Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000004

Orthogroup ID

OG0002256

Physical Location & Seq

Genomic Coordinates Forward (+)

6709681 .. 6714262

Gene Structure 4582 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_4G00285400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1533 bp

ATGAGCAGGTCTCGCGTGGATGCGATTCTGTCCATGTTCGTTACGGTGCACCCTCACGAGACCTCCGCTCTGCTCCACTCCTCGGCTTCCTTCTTCTTCATTTTGTGCGCTTACTTCGTGGTGCTTCCGCTTCGAGATGAAGGTGCAATCTCTTTAGGCCTATCGAACCTTCCGAGCCTATTTATAGGTTCTCTGCTTCTGACTTCCATTGCTGCACCACTCGCAACTCTCTTTTTCTCTTTGCCGAATGTTCCGAAAGGAAAGGCTTTGGTTTTAATGCACAGGTTTTTTAGTGTGTCACTTGTTGTGTTCTTTGTTCTCTGGCATACTTCATCGGCTGGATATCCGCAGTCACAGTTGAAGGGTACAGCCACATCCACGTCAGTAAATGAACTGAAGGGTGATGTTAATCAAGCTAGTACTGCATATCCCATAGGTTGGGAGCACCTTGATTGGTTCTATGTTTCTGTTCGAATTGGATTGTTTCTTTGGATTGCTCTACTTAATCTAATTACAATTTCTTCAACTTGGGCTAGAGTAATCGATGTTATGGACAGTGAGTCAGGTTCCAGATTATTTGGTTTTATTGGTGCTGGAGCCACACTTGGACAGCTTTGTGGGTCATTGTTTGCCACCGGAATGGCTTTCTTGGGGCCATTTTTACTACTGTTTTCTGCTTTGCTGATGGAGTTTGCGGCACAGTCATCAAAAGGGATAACCCAGGATGTGCCCCATCTCCACGAGGAACTAACACCCATCAGGACGTGTAAACTGGGTTCTGGAACCTTGTTTCATGCTAAAACTAAGCATACTGTGCAGACAAGACCAAGAATTCTCTCTGCTACAATTTTGTTGCAATTTAGAAAAGCTGAGCCTGACCAGCAGAACGAGCCTGATAGGCAAACCGTTCAAAATATCAAAGGAGTTTCTCCCAAGTCTTCTACTCCGGTGGTGAAGCCTCAGCTTTGGGCCATCTTAGATGGATTTCGGCTTATATTGTCATCATCTTACTTATTGTATGTGTCTTTGTTCCTGTGGCTGAGTGCGGTTGTCTCTTCATTCTTTTATTTTCAGAAAGTAAGTGTCATTGCCATGACTGTTACTAGTTCTCTTGGAAGAAGAAAATTGCTTGCCCAGATAAACAGCTTTATTGCTATTTTTATCCTCGCCGGACAACTTACCATAACGTTTGTTACATATGTTGTAGCCAGGCCTGGCAGAGAACTCCTATTTACTGTTGTCTCACAGGATGAAAAGTACAAAGCAAAGGTTTGCATTGATGTGTTTGTTCAAAGACTGGGAGATGCTACAGCAGCAGGAATGTACAAGCTACTTTTCAGCACTCTTAATGGGAGAGCATCAACTGTGTCTCTCTACGGCCTGCCTTACGATGGGATAGGTCTGTTTGCTGTGGATAAAACTTATTTACGAGCTTTTAGGGATTTACAAGCAGTTTTGTTAGCTCTTGCAGATGTGACAGAATGGGCAGCACGCCATGCTGTTGTTGCCCTTGGGATGCATACTAGTATATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

TLC

Protein Analysis

510

Amino Acids

55.95

Weight (kDa)

9.45

Isoelectric Point (pI)

35.25

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002256)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G05310 AT5G05310 AT5G05310 AT5G05310 AT5G05310 AT5G05310 AT5G05310 AT5G05310 AT5G05310
fragaria_vesca	FvH4_7g25670 FvH4_7g25670 FvH4_7g25670 FvH4_7g25670 FvH4_7g25670 FvH4_7g25670 FvH4_7g25670 FvH4_7g25670
malus_domestica	MD01G1164100.v1.1 MD05G1328700.v1.1 MD07G1231800.v1.1 MD07G1231900.v1.1
prunus_persica	Prupe.2G261900_v2.0.a1 Prupe.2G261900_v2.0.a1 Prupe.2G261900_v2.0.a1 Prupe.2G261900_v2.0.a1 Prupe.2G261900_v2.0.a1
pyrus_communis	pycom01g17840 pycom07g20960
rosa_chinensis	RchiOBHm_Chr1g0371881 RchiOBHm_Chr1g0371891
rosa_laevigata	RLG00000026938
rosa_multiflora	Rmu_sc0001755.1_g000047
rosa_roxburghii	Rroxscaffold_4G00285400
rosa_rugosa	Rorug01G0366800 Rorug01G0366900 Rorug01G0366900 Rorug01G0367000 Rorug01G0367100
rosa_samantha	Rh1AG376800 Rh1BG340100 Rh1CG353100 Rh1DG371100
rosa_wichuraiana	Rw1G033150

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	438
AccBSI	CCGCTC	1 cut(s)	68
AccII	CGCG	1 cut(s)	15
AciI	CCGC	5 cut(s)	66, 128, 347, 695, 1046
AclI	AACGTT	1 cut(s)	1187
AcsI	RAATTY	1 cut(s)	831
AcuI	CTGAAG	1 cut(s)	416
AfaI	GTAC	4 cut(s)	367, 421, 1259, 1325
AfiI	CCNNNNNNNGG	3 cut(s)	82, 438, 1391
AflIII	ACRYGT	1 cut(s)	764
AgsI	TTSAA	4 cut(s)	361, 525, 911, 1292
AhdI	GACNNNNNGTC	1 cut(s)	559
AhlI	ACTAGT	2 cut(s)	1103, 1523
AjiI	CACGTC	2 cut(s)	381, 765
AjnI	CCWGG	3 cut(s)	720, 1208, 1213
AluBI	AGCT	8 cut(s)	416, 613, 869, 964, 1146, 1330, 1433, 1463
AluI	AGCT	8 cut(s)	416, 613, 869, 964, 1146, 1330, 1433, 1463
Alw21I	GWGCWC	2 cut(s)	51, 447
Alw26I	GTCTC	5 cut(s)	15, 53, 1057, 1246, 1374
Alw44I	GTGCAC	1 cut(s)	47
AoxI	GGCC	5 cut(s)	157, 653, 969, 1211, 1378
ApaLI	GTGCAC	1 cut(s)	47
ApeKI	GCWGC	3 cut(s)	212, 1313, 1487
ApoI	RAATTY	1 cut(s)	831
AspLEI	GCGC	1 cut(s)	110
AspS9I	GGNCC	2 cut(s)	653, 969
AsuHPI	GGTGA	2 cut(s)	413, 964
AsuII	TTCGAA	1 cut(s)	472
BaeGI	GKGCMC	2 cut(s)	51, 732
BauI	CACGAG	2 cut(s)	56, 740
BbsI	GAAGAC	1 cut(s)	930
Bbv12I	GWGCWC	2 cut(s)	51, 447
BbvCI	CCTCAGC	1 cut(s)	960
BbvI	GCAGC	3 cut(s)	199, 1325, 1499
BccI	CCATC	6 cut(s)	679, 741, 764, 974, 980, 1385
BceAI	ACGGC	1 cut(s)	1393
BciT130I	CCWGG	3 cut(s)	722, 1210, 1215
BcoDI	GTCTC	5 cut(s)	15, 53, 1057, 1246, 1374
BcuI	ACTAGT	2 cut(s)	1103, 1523
BfaI	CTAG	4 cut(s)	417, 534, 1104, 1524
BfmI	CTRYAG	1 cut(s)	1308
BglI	GCCNNNNNGGC	1 cut(s)	898
BisI	GCNGC	4 cut(s)	213, 696, 1314, 1488
BlpI	GCTNAGC	1 cut(s)	870
BlsI	GCNGC	4 cut(s)	214, 697, 1315, 1489
BmcAI	AGTACT	1 cut(s)	421
Bme1390I	CCNGG	3 cut(s)	722, 1210, 1215
BmeRI	GACNNNNNGTC	1 cut(s)	559
BmgBI	CACGTC	2 cut(s)	381, 765
BmgT120I	GGNCC	2 cut(s)	653, 969
BmiI	GGNNCC	4 cut(s)	568, 598, 654, 784
BmrFI	CCNGG	3 cut(s)	722, 1210, 1215
BmrI	ACTGGG	2 cut(s)	782, 1307
BmsI	GCATC	4 cut(s)	10, 1294, 1367, 1506
BmuI	ACTGGG	2 cut(s)	782, 1307
BpiI	GAAGAC	1 cut(s)	930
BplI	GAGNNNNNCTC	1 cut(s)	27
BpmI	CTGGAG	1 cut(s)	615
Bpu10I	CCTNAGC	1 cut(s)	960
Bpu1102I	GCTNAGC	1 cut(s)	870
Bpu14I	TTCGAA	1 cut(s)	472
Bsa29I	ATCGAT	1 cut(s)	543
BsaBI	GATNNNNATC	1 cut(s)	408
BsaI	GGTCTC	2 cut(s)	15, 53
BsaJI	CCNNGG	3 cut(s)	81, 720, 1510
BsaWI	WCCGGW	2 cut(s)	635, 946
BsaXI	ACNNNNNCTCC	2 cut(s)	47, 77
Bsc4I	CCNNNNNNNGG	3 cut(s)	82, 438, 1391
Bse1I	ACTGG	2 cut(s)	777, 1302
Bse3DI	GCAATG	2 cut(s)	207, 1086
Bse8I	GATNNNNATC	1 cut(s)	408
BseBI	CCWGG	3 cut(s)	722, 1210, 1215
BseCI	ATCGAT	1 cut(s)	543
BseDI	CCNNGG	3 cut(s)	81, 720, 1510
BseGI	GGATG	5 cut(s)	25, 374, 730, 1255, 1521
BseJI	GATNNNNATC	1 cut(s)	408
BseLI	CCNNNNNNNGG	3 cut(s)	82, 438, 1391
BseMI	GCAATG	2 cut(s)	207, 1086
BseMII	CTCAG	3 cut(s)	861, 974, 1031
BseNI	ACTGG	2 cut(s)	777, 1302
BseRI	GAGGAG	1 cut(s)	70
BseSI	GKGCMC	2 cut(s)	51, 732
BseXI	GCAGC	3 cut(s)	199, 1325, 1499
BsgI	GTGCAG	2 cut(s)	198, 836
Bsh1236I	CGCG	1 cut(s)	15
BshFI	GGCC	5 cut(s)	159, 655, 971, 1213, 1380
BshVI	ATCGAT	1 cut(s)	543
BsiHKAI	GWGCWC	2 cut(s)	51, 447
BsiSI	CCGG	3 cut(s)	636, 947, 1170
BslI	CCNNNNNNNGG	3 cut(s)	82, 438, 1391
BsmAI	GTCTC	5 cut(s)	15, 53, 1057, 1246, 1374
BsnI	GGCC	5 cut(s)	159, 655, 971, 1213, 1380
Bso31I	GGTCTC	2 cut(s)	15, 53
Bsp119I	TTCGAA	1 cut(s)	472
Bsp1286I	GDGCHC	3 cut(s)	51, 447, 732
Bsp1407I	TGTACA	1 cut(s)	1323
Bsp1720I	GCTNAGC	1 cut(s)	870
BspACI	CCGC	5 cut(s)	66, 128, 347, 695, 1046
BspANI	GGCC	5 cut(s)	159, 655, 971, 1213, 1380
BspCNI	CTCAG	3 cut(s)	862, 973, 1032
BspDI	ATCGAT	1 cut(s)	543
BspFNI	CGCG	1 cut(s)	15
BspLI	GGNNCC	4 cut(s)	568, 598, 654, 784
BspT104I	TTCGAA	1 cut(s)	472
BspTNI	GGTCTC	2 cut(s)	15, 53
BsrBI	CCGCTC	1 cut(s)	68
BsrDI	GCAATG	2 cut(s)	207, 1086
BsrGI	TGTACA	1 cut(s)	1323
BsrI	ACTGG	2 cut(s)	777, 1302
BssECI	CCNNGG	3 cut(s)	81, 720, 1510
BssSI	CACGAG	2 cut(s)	56, 740
BssT1I	CCWWGG	1 cut(s)	1510
Bst2BI	CACGAG	2 cut(s)	56, 740
Bst2UI	CCWGG	3 cut(s)	722, 1210, 1215
Bst6I	CTCTTC	1 cut(s)	1060
BstAPI	GCANNNNNTGC	2 cut(s)	814, 1496
BstAUI	TGTACA	1 cut(s)	1323
BstBI	TTCGAA	1 cut(s)	472
BstC8I	GCNNGC	3 cut(s)	1131, 1382, 1492
BstDEI	CTNAG	5 cut(s)	804, 870, 960, 976, 1040
BstF5I	GGATG	5 cut(s)	25, 374, 730, 1255, 1521
BstFNI	CGCG	1 cut(s)	15
BstHHI	GCGC	1 cut(s)	110
BstMAI	GTCTC	5 cut(s)	15, 53, 1057, 1246, 1374
BstNI	CCWGG	3 cut(s)	722, 1210, 1215
BstSCI	CCNGG	3 cut(s)	720, 1208, 1213
BstSFI	CTRYAG	1 cut(s)	1308
BstSLI	GKGCMC	2 cut(s)	51, 732
BstUI	CGCG	1 cut(s)	15
BstV1I	GCAGC	3 cut(s)	199, 1325, 1499
BstV2I	GAAGAC	1 cut(s)	930
BstXI	CCANNNNNNTGG	1 cut(s)	640
Bsu15I	ATCGAT	1 cut(s)	543
BsuRI	GGCC	5 cut(s)	159, 655, 971, 1213, 1380
BsuTUI	ATCGAT	1 cut(s)	543
BtrI	CACGTC	2 cut(s)	381, 765
BtsCI	GGATG	5 cut(s)	25, 374, 730, 1255, 1521
BtsIMutI	CAGTG	1 cut(s)	562
Cac8I	GCNNGC	3 cut(s)	1131, 1382, 1492
CfoI	GCGC	1 cut(s)	110
Cfr13I	GGNCC	2 cut(s)	653, 969
ClaI	ATCGAT	1 cut(s)	543
Csp6I	GTAC	4 cut(s)	366, 420, 1258, 1324
CviAII	CATG	4 cut(s)	34, 794, 1093, 1496
CviQI	GTAC	4 cut(s)	366, 420, 1258, 1324
DdeI	CTNAG	5 cut(s)	804, 870, 960, 976, 1040
DriI	GACNNNNNGTC	1 cut(s)	559
Eam1104I	CTCTTC	1 cut(s)	1060
Eam1105I	GACNNNNNGTC	1 cut(s)	559
EarI	CTCTTC	1 cut(s)	1060
Eco130I	CCWWGG	1 cut(s)	1510
Eco147I	AGGCCT	2 cut(s)	159, 1213
Eco31I	GGTCTC	2 cut(s)	15, 53
Eco32I	GATATC	1 cut(s)	344
Eco57I	CTGAAG	1 cut(s)	416
EcoRI	GAATTC	1 cut(s)	831
EcoRII	CCWGG	3 cut(s)	720, 1208, 1213
EcoRV	GATATC	1 cut(s)	344
EcoT14I	CCWWGG	1 cut(s)	1510
EcoT22I	ATGCAT	1 cut(s)	1521
ErhI	CCWWGG	1 cut(s)	1510
FaeI	CATG	4 cut(s)	37, 797, 1096, 1499
FatI	CATG	4 cut(s)	33, 793, 1092, 1495
FauNDI	CATATG	1 cut(s)	1198
Fnu4HI	GCNGC	4 cut(s)	213, 696, 1314, 1488
FokI	GGATG	5 cut(s)	32, 361, 737, 1262, 1528
Fsp4HI	GCNGC	4 cut(s)	213, 696, 1314, 1488
FspBI	CTAG	4 cut(s)	417, 534, 1104, 1524
GlaI	GCGC	1 cut(s)	109
GluI	GCNGC	4 cut(s)	213, 696, 1314, 1488
GsuI	CTGGAG	1 cut(s)	615
HaeIII	GGCC	5 cut(s)	159, 655, 971, 1213, 1380
HapII	CCGG	3 cut(s)	636, 947, 1170
HhaI	GCGC	1 cut(s)	110
Hin1II	CATG	4 cut(s)	37, 797, 1096, 1499
Hin6I	GCGC	1 cut(s)	108
HinP1I	GCGC	1 cut(s)	108
HinfI	GANTC	2 cut(s)	25, 560
HpaII	CCGG	3 cut(s)	636, 947, 1170
HphI	GGTGA	2 cut(s)	413, 964
Hpy166II	GTNNAC	2 cut(s)	49, 770
Hpy188I	TCNGA	4 cut(s)	174, 201, 255, 1074
Hpy188III	TCNNGA	5 cut(s)	56, 134, 570, 760, 780
Hpy8I	GTNNAC	2 cut(s)	49, 770
HpyAV	CCTTC	5 cut(s)	100, 134, 179, 355, 391
HpyCH4IV	ACGT	3 cut(s)	380, 764, 1187
HpyF3I	CTNAG	5 cut(s)	804, 870, 960, 976, 1040
HpySE526I	ACGT	3 cut(s)	380, 764, 1187
Hsp92II	CATG	4 cut(s)	37, 797, 1096, 1499
HspAI	GCGC	1 cut(s)	108
LmnI	GCTCC	3 cut(s)	78, 442, 596
Lsp1109I	GCAGC	3 cut(s)	199, 1325, 1499
LweI	GCATC	4 cut(s)	10, 1294, 1367, 1506
MaeI	CTAG	4 cut(s)	417, 534, 1104, 1524
MaeII	ACGT	3 cut(s)	380, 764, 1187
MaeIII	GTNAC	6 cut(s)	40, 297, 351, 1099, 1192, 1474
MbiI	CCGCTC	1 cut(s)	68
MboII	GAAGA	7 cut(s)	85, 88, 513, 930, 1047, 1128, 1131
MhlI	GDGCHC	3 cut(s)	51, 447, 732
MluCI	AATT	7 cut(s)	474, 510, 516, 831, 846, 857, 1124
MlyI	GAGTC	1 cut(s)	569
MnlI	CCTC	6 cut(s)	63, 73, 91, 736, 969, 1175
Mph1103I	ATGCAT	1 cut(s)	1521
MseI	TTAA	4 cut(s)	275, 408, 504, 1347
MslI	CAYNNNNRTG	3 cut(s)	638, 1091, 1280
MspI	CCGG	3 cut(s)	636, 947, 1170
MspR9I	CCNGG	3 cut(s)	722, 1210, 1215
MvaI	CCWGG	3 cut(s)	722, 1210, 1215
MvnI	CGCG	1 cut(s)	15
NdeI	CATATG	1 cut(s)	1198
NlaIII	CATG	4 cut(s)	37, 797, 1096, 1499
NlaIV	GGNNCC	4 cut(s)	568, 598, 654, 784
NmeAIII	GCCGAG	1 cut(s)	62
NmuCI	GTSAC	3 cut(s)	297, 351, 1474
NsiI	ATGCAT	1 cut(s)	1521
NspV	TTCGAA	1 cut(s)	472
PceI	AGGCCT	2 cut(s)	159, 1213
PcsI	WCGNNNNNNNCGW	1 cut(s)	170
PfeI	GAWTC	1 cut(s)	25
PflMI	CCANNNNNTGG	1 cut(s)	438
PkrI	GCNGC	4 cut(s)	214, 697, 1315, 1489
PleI	GAGTC	1 cut(s)	568
PpsI	GAGTC	1 cut(s)	568
Psp1406I	AACGTT	1 cut(s)	1187
Psp6I	CCWGG	3 cut(s)	720, 1208, 1213
PspGI	CCWGG	3 cut(s)	720, 1208, 1213
PspN4I	GGNNCC	4 cut(s)	568, 598, 654, 784
PspPI	GGNCC	2 cut(s)	653, 969
PsrI	GAACNNNNNNTAC	2 cut(s)	760, 792
RsaI	GTAC	4 cut(s)	367, 421, 1259, 1325
RsaNI	GTAC	4 cut(s)	366, 420, 1258, 1324
RseI	CAYNNNNRTG	3 cut(s)	638, 1091, 1280
SaqAI	TTAA	4 cut(s)	275, 408, 504, 1347
SatI	GCNGC	4 cut(s)	213, 696, 1314, 1488
Sau96I	GGNCC	2 cut(s)	653, 969
ScaI	AGTACT	1 cut(s)	421
SchI	GAGTC	1 cut(s)	569
ScrFI	CCNGG	3 cut(s)	722, 1210, 1215
SduI	GDGCHC	3 cut(s)	51, 447, 732
SfaNI	GCATC	4 cut(s)	10, 1294, 1367, 1506
SfcI	CTRYAG	1 cut(s)	1308
SfuI	TTCGAA	1 cut(s)	472
SmiMI	CAYNNNNRTG	3 cut(s)	638, 1091, 1280
SpeI	ACTAGT	2 cut(s)	1103, 1523
Sse9I	AATT	7 cut(s)	474, 510, 516, 831, 846, 857, 1124
SseBI	AGGCCT	2 cut(s)	159, 1213
SsiI	CCGC	5 cut(s)	66, 128, 347, 695, 1046
SspMI	CTAG	4 cut(s)	417, 534, 1104, 1524
StuI	AGGCCT	2 cut(s)	159, 1213
StyD4I	CCNGG	3 cut(s)	720, 1208, 1213
StyI	CCWWGG	1 cut(s)	1510
TaiI	ACGT	3 cut(s)	383, 767, 1190
TaqI	TCGA	4 cut(s)	133, 164, 472, 543
TasI	AATT	7 cut(s)	474, 510, 516, 831, 846, 857, 1124
TatI	WGTACW	3 cut(s)	419, 1257, 1323
TauI	GCSGC	1 cut(s)	698
TfiI	GAWTC	1 cut(s)	25
Tru1I	TTAA	4 cut(s)	275, 408, 504, 1347
Tru9I	TTAA	4 cut(s)	275, 408, 504, 1347
TscAI	CASTG	1 cut(s)	562
TseFI	GTSAC	3 cut(s)	297, 351, 1474
TseI	GCWGC	3 cut(s)	212, 1313, 1487
Tsp45I	GTSAC	3 cut(s)	297, 351, 1474
TspDTI	ATGAA	7 cut(s)	88, 153, 321, 405, 782, 1047, 1266
TspRI	CASTG	1 cut(s)	562
Van91I	CCANNNNNTGG	1 cut(s)	438
VneI	GTGCAC	1 cut(s)	47
XapI	RAATTY	1 cut(s)	831
XspI	CTAG	4 cut(s)	417, 534, 1104, 1524
ZrmI	AGTACT	1 cut(s)	421
Zsp2I	ATGCAT	1 cut(s)	1521

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.