FvH4_6g21510

Protein of unknown function (DUF620)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb6
OG0007318
Physical Location & Seq
Forward (+)
15101404 .. 15105163
3760 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_6g21510.t1

Sequence Viewer

Length: 1098 bp
ATGGGTCGGCTTGCACCATTGTCAGAAGAGCCCAATATTAACGAAGAAGAAGATGCTACAAATCGCTCAAGCAAAGGCATAATGAGAAGTCAGACATGGAGGAAATGGATCAAGACCCACCTCACTTCCCTTGCCATCTTCAACAAGAGGTCTGACTTCAAAGTCCTCCTCAGCGTTCTGGGTTGCCCTCTCTTCCCTGTCTCTGCCCTCCCCAAACTGCCCCTCAACGAGGTGTCCTCTACTGCACAATACATAATACAACACTTCACAGCAGCCACAGGCTGCCGCAAGCTAGAAGGTAAAGTCAGGAACATTTTCGCAACCGGGAAAGTGAACATGGCGATGGTAGCTGATCCTGGTCCTGGCAGCTCCACCAGTGGAGCCACCACCATATCGGAAAAAGGGTGCTTTGTAATGTGGCAGATGATTCCTAATAAGTGGCTGATTGAGCTAGTTTTGGGCGGTCACAAGATAGCAGCTGGTAGTGATGGCAATGTGGCATGGCGGCACACGCCCTGGCTTGGAGCTCACGCCGCCAAAGGCGGTGTCCGTCCTCTCCGGCGAGCACTCCAGGGACTTGACCCCATGGCGATATCAGCTGTATTTGCCCCAGCTCAGTACATGGGCGAAAAGCAAATTTCAGGCGTCGATTGCTTTTTCTTAAAATTGTCAGCCAGTCAGACGGATCTCTCTGAACGAAGCGATAGCACTGCCGAGATGATCAAACATGTGATATTTGGTTACTTCAGCCAAAGAAATGGACTACTAGTGTATTTAGAAGACTCATACTTAACTAGGATCCAGTCACCTGGTGCCTATCCTACATACTGGGAGACCACAATGTCGACAAAGATCGAGGATTACCGGACGGTGGAAGAGGTGATGATCGCGCACGCCGGTCAAACGAGTGTGGTCATCACACAATTCGGGGACAATTTGAAGACGGGCTCTGCAATCACACGGTTAGAAGAAACATGGAGCATCGATGATCTTGCGTTCAATGTTGAAGGCCTCTCTATGGATTGTTTCATTCCTCCTAAAGAAGTGCAGAAAGATCACCCGAAGAAAACTCTCGATTGGAGATCACCATTGCAATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF620

Protein Analysis

366

Amino Acids

40.4

Weight (kDa)

8.18

Isoelectric Point (pI)

42.8

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF620 PF04788 106 - 346 2.5e-102 Protein of unknown function (DUF620)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 2 cut(s) 161, 841
AccB1I GGYRCC 1 cut(s) 812
AccI GTMKAC 1 cut(s) 845
AccII CGCG 1 cut(s) 890
AciI CCGC 5 cut(s) 286, 462, 505, 534, 543
AclWI GGATC 5 cut(s) 116, 347, 693, 793, 806
AcsI RAATTY 1 cut(s) 636
AcuI CTGAAG 1 cut(s) 730
AcyI GRCGYC 1 cut(s) 645
AdeI CACNNNGTG 1 cut(s) 812
AfaI GTAC 1 cut(s) 620
AfiI CCNNNNNNNGG 5 cut(s) 229, 362, 521, 871, 1018
AflIII ACRYGT 1 cut(s) 727
AgsI TTSAA 5 cut(s) 142, 160, 940, 1000, 1007
AhlI ACTAGT 1 cut(s) 766
AjnI CCWGG 5 cut(s) 355, 361, 515, 570, 808
AluBI AGCT 8 cut(s) 292, 350, 369, 451, 479, 527, 599, 614
AluI AGCT 8 cut(s) 292, 350, 369, 451, 479, 527, 599, 614
Alw21I GWGCWC 2 cut(s) 529, 568
Alw26I GTCTC 2 cut(s) 205, 827
AlwI GGATC 5 cut(s) 116, 347, 693, 793, 806
AoxI GGCC 1 cut(s) 1009
ApeKI GCWGC 4 cut(s) 272, 282, 366, 476
ApoI RAATTY 1 cut(s) 636
ArsI GACNNNNNNTTYG 2 cut(s) 531, 563
Asp700I GAANNNNTTC 1 cut(s) 314
AspLEI GCGC 1 cut(s) 892
AspS9I GGNCC 1 cut(s) 359
AsuC2I CCSGG 1 cut(s) 325
AsuHPI GGTGA 4 cut(s) 798, 892, 1049, 1077
AvaII GGWCC 1 cut(s) 359
BamHI GGATCC 1 cut(s) 798
BanI GGYRCC 1 cut(s) 812
BanII GRGCYC 3 cut(s) 33, 529, 950
BbsI GAAGAC 2 cut(s) 786, 947
Bbv12I GWGCWC 2 cut(s) 529, 568
BbvCI CCTCAGC 1 cut(s) 170
BbvI GCAGC 4 cut(s) 269, 284, 378, 488
BccI CCATC 3 cut(s) 143, 337, 482
BcgI CGANNNNNNTGC 4 cut(s) 692, 726, 974, 1008
BciT130I CCWGG 5 cut(s) 357, 363, 517, 572, 810
BclI TGATCA 1 cut(s) 720
BcnI CCSGG 1 cut(s) 325
BcoDI GTCTC 2 cut(s) 205, 827
BcuI ACTAGT 1 cut(s) 766
BfaI CTAG 4 cut(s) 293, 452, 767, 795
BisI GCNGC 7 cut(s) 273, 283, 286, 367, 477, 506, 534
BlsI GCNGC 7 cut(s) 274, 284, 287, 368, 478, 507, 535
Bme1390I CCNGG 6 cut(s) 325, 357, 363, 517, 572, 810
Bme18I GGWCC 1 cut(s) 359
BmgT120I GGNCC 1 cut(s) 359
BmiI GGNNCC 3 cut(s) 382, 800, 814
BmrFI CCNGG 6 cut(s) 325, 357, 363, 517, 572, 810
BmrI ACTGGG 1 cut(s) 838
BmsI GCATC 2 cut(s) 43, 990
BmuI ACTGGG 1 cut(s) 838
BpiI GAAGAC 2 cut(s) 786, 947
BplI GAGNNNNNCTC 2 cut(s) 221, 253
BpmI CTGGAG 1 cut(s) 554
Bpu10I CCTNAGC 1 cut(s) 170
BpuEI CTTGAG 1 cut(s) 52
BpuMI CCSGG 1 cut(s) 325
Bsa29I ATCGAT 1 cut(s) 984
BsaHI GRCGYC 1 cut(s) 645
BsaI GGTCTC 1 cut(s) 827
BsaJI CCNNGG 3 cut(s) 515, 571, 585
BsaWI WCCGGW 1 cut(s) 864
Bsc4I CCNNNNNNNGG 5 cut(s) 229, 362, 521, 871, 1018
Bse118I RCCGGY 1 cut(s) 896
Bse1I ACTGG 4 cut(s) 375, 675, 802, 833
Bse3DI GCAATG 2 cut(s) 499, 1088
BseBI CCWGG 5 cut(s) 357, 363, 517, 572, 810
BseCI ATCGAT 1 cut(s) 984
BseDI CCNNGG 3 cut(s) 515, 571, 585
BseLI CCNNNNNNNGG 5 cut(s) 229, 362, 521, 871, 1018
BseMI GCAATG 2 cut(s) 499, 1088
BseMII CTCAG 2 cut(s) 184, 629
BseNI ACTGG 4 cut(s) 375, 675, 802, 833
BseRI GAGGAG 1 cut(s) 158
BseXI GCAGC 4 cut(s) 269, 284, 378, 488
BseYI CCCAGC 1 cut(s) 610
BsgI GTGCAG 2 cut(s) 228, 1067
Bsh1236I CGCG 1 cut(s) 890
BshFI GGCC 1 cut(s) 1011
BshNI GGYRCC 1 cut(s) 812
BshVI ATCGAT 1 cut(s) 984
BsiHKAI GWGCWC 2 cut(s) 529, 568
BsiSI CCGG 4 cut(s) 324, 559, 865, 897
BslFI GGGAC 2 cut(s) 588, 944
BslI CCNNNNNNNGG 5 cut(s) 229, 362, 521, 871, 1018
BsmAI GTCTC 2 cut(s) 205, 827
BsmFI GGGAC 2 cut(s) 588, 944
BsnI GGCC 1 cut(s) 1011
Bso31I GGTCTC 1 cut(s) 827
Bsp1286I GDGCHC 4 cut(s) 33, 529, 568, 950
Bsp19I CCATGG 1 cut(s) 585
BspACI CCGC 5 cut(s) 286, 462, 505, 534, 543
BspANI GGCC 1 cut(s) 1011
BspCNI CTCAG 2 cut(s) 183, 628
BspDI ATCGAT 1 cut(s) 984
BspFNI CGCG 1 cut(s) 890
BspLI GGNNCC 3 cut(s) 382, 800, 814
BspPI GGATC 5 cut(s) 116, 347, 693, 793, 806
BspQI GCTCTTC 1 cut(s) 21
BspT107I GGYRCC 1 cut(s) 812
BspTNI GGTCTC 1 cut(s) 827
BsrDI GCAATG 2 cut(s) 499, 1088
BsrFI RCCGGY 1 cut(s) 896
BsrI ACTGG 4 cut(s) 375, 675, 802, 833
BssAI RCCGGY 1 cut(s) 896
BssECI CCNNGG 3 cut(s) 515, 571, 585
BssNI GRCGYC 1 cut(s) 645
BssT1I CCWWGG 1 cut(s) 585
Bst2UI CCWGG 5 cut(s) 357, 363, 517, 572, 810
Bst4CI ACNGT 2 cut(s) 871, 963
Bst6I CTCTTC 3 cut(s) 21, 197, 870
BstACI GRCGYC 1 cut(s) 645
BstC8I GCNNGC 4 cut(s) 12, 290, 564, 894
BstDEI CTNAG 2 cut(s) 170, 615
BstDSI CCRYGG 1 cut(s) 585
BstENI CCTNNNNNAGG 1 cut(s) 227
BstFNI CGCG 1 cut(s) 890
BstHHI GCGC 1 cut(s) 892
BstMAI GTCTC 2 cut(s) 205, 827
BstMWI GCNNNNNNNGC 7 cut(s) 347, 448, 511, 533, 596, 605, 651
BstNI CCWGG 5 cut(s) 357, 363, 517, 572, 810
BstNSI RCATGY 1 cut(s) 731
BstSCI CCNGG 6 cut(s) 323, 355, 361, 515, 570, 808
BstUI CGCG 1 cut(s) 890
BstV1I GCAGC 4 cut(s) 269, 284, 378, 488
BstV2I GAAGAC 2 cut(s) 786, 947
BstX2I RGATCY 2 cut(s) 685, 798
BstXI CCANNNNNNTGG 2 cut(s) 758, 809
BstYI RGATCY 2 cut(s) 685, 798
Bsu15I ATCGAT 1 cut(s) 984
BsuRI GGCC 1 cut(s) 1011
BsuTUI ATCGAT 1 cut(s) 984
BtgI CCRYGG 1 cut(s) 585
BtgZI GCGATG 1 cut(s) 356
BtsI GCAGTG 1 cut(s) 708
BtsIMutI CAGTG 2 cut(s) 382, 708
Cac8I GCNNGC 4 cut(s) 12, 290, 564, 894
CfoI GCGC 1 cut(s) 892
Cfr10I RCCGGY 1 cut(s) 896
Cfr13I GGNCC 1 cut(s) 359
ClaI ATCGAT 1 cut(s) 984
CseI GACGC 1 cut(s) 634
CsiI ACCWGGT 1 cut(s) 808
Csp6I GTAC 1 cut(s) 619
CviAII CATG 7 cut(s) 96, 337, 501, 586, 622, 728, 975
CviQI GTAC 1 cut(s) 619
DdeI CTNAG 2 cut(s) 170, 615
DraIII CACNNNGTG 1 cut(s) 812
DrdI GACNNNNNNGTC 2 cut(s) 161, 841
DseDI GACNNNNNNGTC 2 cut(s) 161, 841
Eam1104I CTCTTC 3 cut(s) 21, 197, 870
EarI CTCTTC 3 cut(s) 21, 197, 870
Ecl136II GAGCTC 1 cut(s) 527
Eco130I CCWWGG 1 cut(s) 585
Eco147I AGGCCT 1 cut(s) 1011
Eco24I GRGCYC 3 cut(s) 33, 529, 950
Eco31I GGTCTC 1 cut(s) 827
Eco32I GATATC 1 cut(s) 594
Eco47I GGWCC 1 cut(s) 359
Eco53kI GAGCTC 1 cut(s) 527
Eco57I CTGAAG 1 cut(s) 730
EcoICRI GAGCTC 1 cut(s) 527
EcoNI CCTNNNNNAGG 1 cut(s) 227
EcoRII CCWGG 5 cut(s) 355, 361, 515, 570, 808
EcoRV GATATC 1 cut(s) 594
EcoT14I CCWWGG 1 cut(s) 585
EcoT38I GRGCYC 3 cut(s) 33, 529, 950
ErhI CCWWGG 1 cut(s) 585
FaeI CATG 7 cut(s) 99, 340, 504, 589, 625, 731, 978
FaqI GGGAC 2 cut(s) 588, 944
FatI CATG 7 cut(s) 95, 336, 500, 585, 621, 727, 974
FbaI TGATCA 1 cut(s) 720
FblI GTMKAC 1 cut(s) 845
Fnu4HI GCNGC 7 cut(s) 273, 283, 286, 367, 477, 506, 534
FriOI GRGCYC 3 cut(s) 33, 529, 950
Fsp4HI GCNGC 7 cut(s) 273, 283, 286, 367, 477, 506, 534
FspBI CTAG 4 cut(s) 293, 452, 767, 795
GlaI GCGC 1 cut(s) 891
GluI GCNGC 7 cut(s) 273, 283, 286, 367, 477, 506, 534
GsaI CCCAGC 1 cut(s) 614
GsuI CTGGAG 1 cut(s) 554
HaeIII GGCC 1 cut(s) 1011
HapII CCGG 4 cut(s) 324, 559, 865, 897
HgaI GACGC 1 cut(s) 634
HhaI GCGC 1 cut(s) 892
Hin1I GRCGYC 1 cut(s) 645
Hin1II CATG 7 cut(s) 99, 340, 504, 589, 625, 731, 978
Hin6I GCGC 1 cut(s) 890
HinP1I GCGC 1 cut(s) 890
HincII GTYRAC 1 cut(s) 846
HindII GTYRAC 1 cut(s) 846
HinfI GANTC 2 cut(s) 427, 782
HpaII CCGG 4 cut(s) 324, 559, 865, 897
HphI GGTGA 4 cut(s) 798, 892, 1049, 1077
Hpy166II GTNNAC 2 cut(s) 334, 846
Hpy188I TCNGA 6 cut(s) 25, 93, 154, 397, 681, 694
Hpy188III TCNNGA 3 cut(s) 112, 307, 1073
Hpy8I GTNNAC 2 cut(s) 334, 846
Hpy99I CGWCG 1 cut(s) 650
HpyAV CCTTC 2 cut(s) 290, 1001
HpyCH4III ACNGT 2 cut(s) 871, 963
HpyCH4V TGCA 5 cut(s) 14, 245, 953, 1048, 1093
HpyF10VI GCNNNNNNNGC 7 cut(s) 347, 448, 511, 533, 596, 605, 651
HpyF3I CTNAG 2 cut(s) 170, 615
Hsp92I GRCGYC 1 cut(s) 645
Hsp92II CATG 7 cut(s) 99, 340, 504, 589, 625, 731, 978
HspAI GCGC 1 cut(s) 890
Ksp22I TGATCA 1 cut(s) 720
LguI GCTCTTC 1 cut(s) 21
LmnI GCTCC 4 cut(s) 374, 380, 524, 978
Lsp1109I GCAGC 4 cut(s) 269, 284, 378, 488
LweI GCATC 2 cut(s) 43, 990
MabI ACCWGGT 1 cut(s) 808
MaeI CTAG 4 cut(s) 293, 452, 767, 795
MaeIII GTNAC 3 cut(s) 464, 740, 804
MflI RGATCY 2 cut(s) 685, 798
MhlI GDGCHC 4 cut(s) 33, 529, 568, 950
MluCI AATT 4 cut(s) 636, 665, 923, 934
MlyI GAGTC 1 cut(s) 776
MroXI GAANNNNTTC 1 cut(s) 314
MseI TTAA 3 cut(s) 39, 662, 791
MslI CAYNNNNRTG 2 cut(s) 341, 1093
MspA1I CMGCKG 2 cut(s) 479, 599
MspI CCGG 4 cut(s) 324, 559, 865, 897
MspR9I CCNGG 6 cut(s) 325, 357, 363, 517, 572, 810
MvaI CCWGG 5 cut(s) 357, 363, 517, 572, 810
MvnI CGCG 1 cut(s) 890
MwoI GCNNNNNNNGC 7 cut(s) 347, 448, 511, 533, 596, 605, 651
NciI CCSGG 1 cut(s) 325
NcoI CCATGG 1 cut(s) 585
NlaIII CATG 7 cut(s) 99, 340, 504, 589, 625, 731, 978
NlaIV GGNNCC 3 cut(s) 382, 800, 814
NmeAIII GCCGAG 1 cut(s) 739
NmuCI GTSAC 2 cut(s) 464, 804
NspI RCATGY 1 cut(s) 731
PceI AGGCCT 1 cut(s) 1011
PciI ACATGT 1 cut(s) 727
PciSI GCTCTTC 1 cut(s) 21
PdmI GAANNNNTTC 1 cut(s) 314
PfeI GAWTC 1 cut(s) 427
PkrI GCNGC 7 cut(s) 274, 284, 287, 368, 478, 507, 535
PleI GAGTC 1 cut(s) 776
PpsI GAGTC 1 cut(s) 776
PscI ACATGT 1 cut(s) 727
Psp124BI GAGCTC 1 cut(s) 529
Psp6I CCWGG 5 cut(s) 355, 361, 515, 570, 808
PspFI CCCAGC 1 cut(s) 610
PspGI CCWGG 5 cut(s) 355, 361, 515, 570, 808
PspN4I GGNNCC 3 cut(s) 382, 800, 814
PspPI GGNCC 1 cut(s) 359
PsuI RGATCY 2 cut(s) 685, 798
PvuII CAGCTG 2 cut(s) 479, 599
RsaI GTAC 1 cut(s) 620
RsaNI GTAC 1 cut(s) 619
RseI CAYNNNNRTG 2 cut(s) 341, 1093
SacI GAGCTC 1 cut(s) 529
SalI GTCGAC 1 cut(s) 844
SapI GCTCTTC 1 cut(s) 21
SaqAI TTAA 3 cut(s) 39, 662, 791
SatI GCNGC 7 cut(s) 273, 283, 286, 367, 477, 506, 534
Sau96I GGNCC 1 cut(s) 359
SchI GAGTC 1 cut(s) 776
ScrFI CCNGG 6 cut(s) 325, 357, 363, 517, 572, 810
SduI GDGCHC 4 cut(s) 33, 529, 568, 950
SexAI ACCWGGT 1 cut(s) 808
SfaNI GCATC 2 cut(s) 43, 990
SinI GGWCC 1 cut(s) 359
SmiMI CAYNNNNRTG 2 cut(s) 341, 1093
SmlI CTYRAG 1 cut(s) 67
SmoI CTYRAG 1 cut(s) 67
SpeI ACTAGT 1 cut(s) 766
Sse9I AATT 4 cut(s) 636, 665, 923, 934
SseBI AGGCCT 1 cut(s) 1011
SsiI CCGC 5 cut(s) 286, 462, 505, 534, 543
SspI AATATT 1 cut(s) 37
SspMI CTAG 4 cut(s) 293, 452, 767, 795
SstI GAGCTC 1 cut(s) 529
StuI AGGCCT 1 cut(s) 1011
StyD4I CCNGG 6 cut(s) 323, 355, 361, 515, 570, 808
StyI CCWWGG 1 cut(s) 585
TaaI ACNGT 2 cut(s) 871, 963
TaqI TCGA 5 cut(s) 648, 845, 855, 984, 1074
TasI AATT 4 cut(s) 636, 665, 923, 934
TatI WGTACW 1 cut(s) 618
TauI GCSGC 3 cut(s) 288, 508, 536
TfiI GAWTC 1 cut(s) 427
Tru1I TTAA 3 cut(s) 39, 662, 791
Tru9I TTAA 3 cut(s) 39, 662, 791
TscAI CASTG 2 cut(s) 382, 715
TseFI GTSAC 2 cut(s) 464, 804
TseI GCWGC 4 cut(s) 272, 282, 366, 476
Tsp45I GTSAC 2 cut(s) 464, 804
TspDTI ATGAA 1 cut(s) 1018
TspGWI ACGGA 2 cut(s) 539, 698
TspRI CASTG 2 cut(s) 382, 715
VpaK11BI GGWCC 1 cut(s) 359
XagI CCTNNNNNAGG 1 cut(s) 227
XapI RAATTY 1 cut(s) 636
XceI RCATGY 1 cut(s) 731
XmiI GTMKAC 1 cut(s) 845
XmnI GAANNNNTTC 1 cut(s) 314
XspI CTAG 4 cut(s) 293, 452, 767, 795
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.