Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr1C

Orthogroup ID

OG0002256

Physical Location & Seq

Genomic Coordinates Reverse (-)

62886926 .. 62891558

Gene Structure 4633 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh1CG353100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1128 bp

ATGTTCCGAAAGGAAAGGTTTTTTAGTGTGTCACTTGTTGTGTTCTTTGTTCTCTGGCATACTTCATCGGCTGGATATCCGCAGTCACAGTTGAAGGGTACAGCCACATCCACGTCAGTAAATGAACTGAAGGGTGATGTTAATCAAGCTAGTAATGCATATCCCATAGGTTGGGAGCACCTTGATTGGTTCTATGTTTCTGTTCGAATTGGATTGTTTCTTTGGATTGCTCTACTTAATCTAATTACAATTTCTTCAACTTGGGCTAGAGTAATCGATGTTATGGACAGTGAGTCAGGTTCCAGATTATTTGGTTTTATTGGTGCTGGAGCCACACTTGGACAGCTTTGTGGGTCATTGTTTGCCACCGGAATGGCTTTCTTGGGGCCATTTTTACTACTGTTTTCTGCTTTGCTGATGGAGTTTGCGGCACAGTCATCAAAAGGGATAACCCAGGATGTGCCCCATCTCCATGAGGAACTAACACCCATCAGGACGTGTAAACTGGGTTCTGGAACCTTGTTTCATGCTAAAACTAAGCATACTGTGCAGACAAGACCAAGAATTCTCTCTGCTACAATTTTAAAAGCTGAGCCTGATCAGCAGAACGAGCCTGATGGGCAAACCGTTCAAAATATCAAAGGAGTTTCTCCCAAGTCTTCTACTCCGGTGGTGAAGCCTCAGCTTTGGGCCATCTTAGATGGATTTCGGCTTATATTGTCATCATCTTACTTATTGTATGTGTCTTTGTTCCTGTGGCTGAGTGCGGTTGTCTCTTCATTCTTTTATTTTCAGAAAGTAAGTGTCATTGCCATGACTGTTACTAGTTCTCTTGGAAGAAGAAAATTGCTTGCCCAGATAAACAGCTTTATTGCTATTTTTATCCTCGCCGGACAACTTACCATAACGGGGCATTTTCTCACTGTTGTGGGAGTTACTACAGCTATTTGTTCTGCTCCAGTTGTTGCCTTCTTGAATTTGGTTGCAACTGCTATTTGGCCAACTTGGGTAGCCATTGCTATTTCTGAGACCCTGCGGAAGGTTTGTATTCTCAAACTTCCAGTTTGTTACATATGTTGTAGCCAGGCCTGGCAGAGAACTCCTATTTACTGTTGTCTCACAGGATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

TLC

Protein Analysis

375

Amino Acids

41.18

Weight (kDa)

9.23

Isoelectric Point (pI)

32.65

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002256)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G05310 AT5G05310 AT5G05310 AT5G05310 AT5G05310 AT5G05310 AT5G05310 AT5G05310 AT5G05310
fragaria_vesca	FvH4_7g25670 FvH4_7g25670 FvH4_7g25670 FvH4_7g25670 FvH4_7g25670 FvH4_7g25670 FvH4_7g25670 FvH4_7g25670
malus_domestica	MD01G1164100.v1.1 MD05G1328700.v1.1 MD07G1231800.v1.1 MD07G1231900.v1.1
prunus_persica	Prupe.2G261900_v2.0.a1 Prupe.2G261900_v2.0.a1 Prupe.2G261900_v2.0.a1 Prupe.2G261900_v2.0.a1 Prupe.2G261900_v2.0.a1
pyrus_communis	pycom01g17840 pycom07g20960
rosa_chinensis	RchiOBHm_Chr1g0371881 RchiOBHm_Chr1g0371891
rosa_laevigata	RLG00000026938
rosa_multiflora	Rmu_sc0001755.1_g000047
rosa_roxburghii	Rroxscaffold_4G00285400
rosa_rugosa	Rorug01G0366800 Rorug01G0366900 Rorug01G0366900 Rorug01G0367000 Rorug01G0367100
rosa_samantha	Rh1AG376800 Rh1BG340100 Rh1CG353100 Rh1DG371100
rosa_wichuraiana	Rw1G033150

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	171
AciI	CCGC	4 cut(s)	80, 428, 767, 1036
AcoI	YGGCCR	1 cut(s)	998
AcsI	RAATTY	2 cut(s)	564, 976
AcuI	CTGAAG	1 cut(s)	149
AfaI	GTAC	1 cut(s)	100
AfiI	CCNNNNNNNGG	3 cut(s)	171, 909, 1039
AflIII	ACRYGT	1 cut(s)	497
AgsI	TTSAA	4 cut(s)	94, 258, 632, 976
AhdI	GACNNNNNGTC	1 cut(s)	292
AhlI	ACTAGT	1 cut(s)	824
AjiI	CACGTC	2 cut(s)	114, 498
AjnI	CCWGG	3 cut(s)	453, 1083, 1088
AleI	CACNNNNGTG	1 cut(s)	926
AluBI	AGCT	6 cut(s)	149, 346, 590, 685, 867, 944
AluI	AGCT	6 cut(s)	149, 346, 590, 685, 867, 944
Alw21I	GWGCWC	1 cut(s)	180
Alw26I	GTCTC	3 cut(s)	778, 1022, 1121
AoxI	GGCC	4 cut(s)	386, 690, 998, 1086
ApoI	RAATTY	2 cut(s)	564, 976
AspS9I	GGNCC	2 cut(s)	386, 690
AsuHPI	GGTGA	2 cut(s)	146, 685
AsuII	TTCGAA	1 cut(s)	205
BaeGI	GKGCMC	1 cut(s)	465
BalI	TGGCCA	1 cut(s)	1000
BbsI	GAAGAC	1 cut(s)	651
Bbv12I	GWGCWC	1 cut(s)	180
BbvCI	CCTCAGC	1 cut(s)	681
BccI	CCATC	6 cut(s)	412, 474, 497, 611, 695, 701
BciT130I	CCWGG	3 cut(s)	455, 1085, 1090
BclI	TGATCA	1 cut(s)	598
BcoDI	GTCTC	3 cut(s)	778, 1022, 1121
BcuI	ACTAGT	1 cut(s)	824
BfaI	CTAG	3 cut(s)	150, 267, 825
BfmI	CTRYAG	1 cut(s)	939
BglI	GCCNNNNNGGC	1 cut(s)	619
BisI	GCNGC	1 cut(s)	429
BlpI	GCTNAGC	1 cut(s)	591
BlsI	GCNGC	1 cut(s)	430
Bme1390I	CCNGG	3 cut(s)	455, 1085, 1090
BmeRI	GACNNNNNGTC	1 cut(s)	292
BmgBI	CACGTC	2 cut(s)	114, 498
BmgT120I	GGNCC	2 cut(s)	386, 690
BmiI	GGNNCC	4 cut(s)	301, 331, 387, 517
BmrFI	CCNGG	3 cut(s)	455, 1085, 1090
BmrI	ACTGGG	1 cut(s)	515
BmuI	ACTGGG	1 cut(s)	515
BpiI	GAAGAC	1 cut(s)	651
BpmI	CTGGAG	2 cut(s)	348, 942
Bpu10I	CCTNAGC	1 cut(s)	681
Bpu1102I	GCTNAGC	1 cut(s)	591
Bpu14I	TTCGAA	1 cut(s)	205
Bsa29I	ATCGAT	1 cut(s)	276
BsaBI	GATNNNNATC	1 cut(s)	141
BsaI	GGTCTC	1 cut(s)	1022
BsaJI	CCNNGG	1 cut(s)	453
BsaWI	WCCGGW	2 cut(s)	368, 667
Bsc4I	CCNNNNNNNGG	3 cut(s)	171, 909, 1039
Bse1I	ACTGG	3 cut(s)	510, 959, 1061
Bse3DI	GCAATG	2 cut(s)	807, 1014
Bse8I	GATNNNNATC	1 cut(s)	141
BseBI	CCWGG	3 cut(s)	455, 1085, 1090
BseCI	ATCGAT	1 cut(s)	276
BseDI	CCNNGG	1 cut(s)	453
BseGI	GGATG	2 cut(s)	107, 463
BseJI	GATNNNNATC	1 cut(s)	141
BseLI	CCNNNNNNNGG	3 cut(s)	171, 909, 1039
BseMI	GCAATG	2 cut(s)	807, 1014
BseMII	CTCAG	4 cut(s)	582, 695, 752, 1017
BseNI	ACTGG	3 cut(s)	510, 959, 1061
BseSI	GKGCMC	1 cut(s)	465
BsgI	GTGCAG	1 cut(s)	569
BshFI	GGCC	4 cut(s)	388, 692, 1000, 1088
BshVI	ATCGAT	1 cut(s)	276
BsiHKAI	GWGCWC	1 cut(s)	180
BsiSI	CCGG	3 cut(s)	369, 668, 891
BslI	CCNNNNNNNGG	3 cut(s)	171, 909, 1039
BsmAI	GTCTC	3 cut(s)	778, 1022, 1121
BsnI	GGCC	4 cut(s)	388, 692, 1000, 1088
Bso31I	GGTCTC	1 cut(s)	1022
Bsp119I	TTCGAA	1 cut(s)	205
Bsp1286I	GDGCHC	2 cut(s)	180, 465
Bsp143I	GATC	1 cut(s)	598
Bsp1720I	GCTNAGC	1 cut(s)	591
BspACI	CCGC	4 cut(s)	80, 428, 767, 1036
BspANI	GGCC	4 cut(s)	388, 692, 1000, 1088
BspCNI	CTCAG	4 cut(s)	583, 694, 753, 1018
BspDI	ATCGAT	1 cut(s)	276
BspLI	GGNNCC	4 cut(s)	301, 331, 387, 517
BspT104I	TTCGAA	1 cut(s)	205
BspTNI	GGTCTC	1 cut(s)	1022
BsrDI	GCAATG	2 cut(s)	807, 1014
BsrI	ACTGG	3 cut(s)	510, 959, 1061
BssECI	CCNNGG	1 cut(s)	453
BssMI	GATC	1 cut(s)	598
Bst2UI	CCWGG	3 cut(s)	455, 1085, 1090
Bst4CI	ACNGT	9 cut(s)	90, 290, 402, 435, 547, 628, 820, 925, 1112
Bst6I	CTCTTC	1 cut(s)	781
BstAPI	GCANNNNNTGC	1 cut(s)	547
BstBI	TTCGAA	1 cut(s)	205
BstC8I	GCNNGC	1 cut(s)	852
BstDEI	CTNAG	6 cut(s)	537, 591, 681, 697, 761, 1026
BstENI	CCTNNNNNAGG	1 cut(s)	1037
BstF5I	GGATG	2 cut(s)	107, 463
BstKTI	GATC	1 cut(s)	601
BstMAI	GTCTC	3 cut(s)	778, 1022, 1121
BstMBI	GATC	1 cut(s)	598
BstMWI	GCNNNNNNNGC	5 cut(s)	155, 547, 601, 610, 619
BstNI	CCWGG	3 cut(s)	455, 1085, 1090
BstSCI	CCNGG	3 cut(s)	453, 1083, 1088
BstSFI	CTRYAG	1 cut(s)	939
BstSLI	GKGCMC	1 cut(s)	465
BstV2I	GAAGAC	1 cut(s)	651
BstXI	CCANNNNNNTGG	1 cut(s)	373
Bsu15I	ATCGAT	1 cut(s)	276
BsuRI	GGCC	4 cut(s)	388, 692, 1000, 1088
BsuTUI	ATCGAT	1 cut(s)	276
BtrI	CACGTC	2 cut(s)	114, 498
BtsCI	GGATG	2 cut(s)	107, 463
BtsIMutI	CAGTG	2 cut(s)	295, 921
Cac8I	GCNNGC	1 cut(s)	852
Cfr13I	GGNCC	2 cut(s)	386, 690
ClaI	ATCGAT	1 cut(s)	276
Csp6I	GTAC	1 cut(s)	99
CviAII	CATG	3 cut(s)	473, 527, 814
CviQI	GTAC	1 cut(s)	99
DdeI	CTNAG	6 cut(s)	537, 591, 681, 697, 761, 1026
DpnI	GATC	1 cut(s)	600
DpnII	GATC	1 cut(s)	598
DraI	TTTAAA	1 cut(s)	585
DriI	GACNNNNNGTC	1 cut(s)	292
EaeI	YGGCCR	1 cut(s)	998
Eam1104I	CTCTTC	1 cut(s)	781
Eam1105I	GACNNNNNGTC	1 cut(s)	292
EarI	CTCTTC	1 cut(s)	781
Eco147I	AGGCCT	1 cut(s)	1088
Eco31I	GGTCTC	1 cut(s)	1022
Eco32I	GATATC	1 cut(s)	77
Eco57I	CTGAAG	1 cut(s)	149
EcoNI	CCTNNNNNAGG	1 cut(s)	1037
EcoRI	GAATTC	1 cut(s)	564
EcoRII	CCWGG	3 cut(s)	453, 1083, 1088
EcoRV	GATATC	1 cut(s)	77
EcoT22I	ATGCAT	1 cut(s)	160
FaeI	CATG	3 cut(s)	476, 530, 817
FatI	CATG	3 cut(s)	472, 526, 813
FauNDI	CATATG	1 cut(s)	1073
FbaI	TGATCA	1 cut(s)	598
Fnu4HI	GCNGC	1 cut(s)	429
FokI	GGATG	2 cut(s)	94, 470
Fsp4HI	GCNGC	1 cut(s)	429
FspBI	CTAG	3 cut(s)	150, 267, 825
GluI	GCNGC	1 cut(s)	429
GsuI	CTGGAG	2 cut(s)	348, 942
HaeIII	GGCC	4 cut(s)	388, 692, 1000, 1088
HapII	CCGG	3 cut(s)	369, 668, 891
Hin1II	CATG	3 cut(s)	476, 530, 817
HinfI	GANTC	1 cut(s)	293
HpaII	CCGG	3 cut(s)	369, 668, 891
HphI	GGTGA	2 cut(s)	146, 685
Hpy166II	GTNNAC	1 cut(s)	503
Hpy188I	TCNGA	3 cut(s)	8, 795, 1027
Hpy188III	TCNNGA	4 cut(s)	303, 493, 513, 973
Hpy8I	GTNNAC	1 cut(s)	503
HpyAV	CCTTC	4 cut(s)	88, 124, 979, 1033
HpyCH4III	ACNGT	9 cut(s)	90, 290, 402, 435, 547, 628, 820, 925, 1112
HpyCH4IV	ACGT	2 cut(s)	113, 497
HpyCH4V	TGCA	3 cut(s)	158, 550, 986
HpyF10VI	GCNNNNNNNGC	5 cut(s)	155, 547, 601, 610, 619
HpyF3I	CTNAG	6 cut(s)	537, 591, 681, 697, 761, 1026
HpySE526I	ACGT	2 cut(s)	113, 497
Hsp92II	CATG	3 cut(s)	476, 530, 817
Ksp22I	TGATCA	1 cut(s)	598
Kzo9I	GATC	1 cut(s)	598
LmnI	GCTCC	3 cut(s)	175, 329, 961
MaeI	CTAG	3 cut(s)	150, 267, 825
MaeII	ACGT	2 cut(s)	113, 497
MaeIII	GTNAC	5 cut(s)	30, 84, 820, 934, 1067
MalI	GATC	1 cut(s)	600
MboI	GATC	1 cut(s)	598
MboII	GAAGA	5 cut(s)	246, 651, 768, 849, 852
MhlI	GDGCHC	2 cut(s)	180, 465
MlsI	TGGCCA	1 cut(s)	1000
MluCI	AATT	7 cut(s)	207, 243, 249, 564, 579, 845, 976
MluNI	TGGCCA	1 cut(s)	1000
MlyI	GAGTC	1 cut(s)	302
MnlI	CCTC	3 cut(s)	469, 690, 896
Mox20I	TGGCCA	1 cut(s)	1000
Mph1103I	ATGCAT	1 cut(s)	160
MscI	TGGCCA	1 cut(s)	1000
MseI	TTAA	3 cut(s)	141, 237, 584
MslI	CAYNNNNRTG	4 cut(s)	371, 471, 812, 926
Msp20I	TGGCCA	1 cut(s)	1000
MspI	CCGG	3 cut(s)	369, 668, 891
MspR9I	CCNGG	3 cut(s)	455, 1085, 1090
MvaI	CCWGG	3 cut(s)	455, 1085, 1090
MwoI	GCNNNNNNNGC	5 cut(s)	155, 547, 601, 610, 619
NdeI	CATATG	1 cut(s)	1073
NdeII	GATC	1 cut(s)	598
NlaIII	CATG	3 cut(s)	476, 530, 817
NlaIV	GGNNCC	4 cut(s)	301, 331, 387, 517
NmuCI	GTSAC	2 cut(s)	30, 84
NsiI	ATGCAT	1 cut(s)	160
NspV	TTCGAA	1 cut(s)	205
OliI	CACNNNNGTG	1 cut(s)	926
PceI	AGGCCT	1 cut(s)	1088
PflMI	CCANNNNNTGG	1 cut(s)	171
PkrI	GCNGC	1 cut(s)	430
PleI	GAGTC	1 cut(s)	301
PpsI	GAGTC	1 cut(s)	301
Psp6I	CCWGG	3 cut(s)	453, 1083, 1088
PspGI	CCWGG	3 cut(s)	453, 1083, 1088
PspN4I	GGNNCC	4 cut(s)	301, 331, 387, 517
PspPI	GGNCC	2 cut(s)	386, 690
PsrI	GAACNNNNNNTAC	2 cut(s)	493, 525
RsaI	GTAC	1 cut(s)	100
RsaNI	GTAC	1 cut(s)	99
RseI	CAYNNNNRTG	4 cut(s)	371, 471, 812, 926
SaqAI	TTAA	3 cut(s)	141, 237, 584
SatI	GCNGC	1 cut(s)	429
Sau3AI	GATC	1 cut(s)	598
Sau96I	GGNCC	2 cut(s)	386, 690
SchI	GAGTC	1 cut(s)	302
ScrFI	CCNGG	3 cut(s)	455, 1085, 1090
SduI	GDGCHC	2 cut(s)	180, 465
SfcI	CTRYAG	1 cut(s)	939
SfuI	TTCGAA	1 cut(s)	205
SmiMI	CAYNNNNRTG	4 cut(s)	371, 471, 812, 926
SpeI	ACTAGT	1 cut(s)	824
Sse9I	AATT	7 cut(s)	207, 243, 249, 564, 579, 845, 976
SseBI	AGGCCT	1 cut(s)	1088
SsiI	CCGC	4 cut(s)	80, 428, 767, 1036
SspMI	CTAG	3 cut(s)	150, 267, 825
StuI	AGGCCT	1 cut(s)	1088
StyD4I	CCNGG	3 cut(s)	453, 1083, 1088
TaaI	ACNGT	9 cut(s)	90, 290, 402, 435, 547, 628, 820, 925, 1112
TaiI	ACGT	2 cut(s)	116, 500
TaqI	TCGA	2 cut(s)	205, 276
TasI	AATT	7 cut(s)	207, 243, 249, 564, 579, 845, 976
TauI	GCSGC	1 cut(s)	431
Tru1I	TTAA	3 cut(s)	141, 237, 584
Tru9I	TTAA	3 cut(s)	141, 237, 584
TscAI	CASTG	2 cut(s)	295, 928
TseFI	GTSAC	2 cut(s)	30, 84
Tsp45I	GTSAC	2 cut(s)	30, 84
TspDTI	ATGAA	4 cut(s)	54, 138, 515, 768
TspRI	CASTG	2 cut(s)	295, 928
Van91I	CCANNNNNTGG	1 cut(s)	171
XagI	CCTNNNNNAGG	1 cut(s)	1037
XapI	RAATTY	2 cut(s)	564, 976
XspI	CTAG	3 cut(s)	150, 267, 825
Zsp2I	ATGCAT	1 cut(s)	160

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.