG	5 cut(s)	374, 643, 781, 994, 1213
BseJI	GATNNNNATC	3 cut(s)	527, 699, 1553
BseLI	CCNNNNNNNGG	1 cut(s)	1543
BseMI	GCAATG	1 cut(s)	555
BseMII	CTCAG	2 cut(s)	144, 1509
BseNI	ACTGG	1 cut(s)	151
BseRI	GAGGAG	1 cut(s)	850
BseXI	GCAGC	5 cut(s)	185, 346, 560, 563, 1138
BshFI	GGCC	4 cut(s)	283, 513, 567, 1536
BshNI	GGYRCC	1 cut(s)	1136
BslFI	GGGAC	1 cut(s)	437
BslI	CCNNNNNNNGG	1 cut(s)	1543
BsmAI	GTCTC	3 cut(s)	376, 832, 1516
BsmFI	GGGAC	1 cut(s)	437
BsmI	GAATGC	2 cut(s)	442, 1597
BsnI	GGCC	4 cut(s)	283, 513, 567, 1536
Bso31I	GGTCTC	1 cut(s)	376
Bsp143I	GATC	3 cut(s)	34, 106, 1326
Bsp19I	CCATGG	1 cut(s)	378
BspACI	CCGC	3 cut(s)	226, 397, 1140
BspANI	GGCC	4 cut(s)	283, 513, 567, 1536
BspCNI	CTCAG	2 cut(s)	145, 1510
BspLI	GGNNCC	3 cut(s)	453, 966, 1138
BspMAI	CTGCAG	3 cut(s)	511, 550, 1156
BspQI	GCTCTTC	1 cut(s)	1045
BspT107I	GGYRCC	1 cut(s)	1136
BspTNI	GGTCTC	1 cut(s)	376
BsrDI	GCAATG	1 cut(s)	555
BsrI	ACTGG	1 cut(s)	151
BssECI	CCNNGG	2 cut(s)	378, 1053
BssMI	GATC	3 cut(s)	34, 106, 1326
BssSI	CACGAG	1 cut(s)	915
BssT1I	CCWWGG	2 cut(s)	378, 1053
Bst2BI	CACGAG	1 cut(s)	915
Bst4CI	ACNGT	5 cut(s)	354, 430, 451, 743, 1562
Bst6I	CTCTTC	2 cut(s)	360, 1045
BstAPI	GCANNNNNTGC	3 cut(s)	557, 1066, 1136
BstC8I	GCNNGC	1 cut(s)	511
BstDEI	CTNAG	3 cut(s)	153, 800, 1518
BstDSI	CCRYGG	1 cut(s)	378
BstF5I	GGATG	5 cut(s)	374, 643, 781, 994, 1213
BstKTI	GATC	3 cut(s)	37, 109, 1329
BstMAI	GTCTC	3 cut(s)	376, 832, 1516
BstMBI	GATC	3 cut(s)	34, 106, 1326
BstMWI	GCNNNNNNNGC	4 cut(s)	557, 1066, 1136, 1148
BstNSI	RCATGY	2 cut(s)	822, 1528
BstSFI	CTRYAG	4 cut(s)	507, 546, 1070, 1152
BstV1I	GCAGC	5 cut(s)	185, 346, 560, 563, 1138
BsuRI	GGCC	4 cut(s)	283, 513, 567, 1536
BtgI	CCRYGG	1 cut(s)	378
BtsCI	GGATG	5 cut(s)	374, 643, 781, 994, 1213
BtsI	GCAGTG	2 cut(s)	447, 684
BtsIMutI	CAGTG	8 cut(s)	144, 253, 359, 435, 447, 684, 787, 1567
Cac8I	GCNNGC	1 cut(s)	511
Cfr13I	GGNCC	3 cut(s)	120, 302, 451
CseI	GACGC	1 cut(s)	243
Csp6I	GTAC	5 cut(s)	49, 150, 605, 630, 1239
CviAII	CATG	8 cut(s)	20, 54, 74, 132, 379, 819, 1276, 1525
CviQI	GTAC	5 cut(s)	49, 150, 605, 630, 1239
DdeI	CTNAG	3 cut(s)	153, 800, 1518
DpnI	GATC	3 cut(s)	36, 108, 1328
DpnII	GATC	3 cut(s)	34, 106, 1326
DraIII	CACNNNGTG	1 cut(s)	479
DrdI	GACNNNNNNGTC	1 cut(s)	127
DseDI	GACNNNNNNGTC	1 cut(s)	127
EaeI	YGGCCR	1 cut(s)	281
Eam1104I	CTCTTC	2 cut(s)	360, 1045
EarI	CTCTTC	2 cut(s)	360, 1045
Eco130I	CCWWGG	2 cut(s)	378, 1053
Eco147I	AGGCCT	1 cut(s)	513
Eco31I	GGTCTC	1 cut(s)	376
Eco32I	GATATC	1 cut(s)	94
Eco47I	GGWCC	3 cut(s)	120, 302, 451
Eco57I	CTGAAG	2 cut(s)	384, 429
EcoO109I	RGGNCCY	1 cut(s)	302
EcoRI	GAATTC	1 cut(s)	1047
EcoRV	GATATC	1 cut(s)	94
EcoT14I	CCWWGG	2 cut(s)	378, 1053
EcoT22I	ATGCAT	1 cut(s)	820
ErhI	CCWWGG	2 cut(s)	378, 1053
FaeI	CATG	8 cut(s)	23, 57, 77, 135, 382, 822, 1279, 1528
FalI	AAGNNNNNCTT	2 cut(s)	402, 434
FaqI	GGGAC	1 cut(s)	437
FatI	CATG	8 cut(s)	19, 53, 73, 131, 378, 818, 1275, 1524
FauI	CCCGC	1 cut(s)	390
FauNDI	CATATG	1 cut(s)	1132
Fnu4HI	GCNGC	6 cut(s)	174, 360, 549, 552, 1140, 1152
FokI	GGATG	5 cut(s)	361, 650, 788, 1001, 1220
Fsp4HI	GCNGC	6 cut(s)	174, 360, 549, 552, 1140, 1152
FspBI	CTAG	2 cut(s)	1044, 1415
GluI	GCNGC	6 cut(s)	174, 360, 549, 552, 1140, 1152
GsuI	CTGGAG	1 cut(s)	711
HaeIII	GGCC	4 cut(s)	283, 513, 567, 1536
HgaI	GACGC	1 cut(s)	243
Hin1II	CATG	8 cut(s)	23, 57, 77, 135, 382, 822, 1279, 1528
HincII	GTYRAC	1 cut(s)	1345
HindII	GTYRAC	1 cut(s)	1345
HinfI	GANTC	1 cut(s)	1288
HphI	GGTGA	5 cut(s)	671, 722, 745, 1297, 1394
Hpy166II	GTNNAC	4 cut(s)	103, 1239, 1345, 1530
Hpy188I	TCNGA	1 cut(s)	794
Hpy188III	TCNNGA	8 cut(s)	190, 305, 1044, 1115, 1159, 1190, 1315, 1504
Hpy8I	GTNNAC	4 cut(s)	103, 1239, 1345, 1530
HpyAV	CCTTC	8 cut(s)	8, 151, 293, 571, 1084, 1375, 1537, 1574
HpyCH4III	ACNGT	5 cut(s)	354, 430, 451, 743, 1562
HpyCH4IV	ACGT	3 cut(s)	603, 1002, 1354
HpyF10VI	GCNNNNNNNGC	4 cut(s)	557, 1066, 1136, 1148
HpyF3I	CTNAG	3 cut(s)	153, 800, 1518
HpySE526I	ACGT	3 cut(s)	603, 1002, 1354
Hsp92II	CATG	8 cut(s)	23, 57, 77, 135, 382, 822, 1279, 1528
Kzo9I	GATC	3 cut(s)	34, 106, 1326
LguI	GCTCTTC	1 cut(s)	1045
LmnI	GCTCC	3 cut(s)	964, 1093, 1366
Lsp1109I	GCAGC	5 cut(s)	185, 346, 560, 563, 1138
LweI	GCATC	6 cut(s)	208, 241, 513, 892, 979, 1480
MaeI	CTAG	2 cut(s)	1044, 1415
MaeII	ACGT	3 cut(s)	603, 1002, 1354
MaeIII	GTNAC	5 cut(s)	266, 328, 642, 904, 1210
MalI	GATC	3 cut(s)	36, 108, 1328
MboI	GATC	3 cut(s)	34, 106, 1326
MboII	GAAGA	5 cut(s)	377, 445, 1032, 1330, 1581
MfeI	CAATTG	1 cut(s)	24
MlsI	TGGCCA	1 cut(s)	283
MluNI	TGGCCA	1 cut(s)	283
Mox20I	TGGCCA	1 cut(s)	283
Mph1103I	ATGCAT	1 cut(s)	820
MroXI	GAANNNNTTC	1 cut(s)	1079
MscI	TGGCCA	1 cut(s)	283
MseI	TTAA	6 cut(s)	180, 230, 465, 756, 809, 951
MslI	CAYNNNNRTG	1 cut(s)	1280
Msp20I	TGGCCA	1 cut(s)	283
MunI	CAATTG	1 cut(s)	24
Mva1269I	GAATGC	2 cut(s)	442, 1597
MwoI	GCNNNNNNNGC	4 cut(s)	557, 1066, 1136, 1148
NcoI	CCATGG	1 cut(s)	378
NdeI	CATATG	1 cut(s)	1132
NdeII	GATC	3 cut(s)	34, 106, 1326
NlaIII	CATG	8 cut(s)	23, 57, 77, 135, 382, 822, 1279, 1528
NlaIV	GGNNCC	3 cut(s)	453, 966, 1138
NmeAIII	GCCGAG	1 cut(s)	18
NmuCI	GTSAC	4 cut(s)	266, 642, 904, 1210
NsiI	ATGCAT	1 cut(s)	820
NspI	RCATGY	2 cut(s)	822, 1528
PceI	AGGCCT	1 cut(s)	513
PciI	ACATGT	1 cut(s)	1524
PciSI	GCTCTTC	1 cut(s)	1045
PctI	GAATGC	2 cut(s)	442, 1597
PdmI	GAANNNNTTC	1 cut(s)	1079
PfeI	GAWTC	1 cut(s)	1288
PkrI	GCNGC	6 cut(s)	175, 361, 550, 553, 1141, 1153
PpuMI	RGGWCCY	1 cut(s)	302
PscI	ACATGT	1 cut(s)	1524
Psp1406I	AACGTT	1 cut(s)	1354
Psp5II	RGGWCCY	1 cut(s)	302
PspN4I	GGNNCC	3 cut(s)	453, 966, 1138
PspPI	GGNCC	3 cut(s)	120, 302, 451
PspPPI	RGGWCCY	1 cut(s)	302
PstI	CTGCAG	3 cut(s)	511, 550, 1156
RsaI	GTAC	5 cut(s)	50, 151, 606, 631, 1240
RsaNI	GTAC	5 cut(s)	49, 150, 605, 630, 1239
RseI	CAYNNNNRTG	1 cut(s)	1280
SapI	GCTCTTC	1 cut(s)	1045
SaqAI	TTAA	6 cut(s)	180, 230, 465, 756, 809, 951
SatI	GCNGC	6 cut(s)	174, 360, 549, 552, 1140, 1152
Sau3AI	GATC	3 cut(s)	34, 106, 1326
Sau96I	GGNCC	3 cut(s)	120, 302, 451
ScaI	AGTACT	1 cut(s)	50
SfaNI	GCATC	6 cut(s)	208, 241, 513, 892, 979, 1480
SfcI	CTRYAG	4 cut(s)	507, 546, 1070, 1152
SinI	GGWCC	3 cut(s)	120, 302, 451
SmiMI	CAYNNNNRTG	1 cut(s)	1280
SmlI	CTYRAG	1 cut(s)	1504
SmoI	CTYRAG	1 cut(s)	1504
SseBI	AGGCCT	1 cut(s)	513
SsiI	CCGC	3 cut(s)	226, 397, 1140
SspMI	CTAG	2 cut(s)	1044, 1415
StuI	AGGCCT	1 cut(s)	513
StyI	CCWWGG	2 cut(s)	378, 1053
TaaI	ACNGT	5 cut(s)	354, 430, 451, 743, 1562
TaiI	ACGT	3 cut(s)	606, 1005, 1357
TaqI	TCGA	1 cut(s)	720
TatI	WGTACW	2 cut(s)	48, 1238
TauI	GCSGC	1 cut(s)	1142
TfiI	GAWTC	1 cut(s)	1288
Tru1I	TTAA	6 cut(s)	180, 230, 465, 756, 809, 951
Tru9I	TTAA	6 cut(s)	180, 230, 465, 756, 809, 951
TscAI	CASTG	8 cut(s)	151, 253, 359, 435, 447, 691, 787, 1567
TseFI	GTSAC	4 cut(s)	266, 642, 904, 1210
TseI	GCWGC	5 cut(s)	173, 359, 548, 551, 1151
Tsp45I	GTSAC	4 cut(s)	266, 642, 904, 1210
TspDTI	ATGAA	3 cut(s)	552, 834, 1292
TspRI	CASTG	8 cut(s)	151, 253, 359, 435, 447, 691, 787, 1567
VpaK11BI	GGWCC	3 cut(s)	120, 302, 451
XapI	RAATTY	5 cut(s)	242, 752, 923, 1047, 1466
XbaI	TCTAGA	1 cut(s)	1043
XceI	RCATGY	2 cut(s)	822, 1528
XmnI	GAANNNNTTC	1 cut(s)	1079
XspI	CTAG	2 cut(s)	1044, 1415
ZrmI	AGTACT	1 cut(s)	50
Zsp2I	ATGCAT	1 cut(s)	820

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.