Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0001519.1

Orthogroup ID

OG0007318

Physical Location & Seq

Genomic Coordinates Reverse (-)

50184 .. 50696

Gene Structure 513 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0001519.1_g000010.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 513 bp

atggcgatatcagctgtatttgccccagcacagtacatgggcgaaaagcaaatctcggacgtcgattgctttgtcttaaaattgtcagccgatcagacagatctgtctgaaagaagcgatagtactgcagagatgatcaaacatgtgatattcggttacttcagccaaagaaatggactactcgtgcacttagaagactcttacttaactaggattcaatcacctggtgcctatcctacatactgggagaccacaatgtcgactaagatcgaggattaccggacagtggaagaggtgatgatcgcccatgccggtcagacgagtgtggtcatcacacggttcggagacaatttaaagactggctccgcaatcacacggttagaagaaacatggaccatcgatgatattgctttcaatgttcaaggcctctcaatggattgcttcattcctcctaaagaagtgcagaaagatcacccgaagaaaactctggattggagatcaccattgcattga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF620

Protein Analysis

170

Amino Acids

19.26

Weight (kDa)

5.04

Isoelectric Point (pI)

36.86

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007318)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G06610
fragaria_vesca	FvH4_6g21510 FvH4_6g21510
malus_domestica	MD12G1052000.v1.1 MD14G1050800.v1.1
prunus_persica	Prupe.7G085100_v2.0.a1 Prupe.7G085100_v2.0.a1 Prupe.7G085100_v2.0.a1
pyrus_communis	pycom12g04580 pycom14g04210
rosa_chinensis	RchiOBHm_Chr3g0478731
rosa_laevigata	RLG00000023629
rosa_multiflora	Rmu_co8159618.1_g000001 Rmu_sc0001519.1_g000010 Rmu_sc0001519.1_g000011 Rmu_sc0008074.1_g000002 Rmu_sc0008074.1_g000003
rosa_roxburghii	Rroxscaffold_6G00403120
rosa_rugosa	Rorug03G0167500
rosa_samantha	Rh3AG219600 Rh3BG251400 Rh3CG248300 Rh3CG248400 Rh3DG244600
rosa_wichuraiana	Rw3G019730

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	2 cut(s)	103, 256
AatII	GACGTC	1 cut(s)	63
AccB1I	GGYRCC	1 cut(s)	227
AccI	GTMKAC	1 cut(s)	260
AciI	CCGC	1 cut(s)	366
AcuI	CTGAAG	1 cut(s)	145
AcyI	GRCGYC	1 cut(s)	60
AdeI	CACNNNGTG	1 cut(s)	227
AfaI	GTAC	2 cut(s)	35, 124
AfiI	CCNNNNNNNGG	2 cut(s)	286, 433
AflIII	ACRYGT	1 cut(s)	142
AgsI	TTSAA	3 cut(s)	218, 415, 422
AjnI	CCWGG	1 cut(s)	223
AluBI	AGCT	1 cut(s)	14
AluI	AGCT	1 cut(s)	14
Alw21I	GWGCWC	1 cut(s)	189
Alw26I	GTCTC	2 cut(s)	242, 339
Alw44I	GTGCAC	1 cut(s)	185
AoxI	GGCC	1 cut(s)	424
ApaLI	GTGCAC	1 cut(s)	185
AspS9I	GGNCC	1 cut(s)	393
AsuHPI	GGTGA	4 cut(s)	213, 307, 464, 492
AvaII	GGWCC	1 cut(s)	393
BaeGI	GKGCMC	1 cut(s)	189
BanI	GGYRCC	1 cut(s)	227
BarI	GAAGNNNNNNTAC	2 cut(s)	106, 138
BauI	CACGAG	1 cut(s)	182
BbsI	GAAGAC	1 cut(s)	201
Bbv12I	GWGCWC	1 cut(s)	189
BccI	CCATC	1 cut(s)	404
BcgI	CGANNNNNNTGC	4 cut(s)	107, 141, 389, 423
BciT130I	CCWGG	1 cut(s)	225
BclI	TGATCA	1 cut(s)	135
BcoDI	GTCTC	2 cut(s)	242, 339
BfaI	CTAG	1 cut(s)	210
BfmI	CTRYAG	1 cut(s)	126
BglII	AGATCT	1 cut(s)	100
BmcAI	AGTACT	1 cut(s)	124
Bme1390I	CCNGG	1 cut(s)	225
Bme18I	GGWCC	1 cut(s)	393
BmgT120I	GGNCC	1 cut(s)	393
BmiI	GGNNCC	2 cut(s)	229, 364
BmrFI	CCNGG	1 cut(s)	225
BmrI	ACTGGG	1 cut(s)	253
BmuI	ACTGGG	1 cut(s)	253
BpiI	GAAGAC	1 cut(s)	201
Bsa29I	ATCGAT	1 cut(s)	399
BsaHI	GRCGYC	1 cut(s)	60
BsaI	GGTCTC	1 cut(s)	242
BsaWI	WCCGGW	1 cut(s)	279
Bsc4I	CCNNNNNNNGG	2 cut(s)	286, 433
Bse118I	RCCGGY	1 cut(s)	311
Bse1I	ACTGG	2 cut(s)	248, 364
Bse3DI	GCAATG	1 cut(s)	503
BseBI	CCWGG	1 cut(s)	225
BseCI	ATCGAT	1 cut(s)	399
BseLI	CCNNNNNNNGG	2 cut(s)	286, 433
BseMI	GCAATG	1 cut(s)	503
BseNI	ACTGG	2 cut(s)	248, 364
BseSI	GKGCMC	1 cut(s)	189
BseYI	CCCAGC	1 cut(s)	25
BsgI	GTGCAG	1 cut(s)	482
BshFI	GGCC	1 cut(s)	426
BshNI	GGYRCC	1 cut(s)	227
BshVI	ATCGAT	1 cut(s)	399
BsiHKAI	GWGCWC	1 cut(s)	189
BsiSI	CCGG	2 cut(s)	280, 312
BslI	CCNNNNNNNGG	2 cut(s)	286, 433
BsmAI	GTCTC	2 cut(s)	242, 339
BsnI	GGCC	1 cut(s)	426
Bso31I	GGTCTC	1 cut(s)	242
Bsp1286I	GDGCHC	1 cut(s)	189
Bsp143I	GATC	7 cut(s)	91, 100, 135, 267, 300, 469, 497
BspACI	CCGC	1 cut(s)	366
BspANI	GGCC	1 cut(s)	426
BspDI	ATCGAT	1 cut(s)	399
BspLI	GGNNCC	2 cut(s)	229, 364
BspMAI	CTGCAG	1 cut(s)	130
BspT107I	GGYRCC	1 cut(s)	227
BspTNI	GGTCTC	1 cut(s)	242
BsrDI	GCAATG	1 cut(s)	503
BsrFI	RCCGGY	1 cut(s)	311
BsrI	ACTGG	2 cut(s)	248, 364
BssAI	RCCGGY	1 cut(s)	311
BssMI	GATC	7 cut(s)	91, 100, 135, 267, 300, 469, 497
BssNI	GRCGYC	1 cut(s)	60
BssSI	CACGAG	1 cut(s)	182
Bst2BI	CACGAG	1 cut(s)	182
Bst2UI	CCWGG	1 cut(s)	225
Bst4CI	ACNGT	4 cut(s)	33, 286, 339, 378
Bst6I	CTCTTC	1 cut(s)	285
BstACI	GRCGYC	1 cut(s)	60
BstDEI	CTNAG	2 cut(s)	190, 264
BstKTI	GATC	7 cut(s)	94, 103, 138, 270, 303, 472, 500
BstMAI	GTCTC	2 cut(s)	242, 339
BstMBI	GATC	7 cut(s)	91, 100, 135, 267, 300, 469, 497
BstMWI	GCNNNNNNNGC	2 cut(s)	11, 20
BstNI	CCWGG	1 cut(s)	225
BstNSI	RCATGY	1 cut(s)	146
BstSCI	CCNGG	1 cut(s)	223
BstSFI	CTRYAG	1 cut(s)	126
BstSLI	GKGCMC	1 cut(s)	189
BstV2I	GAAGAC	1 cut(s)	201
BstX2I	RGATCY	1 cut(s)	100
BstXI	CCANNNNNNTGG	1 cut(s)	173
BstYI	RGATCY	1 cut(s)	100
Bsu15I	ATCGAT	1 cut(s)	399
BsuRI	GGCC	1 cut(s)	426
BsuTUI	ATCGAT	1 cut(s)	399
BtsIMutI	CAGTG	1 cut(s)	291
Cfr10I	RCCGGY	1 cut(s)	311
Cfr13I	GGNCC	1 cut(s)	393
ClaI	ATCGAT	1 cut(s)	399
CsiI	ACCWGGT	1 cut(s)	223
Csp6I	GTAC	2 cut(s)	34, 123
CviAII	CATG	4 cut(s)	37, 143, 308, 390
CviJI	RGCY	5 cut(s)	14, 89, 165, 363, 426
CviKI_1	RGCY	5 cut(s)	14, 89, 165, 363, 426
CviQI	GTAC	2 cut(s)	34, 123
DdeI	CTNAG	2 cut(s)	190, 264
DpnI	GATC	7 cut(s)	93, 102, 137, 269, 302, 471, 499
DpnII	GATC	7 cut(s)	91, 100, 135, 267, 300, 469, 497
DraI	TTTAAA	1 cut(s)	354
DraIII	CACNNNGTG	1 cut(s)	227
DrdI	GACNNNNNNGTC	2 cut(s)	103, 256
DseDI	GACNNNNNNGTC	2 cut(s)	103, 256
Eam1104I	CTCTTC	1 cut(s)	285
EarI	CTCTTC	1 cut(s)	285
Eco147I	AGGCCT	1 cut(s)	426
Eco31I	GGTCTC	1 cut(s)	242
Eco32I	GATATC	1 cut(s)	9
Eco47I	GGWCC	1 cut(s)	393
Eco57I	CTGAAG	1 cut(s)	145
EcoRII	CCWGG	1 cut(s)	223
EcoRV	GATATC	1 cut(s)	9
FaeI	CATG	4 cut(s)	40, 146, 311, 393
FaiI	YATR	5 cut(s)	38, 144, 241, 309, 391
FatI	CATG	4 cut(s)	36, 142, 307, 389
FbaI	TGATCA	1 cut(s)	135
FblI	GTMKAC	1 cut(s)	260
FspBI	CTAG	1 cut(s)	210
GsaI	CCCAGC	1 cut(s)	29
HaeIII	GGCC	1 cut(s)	426
HapII	CCGG	2 cut(s)	280, 312
Hin1I	GRCGYC	1 cut(s)	60
Hin1II	CATG	4 cut(s)	40, 146, 311, 393
HincII	GTYRAC	1 cut(s)	261
HindII	GTYRAC	1 cut(s)	261
HinfI	GANTC	2 cut(s)	197, 214
HpaII	CCGG	2 cut(s)	280, 312
HphI	GGTGA	4 cut(s)	213, 307, 464, 492
Hpy166II	GTNNAC	2 cut(s)	187, 261
Hpy188I	TCNGA	5 cut(s)	58, 96, 109, 318, 344
Hpy188III	TCNNGA	1 cut(s)	488
Hpy8I	GTNNAC	2 cut(s)	187, 261
Hpy99I	CGWCG	1 cut(s)	65
HpyCH4III	ACNGT	4 cut(s)	33, 286, 339, 378
HpyCH4IV	ACGT	1 cut(s)	60
HpyCH4V	TGCA	4 cut(s)	128, 187, 463, 508
HpyF10VI	GCNNNNNNNGC	2 cut(s)	11, 20
HpyF3I	CTNAG	2 cut(s)	190, 264
HpySE526I	ACGT	1 cut(s)	60
Hsp92I	GRCGYC	1 cut(s)	60
Hsp92II	CATG	4 cut(s)	40, 146, 311, 393
Ksp22I	TGATCA	1 cut(s)	135
Kzo9I	GATC	7 cut(s)	91, 100, 135, 267, 300, 469, 497
LmnI	GCTCC	1 cut(s)	368
LpnPI	CCDG	8 cut(s)	39, 210, 229, 237, 293, 325, 345, 473
MabI	ACCWGGT	1 cut(s)	223
MaeI	CTAG	1 cut(s)	210
MaeII	ACGT	1 cut(s)	60
MaeIII	GTNAC	1 cut(s)	155
MalI	GATC	7 cut(s)	93, 102, 137, 269, 302, 471, 499
MboI	GATC	7 cut(s)	91, 100, 135, 267, 300, 469, 497
MboII	GAAGA	4 cut(s)	206, 302, 395, 490
MflI	RGATCY	1 cut(s)	100
MhlI	GDGCHC	1 cut(s)	189
MluCI	AATT	2 cut(s)	80, 349
MlyI	GAGTC	1 cut(s)	191
MnlI	CCTC	4 cut(s)	265, 286, 437, 459
MseI	TTAA	3 cut(s)	77, 206, 353
MspA1I	CMGCKG	1 cut(s)	14
MspI	CCGG	2 cut(s)	280, 312
MspR9I	CCNGG	1 cut(s)	225
MvaI	CCWGG	1 cut(s)	225
MwoI	GCNNNNNNNGC	2 cut(s)	11, 20
NdeII	GATC	7 cut(s)	91, 100, 135, 267, 300, 469, 497
NlaIII	CATG	4 cut(s)	40, 146, 311, 393
NlaIV	GGNNCC	2 cut(s)	229, 364
NspI	RCATGY	1 cut(s)	146
PceI	AGGCCT	1 cut(s)	426
PciI	ACATGT	1 cut(s)	142
PfeI	GAWTC	1 cut(s)	214
PleI	GAGTC	1 cut(s)	191
PpsI	GAGTC	1 cut(s)	191
PscI	ACATGT	1 cut(s)	142
Psp6I	CCWGG	1 cut(s)	223
PspFI	CCCAGC	1 cut(s)	25
PspGI	CCWGG	1 cut(s)	223
PspN4I	GGNNCC	2 cut(s)	229, 364
PspPI	GGNCC	1 cut(s)	393
PstI	CTGCAG	1 cut(s)	130
PsuI	RGATCY	1 cut(s)	100
PvuII	CAGCTG	1 cut(s)	14
RsaI	GTAC	2 cut(s)	35, 124
RsaNI	GTAC	2 cut(s)	34, 123
SalI	GTCGAC	1 cut(s)	259
SaqAI	TTAA	3 cut(s)	77, 206, 353
Sau3AI	GATC	7 cut(s)	91, 100, 135, 267, 300, 469, 497
Sau96I	GGNCC	1 cut(s)	393
ScaI	AGTACT	1 cut(s)	124
SchI	GAGTC	1 cut(s)	191
ScrFI	CCNGG	1 cut(s)	225
SduI	GDGCHC	1 cut(s)	189
SetI	ASST	4 cut(s)	16, 63, 226, 297
SexAI	ACCWGGT	1 cut(s)	223
SfcI	CTRYAG	1 cut(s)	126
SinI	GGWCC	1 cut(s)	393
Sse9I	AATT	2 cut(s)	80, 349
SseBI	AGGCCT	1 cut(s)	426
SsiI	CCGC	1 cut(s)	366
SspMI	CTAG	1 cut(s)	210
StuI	AGGCCT	1 cut(s)	426
StyD4I	CCNGG	1 cut(s)	223
TaaI	ACNGT	4 cut(s)	33, 286, 339, 378
TaiI	ACGT	1 cut(s)	63
TaqI	TCGA	4 cut(s)	63, 260, 270, 399
TasI	AATT	2 cut(s)	80, 349
TatI	WGTACW	2 cut(s)	33, 122
TfiI	GAWTC	1 cut(s)	214
Tru1I	TTAA	3 cut(s)	77, 206, 353
Tru9I	TTAA	3 cut(s)	77, 206, 353
TscAI	CASTG	1 cut(s)	291
TspDTI	ATGAA	1 cut(s)	433
TspRI	CASTG	1 cut(s)	291
VneI	GTGCAC	1 cut(s)	185
VpaK11BI	GGWCC	1 cut(s)	393
XceI	RCATGY	1 cut(s)	146
XmiI	GTMKAC	1 cut(s)	260
XspI	CTAG	1 cut(s)	210
ZraI	GACGTC	1 cut(s)	61
ZrmI	AGTACT	1 cut(s)	124

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.