AT5G06610

Protein of unknown function (DUF620)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
5
OG0007318
Physical Location & Seq
Forward (+)
2029793 .. 2033723
3931 bp
Loading structure...
UTR
Exon/CDS
Intron
AT5G06610.1

Sequence Viewer

Length: 1107 bp
ATGCAGAGATTAGCTCCATTGATGGAAGAACCAATAGATGAAGAAGATCAAGAAGAAGAAAGAGGAGGAAGAAAAGGATCAACAAGATCCAAATCATGGAAGAAATGGATAAAGACACAATTGCAGTTCATCGTCTTCCCCAAGAAACCAGACATGAAGCTTCTTCTTAGTGTTATGGGATGTCCTCTCTTCCCTGTCCCTCCTCTCTCCAAAATCTCTCTTCAACAGGTATCATCATCAGCACAATACATAATACAACAGTTTGCCGCAGCAACCGGATGCAAGAAACTTGCGGGCGAAATCAAAAACACTTTCGTGACCGGAAAAATCACAATGACTATGGTGAGTGATATTAATAGCTCAACCGCGGTCAGTAGTGCCTCGTCTGTGTCTCATAAGGGATGCTTTGTCATGTGGCAAATGCTACCTGAAAAATGGCTTATCGAGTTGGTTGGTGGCGGCCATAAGGTTTCAGCCGGTAGTGATGGAGAAATTACTTGGCGTTATACACCATGGCTCGGTGATCATGCAGCTAAAGGTGCCATAAGGCCTTTGCGACGTGCTCTACAAGGGTTGGATCCTCTAACCATTTCATCAGTTTTCTCATCGGCACAATTCGTTGGAGAGAAAGAAATCAATGGGAAGGATTGTTTCATTCTCAAGTTATCAACCGACCAAATCGATTTATCAAAACGCAGTGACTCTACCGCTGAGATGATCAAACACGTCGCATTCGGTTACTTCAGCCAAAAAAGTGGCCTCTTAATTTGCCTTGAAGACTCTTCCTTAACCAGGATTCAGATACCAGGAACTGTGCCAACATATTGGGAGACCTCAATGTCGTCGTGGATGGAAGACTACCGAGCAATAGAAGGTAGTGAAGTGGTAATAGCACACTCAGGTAAGACAGATGTGTTAATCTCAAGATTTGGAGAAACTCTCAAAGGAGGAATCTCTGTGACTCGAATGGAAGAGAAATGGACTATAGACGATGTTGCATTCGACGTGCCTGGTCTCTCCGTTGATTGTTTTATTCCTCCTAAAGAGATGAAGATGGATTTTCACCACCAAGATGCTCAAAAACATTTACCAAACTACAATACATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF620

Protein Analysis

368

Amino Acids

40.94

Weight (kDa)

6.72

Isoelectric Point (pI)

39.3

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF620 PF04788 105 - 347 2e-102 Protein of unknown function (DUF620)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 838
AccB1I GGYRCC 1 cut(s) 539
AccB7I CCANNNNNTGG 1 cut(s) 96
AccII CGCG 1 cut(s) 368
AciI CCGC 6 cut(s) 267, 293, 366, 368, 459, 708
AclWI GGATC 4 cut(s) 81, 85, 572, 585
AcoI YGGCCR 1 cut(s) 460
AcuI CTGAAG 1 cut(s) 727
AfiI CCNNNNNNNGG 3 cut(s) 96, 518, 792
AflIII ACRYGT 1 cut(s) 724
AgsI TTSAA 2 cut(s) 224, 776
AjiI CACGTC 3 cut(s) 560, 727, 1006
AjnI CCWGG 3 cut(s) 791, 805, 1009
AleI CACNNNNGTG 1 cut(s) 314
AluBI AGCT 4 cut(s) 14, 160, 360, 533
AluI AGCT 4 cut(s) 14, 160, 360, 533
Alw21I GWGCWC 1 cut(s) 565
Alw26I GTCTC 3 cut(s) 396, 824, 1019
AlwI GGATC 4 cut(s) 81, 85, 572, 585
AlwNI CAGNNNCTG 1 cut(s) 812
AoxI GGCC 3 cut(s) 460, 548, 757
ApeKI GCWGC 2 cut(s) 269, 530
AseI ATTAAT 1 cut(s) 354
AsuHPI GGTGA 3 cut(s) 355, 533, 1055
BamHI GGATCC 1 cut(s) 577
BanI GGYRCC 1 cut(s) 539
BbsI GAAGAC 3 cut(s) 127, 783, 861
Bbv12I GWGCWC 1 cut(s) 565
BbvI GCAGC 2 cut(s) 281, 542
BccI CCATC 4 cut(s) 16, 479, 844, 1048
BciT130I CCWGG 3 cut(s) 793, 807, 1011
BclI TGATCA 2 cut(s) 523, 717
BcoDI GTCTC 3 cut(s) 396, 824, 1019
BfmI CTRYAG 1 cut(s) 984
BisI GCNGC 4 cut(s) 267, 270, 460, 531
BlsI GCNGC 4 cut(s) 268, 271, 461, 532
Bme1390I CCNGG 3 cut(s) 793, 807, 1011
BmgBI CACGTC 3 cut(s) 560, 727, 1006
BmiI GGNNCC 2 cut(s) 541, 579
BmrFI CCNGG 3 cut(s) 793, 807, 1011
BmsI GCATC 3 cut(s) 269, 392, 1063
BpiI GAAGAC 3 cut(s) 127, 783, 861
BplI GAGNNNNNCTC 3 cut(s) 30, 924, 956
BpuEI CTTGAG 2 cut(s) 644, 907
Bsa29I ATCGAT 1 cut(s) 681
BsaBI GATNNNNATC 1 cut(s) 91
BsaI GGTCTC 2 cut(s) 824, 1019
BsaJI CCNNGG 2 cut(s) 366, 512
BsaWI WCCGGW 2 cut(s) 275, 320
Bsc4I CCNNNNNNNGG 3 cut(s) 96, 518, 792
Bse118I RCCGGY 1 cut(s) 476
Bse8I GATNNNNATC 1 cut(s) 91
BseBI CCWGG 3 cut(s) 793, 807, 1011
BseCI ATCGAT 1 cut(s) 681
BseDI CCNNGG 2 cut(s) 366, 512
BseGI GGATG 4 cut(s) 185, 284, 407, 855
BseJI GATNNNNATC 1 cut(s) 91
BseLI CCNNNNNNNGG 3 cut(s) 96, 518, 792
BseMII CTCAG 2 cut(s) 702, 912
BseRI GAGGAG 2 cut(s) 78, 192
BseXI GCAGC 2 cut(s) 281, 542
Bsh1236I CGCG 1 cut(s) 368
BshFI GGCC 3 cut(s) 462, 550, 759
BshNI GGYRCC 1 cut(s) 539
BshVI ATCGAT 1 cut(s) 681
BsiHKAI GWGCWC 1 cut(s) 565
BsiSI CCGG 3 cut(s) 276, 321, 477
BslFI GGGAC 1 cut(s) 182
BslI CCNNNNNNNGG 3 cut(s) 96, 518, 792
BsmAI GTCTC 3 cut(s) 396, 824, 1019
BsmFI GGGAC 1 cut(s) 182
BsmI GAATGC 2 cut(s) 731, 998
BsnI GGCC 3 cut(s) 462, 550, 759
Bso31I GGTCTC 2 cut(s) 824, 1019
Bsp1286I GDGCHC 1 cut(s) 565
Bsp143I GATC 6 cut(s) 46, 77, 86, 523, 577, 717
Bsp19I CCATGG 1 cut(s) 512
BspACI CCGC 6 cut(s) 267, 293, 366, 368, 459, 708
BspANI GGCC 3 cut(s) 462, 550, 759
BspCNI CTCAG 2 cut(s) 703, 911
BspDI ATCGAT 1 cut(s) 681
BspFNI CGCG 1 cut(s) 368
BspLI GGNNCC 2 cut(s) 541, 579
BspPI GGATC 4 cut(s) 81, 85, 572, 585
BspT107I GGYRCC 1 cut(s) 539
BspTNI GGTCTC 2 cut(s) 824, 1019
BsrFI RCCGGY 1 cut(s) 476
BssAI RCCGGY 1 cut(s) 476
BssECI CCNNGG 2 cut(s) 366, 512
BssMI GATC 6 cut(s) 46, 77, 86, 523, 577, 717
BssT1I CCWWGG 1 cut(s) 512
Bst2UI CCWGG 3 cut(s) 793, 807, 1011
Bst4CI ACNGT 2 cut(s) 261, 814
Bst6I CTCTTC 4 cut(s) 194, 225, 787, 966
BstC8I GCNNGC 1 cut(s) 295
BstDEI CTNAG 3 cut(s) 167, 711, 898
BstDSI CCRYGG 2 cut(s) 366, 512
BstENI CCTNNNNNAGG 1 cut(s) 790
BstF5I GGATG 4 cut(s) 185, 284, 407, 855
BstFNI CGCG 1 cut(s) 368
BstKTI GATC 6 cut(s) 49, 80, 89, 526, 580, 720
BstMAI GTCTC 3 cut(s) 396, 824, 1019
BstMBI GATC 6 cut(s) 46, 77, 86, 523, 577, 717
BstMWI GCNNNNNNNGC 1 cut(s) 539
BstNI CCWGG 3 cut(s) 793, 807, 1011
BstSCI CCNGG 3 cut(s) 791, 805, 1009
BstSFI CTRYAG 1 cut(s) 984
BstUI CGCG 1 cut(s) 368
BstV1I GCAGC 2 cut(s) 281, 542
BstV2I GAAGAC 3 cut(s) 127, 783, 861
BstX2I RGATCY 2 cut(s) 86, 577
BstXI CCANNNNNNTGG 2 cut(s) 755, 825
BstYI RGATCY 2 cut(s) 86, 577
Bsu15I ATCGAT 1 cut(s) 681
BsuRI GGCC 3 cut(s) 462, 550, 759
BsuTUI ATCGAT 1 cut(s) 681
BtgI CCRYGG 2 cut(s) 366, 512
BtrI CACGTC 3 cut(s) 560, 727, 1006
BtsCI GGATG 4 cut(s) 185, 284, 407, 855
BtsI GCAGTG 1 cut(s) 703
BtsIMutI CAGTG 1 cut(s) 703
Cac8I GCNNGC 1 cut(s) 295
CaiI CAGNNNCTG 1 cut(s) 812
Cfr10I RCCGGY 1 cut(s) 476
Cfr42I CCGCGG 1 cut(s) 369
ClaI ATCGAT 1 cut(s) 681
CviAII CATG 6 cut(s) 96, 154, 412, 513, 527, 1104
DdeI CTNAG 3 cut(s) 167, 711, 898
DpnI GATC 6 cut(s) 48, 79, 88, 525, 579, 719
DpnII GATC 6 cut(s) 46, 77, 86, 523, 577, 717
DrdI GACNNNNNNGTC 1 cut(s) 838
DseDI GACNNNNNNGTC 1 cut(s) 838
EaeI YGGCCR 1 cut(s) 460
Eam1104I CTCTTC 4 cut(s) 194, 225, 787, 966
EarI CTCTTC 4 cut(s) 194, 225, 787, 966
Eco130I CCWWGG 1 cut(s) 512
Eco147I AGGCCT 1 cut(s) 550
Eco31I GGTCTC 2 cut(s) 824, 1019
Eco57I CTGAAG 1 cut(s) 727
EcoNI CCTNNNNNAGG 1 cut(s) 790
EcoRII CCWGG 3 cut(s) 791, 805, 1009
EcoT14I CCWWGG 1 cut(s) 512
ErhI CCWWGG 1 cut(s) 512
FaeI CATG 6 cut(s) 99, 157, 415, 516, 530, 1107
FalI AAGNNNNNCTT 2 cut(s) 389, 421
FaqI GGGAC 1 cut(s) 182
FatI CATG 6 cut(s) 95, 153, 411, 512, 526, 1103
FauI CCCGC 1 cut(s) 286
FbaI TGATCA 2 cut(s) 523, 717
Fnu4HI GCNGC 4 cut(s) 267, 270, 460, 531
FokI GGATG 4 cut(s) 192, 291, 414, 862
Fsp4HI GCNGC 4 cut(s) 267, 270, 460, 531
GluI GCNGC 4 cut(s) 267, 270, 460, 531
HaeIII GGCC 3 cut(s) 462, 550, 759
HapII CCGG 3 cut(s) 276, 321, 477
Hin1II CATG 6 cut(s) 99, 157, 415, 516, 530, 1107
HindIII AAGCTT 1 cut(s) 158
HinfI GANTC 5 cut(s) 701, 779, 796, 951, 961
HpaII CCGG 3 cut(s) 276, 321, 477
HphI GGTGA 3 cut(s) 355, 533, 1055
Hpy188I TCNGA 1 cut(s) 801
Hpy188III TCNNGA 3 cut(s) 50, 316, 924
Hpy99I CGWCG 4 cut(s) 561, 731, 847, 1007
HpyAV CCTTC 2 cut(s) 637, 866
HpyCH4III ACNGT 2 cut(s) 261, 814
HpyCH4IV ACGT 3 cut(s) 559, 726, 1005
HpyCH4V TGCA 5 cut(s) 4, 124, 282, 530, 998
HpyF10VI GCNNNNNNNGC 1 cut(s) 539
HpyF3I CTNAG 3 cut(s) 167, 711, 898
HpySE526I ACGT 3 cut(s) 559, 726, 1005
Hsp92II CATG 6 cut(s) 99, 157, 415, 516, 530, 1107
Ksp22I TGATCA 2 cut(s) 523, 717
KspI CCGCGG 1 cut(s) 369
Kzo9I GATC 6 cut(s) 46, 77, 86, 523, 577, 717
LmnI GCTCC 1 cut(s) 19
Lsp1109I GCAGC 2 cut(s) 281, 542
LweI GCATC 3 cut(s) 269, 392, 1063
MaeII ACGT 3 cut(s) 559, 726, 1005
MaeIII GTNAC 4 cut(s) 316, 698, 737, 958
MalI GATC 6 cut(s) 48, 79, 88, 525, 579, 719
MboI GATC 6 cut(s) 46, 77, 86, 523, 577, 717
MfeI CAATTG 1 cut(s) 119
MflI RGATCY 2 cut(s) 86, 577
MhlI GDGCHC 1 cut(s) 565
MluCI AATT 4 cut(s) 119, 492, 614, 765
MlyI GAGTC 3 cut(s) 695, 773, 955
MmeI TCCRAC 2 cut(s) 555, 601
MseI TTAA 4 cut(s) 354, 764, 788, 917
MslI CAYNNNNRTG 2 cut(s) 314, 1071
MspA1I CMGCKG 2 cut(s) 368, 710
MspI CCGG 3 cut(s) 276, 321, 477
MspR9I CCNGG 3 cut(s) 793, 807, 1011
MunI CAATTG 1 cut(s) 119
Mva1269I GAATGC 2 cut(s) 731, 998
MvaI CCWGG 3 cut(s) 793, 807, 1011
MvnI CGCG 1 cut(s) 368
MwoI GCNNNNNNNGC 1 cut(s) 539
NcoI CCATGG 1 cut(s) 512
NdeII GATC 6 cut(s) 46, 77, 86, 523, 577, 717
NlaIII CATG 6 cut(s) 99, 157, 415, 516, 530, 1107
NlaIV GGNNCC 2 cut(s) 541, 579
NmuCI GTSAC 3 cut(s) 316, 698, 958
OliI CACNNNNGTG 1 cut(s) 314
PceI AGGCCT 1 cut(s) 550
PctI GAATGC 2 cut(s) 731, 998
PfeI GAWTC 2 cut(s) 796, 951
PflMI CCANNNNNTGG 1 cut(s) 96
PkrI GCNGC 4 cut(s) 268, 271, 461, 532
PleI GAGTC 3 cut(s) 695, 773, 955
PpsI GAGTC 3 cut(s) 695, 773, 955
PshBI ATTAAT 1 cut(s) 354
Psp6I CCWGG 3 cut(s) 791, 805, 1009
PspGI CCWGG 3 cut(s) 791, 805, 1009
PspN4I GGNNCC 2 cut(s) 541, 579
PstNI CAGNNNCTG 1 cut(s) 812
PsuI RGATCY 2 cut(s) 86, 577
RseI CAYNNNNRTG 2 cut(s) 314, 1071
SacII CCGCGG 1 cut(s) 369
SaqAI TTAA 4 cut(s) 354, 764, 788, 917
SatI GCNGC 4 cut(s) 267, 270, 460, 531
Sau3AI GATC 6 cut(s) 46, 77, 86, 523, 577, 717
SchI GAGTC 3 cut(s) 695, 773, 955
ScrFI CCNGG 3 cut(s) 793, 807, 1011
SduI GDGCHC 1 cut(s) 565
SfaNI GCATC 3 cut(s) 269, 392, 1063
SfcI CTRYAG 1 cut(s) 984
Sfr303I CCGCGG 1 cut(s) 369
SgrBI CCGCGG 1 cut(s) 369
SmiMI CAYNNNNRTG 2 cut(s) 314, 1071
SmlI CTYRAG 2 cut(s) 659, 922
SmoI CTYRAG 2 cut(s) 659, 922
Sse9I AATT 4 cut(s) 119, 492, 614, 765
SseBI AGGCCT 1 cut(s) 550
SsiI CCGC 6 cut(s) 267, 293, 366, 368, 459, 708
StuI AGGCCT 1 cut(s) 550
StyD4I CCNGG 3 cut(s) 791, 805, 1009
StyI CCWWGG 1 cut(s) 512
TaaI ACNGT 2 cut(s) 261, 814
TaiI ACGT 3 cut(s) 562, 729, 1008
TaqI TCGA 4 cut(s) 444, 681, 964, 1002
TasI AATT 4 cut(s) 119, 492, 614, 765
TauI GCSGC 2 cut(s) 269, 462
TfiI GAWTC 2 cut(s) 796, 951
Tru1I TTAA 4 cut(s) 354, 764, 788, 917
Tru9I TTAA 4 cut(s) 354, 764, 788, 917
TscAI CASTG 1 cut(s) 703
TseFI GTSAC 3 cut(s) 316, 698, 958
TseI GCWGC 2 cut(s) 269, 530
Tsp45I GTSAC 3 cut(s) 316, 698, 958
TspDTI ATGAA 6 cut(s) 54, 118, 170, 582, 643, 1064
TspGWI ACGGA 1 cut(s) 1009
TspRI CASTG 1 cut(s) 703
Van91I CCANNNNNTGG 1 cut(s) 96
VspI ATTAAT 1 cut(s) 354
XagI CCTNNNNNAGG 1 cut(s) 790
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.