Rh3CG248400

Protein of unknown function (DUF620)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr3C
OG0007318
Physical Location & Seq
Forward (+)
24055015 .. 24055527
513 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh3CG248400.1

Sequence Viewer

Length: 513 bp
ATGGCGATATCAGCTGTATTTGCCCCAGCACAGTACATGGGCGAAAAGCAAATCTCGGACGTCGATTGCTTTGTCTTAAAATTGTCAGCCGATCAGACAGATCTGTCTGAAAGAAGCGATAGTACTGCAGAGATGATCAAACATGTGATATTCGGTTACTTCAGCCAAAGAAATGGACTACTCGTGCACTTAGAAGACTCTTACTTAACTAGGATTCAATCACCTGGTGCCTATCCTACATACTGGGAGACCACAATGTCGACTAAGATCGAGGATTACCGGACAGTGGAAGAGGTGATGATCGCCCATGCCGGTCAGACGAGTGTGGTCATCACACGATTCGGAGACAATTTAAAGACTGGCTCCGCAATCACACGGTTAGAAGAAACATGGACCATTGATGATATTGCTTTCAATGTTCAAGGCCTCTCAATGGATTGCTTCATTCCTCCTAAAGAAGTGCAGAAAGATCACCCGAAGAAAACTCTGGATTGGAGATCACCATTGCATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF620

Protein Analysis

170

Amino Acids

19.26

Weight (kDa)

5.04

Isoelectric Point (pI)

36.86

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF620 PF04788 3 - 151 1.5e-65 Protein of unknown function (DUF620)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 2 cut(s) 103, 256
AatII GACGTC 1 cut(s) 63
AccB1I GGYRCC 1 cut(s) 227
AccI GTMKAC 1 cut(s) 260
AciI CCGC 1 cut(s) 366
AcuI CTGAAG 1 cut(s) 145
AcyI GRCGYC 1 cut(s) 60
AdeI CACNNNGTG 1 cut(s) 227
AfaI GTAC 2 cut(s) 35, 124
AfiI CCNNNNNNNGG 2 cut(s) 286, 433
AflIII ACRYGT 1 cut(s) 142
AgsI TTSAA 3 cut(s) 218, 415, 422
AjnI CCWGG 1 cut(s) 223
AluBI AGCT 1 cut(s) 14
AluI AGCT 1 cut(s) 14
Alw21I GWGCWC 1 cut(s) 189
Alw26I GTCTC 2 cut(s) 242, 339
Alw44I GTGCAC 1 cut(s) 185
AoxI GGCC 1 cut(s) 424
ApaLI GTGCAC 1 cut(s) 185
AspS9I GGNCC 1 cut(s) 393
AsuHPI GGTGA 4 cut(s) 213, 307, 464, 492
AvaII GGWCC 1 cut(s) 393
BaeGI GKGCMC 1 cut(s) 189
BanI GGYRCC 1 cut(s) 227
BarI GAAGNNNNNNTAC 2 cut(s) 106, 138
BauI CACGAG 1 cut(s) 182
BbsI GAAGAC 1 cut(s) 201
Bbv12I GWGCWC 1 cut(s) 189
BcgI CGANNNNNNTGC 2 cut(s) 107, 141
BciT130I CCWGG 1 cut(s) 225
BclI TGATCA 1 cut(s) 135
BcoDI GTCTC 2 cut(s) 242, 339
BfaI CTAG 1 cut(s) 210
BfmI CTRYAG 1 cut(s) 126
BglII AGATCT 1 cut(s) 100
BmcAI AGTACT 1 cut(s) 124
Bme1390I CCNGG 1 cut(s) 225
Bme18I GGWCC 1 cut(s) 393
BmgT120I GGNCC 1 cut(s) 393
BmiI GGNNCC 2 cut(s) 229, 364
BmrFI CCNGG 1 cut(s) 225
BmrI ACTGGG 1 cut(s) 253
BmuI ACTGGG 1 cut(s) 253
BpiI GAAGAC 1 cut(s) 201
BsaHI GRCGYC 1 cut(s) 60
BsaI GGTCTC 1 cut(s) 242
BsaWI WCCGGW 1 cut(s) 279
Bsc4I CCNNNNNNNGG 2 cut(s) 286, 433
Bse118I RCCGGY 1 cut(s) 311
Bse1I ACTGG 2 cut(s) 248, 364
Bse3DI GCAATG 1 cut(s) 503
BseBI CCWGG 1 cut(s) 225
BseLI CCNNNNNNNGG 2 cut(s) 286, 433
BseMI GCAATG 1 cut(s) 503
BseNI ACTGG 2 cut(s) 248, 364
BseSI GKGCMC 1 cut(s) 189
BseYI CCCAGC 1 cut(s) 25
BsgI GTGCAG 1 cut(s) 482
BshFI GGCC 1 cut(s) 426
BshNI GGYRCC 1 cut(s) 227
BsiHKAI GWGCWC 1 cut(s) 189
BsiSI CCGG 2 cut(s) 280, 312
BslI CCNNNNNNNGG 2 cut(s) 286, 433
BsmAI GTCTC 2 cut(s) 242, 339
BsnI GGCC 1 cut(s) 426
Bso31I GGTCTC 1 cut(s) 242
Bsp1286I GDGCHC 1 cut(s) 189
Bsp143I GATC 7 cut(s) 91, 100, 135, 267, 300, 469, 497
BspACI CCGC 1 cut(s) 366
BspANI GGCC 1 cut(s) 426
BspLI GGNNCC 2 cut(s) 229, 364
BspMAI CTGCAG 1 cut(s) 130
BspT107I GGYRCC 1 cut(s) 227
BspTNI GGTCTC 1 cut(s) 242
BsrDI GCAATG 1 cut(s) 503
BsrFI RCCGGY 1 cut(s) 311
BsrI ACTGG 2 cut(s) 248, 364
BssAI RCCGGY 1 cut(s) 311
BssMI GATC 7 cut(s) 91, 100, 135, 267, 300, 469, 497
BssNI GRCGYC 1 cut(s) 60
BssSI CACGAG 1 cut(s) 182
Bst2BI CACGAG 1 cut(s) 182
Bst2UI CCWGG 1 cut(s) 225
Bst4CI ACNGT 3 cut(s) 33, 286, 378
Bst6I CTCTTC 1 cut(s) 285
BstACI GRCGYC 1 cut(s) 60
BstDEI CTNAG 2 cut(s) 190, 264
BstKTI GATC 7 cut(s) 94, 103, 138, 270, 303, 472, 500
BstMAI GTCTC 2 cut(s) 242, 339
BstMBI GATC 7 cut(s) 91, 100, 135, 267, 300, 469, 497
BstMWI GCNNNNNNNGC 2 cut(s) 11, 20
BstNI CCWGG 1 cut(s) 225
BstNSI RCATGY 1 cut(s) 146
BstSCI CCNGG 1 cut(s) 223
BstSFI CTRYAG 1 cut(s) 126
BstSLI GKGCMC 1 cut(s) 189
BstV2I GAAGAC 1 cut(s) 201
BstX2I RGATCY 1 cut(s) 100
BstXI CCANNNNNNTGG 1 cut(s) 173
BstYI RGATCY 1 cut(s) 100
BsuRI GGCC 1 cut(s) 426
BtsIMutI CAGTG 1 cut(s) 291
Cfr10I RCCGGY 1 cut(s) 311
Cfr13I GGNCC 1 cut(s) 393
CsiI ACCWGGT 1 cut(s) 223
Csp6I GTAC 2 cut(s) 34, 123
CviAII CATG 4 cut(s) 37, 143, 308, 390
CviJI RGCY 5 cut(s) 14, 89, 165, 363, 426
CviKI_1 RGCY 5 cut(s) 14, 89, 165, 363, 426
CviQI GTAC 2 cut(s) 34, 123
DdeI CTNAG 2 cut(s) 190, 264
DpnI GATC 7 cut(s) 93, 102, 137, 269, 302, 471, 499
DpnII GATC 7 cut(s) 91, 100, 135, 267, 300, 469, 497
DraI TTTAAA 1 cut(s) 354
DraIII CACNNNGTG 1 cut(s) 227
DrdI GACNNNNNNGTC 2 cut(s) 103, 256
DseDI GACNNNNNNGTC 2 cut(s) 103, 256
Eam1104I CTCTTC 1 cut(s) 285
EarI CTCTTC 1 cut(s) 285
Eco147I AGGCCT 1 cut(s) 426
Eco31I GGTCTC 1 cut(s) 242
Eco32I GATATC 1 cut(s) 9
Eco47I GGWCC 1 cut(s) 393
Eco57I CTGAAG 1 cut(s) 145
EcoRII CCWGG 1 cut(s) 223
EcoRV GATATC 1 cut(s) 9
FaeI CATG 4 cut(s) 40, 146, 311, 393
FaiI YATR 5 cut(s) 38, 144, 241, 309, 391
FatI CATG 4 cut(s) 36, 142, 307, 389
FbaI TGATCA 1 cut(s) 135
FblI GTMKAC 1 cut(s) 260
FspBI CTAG 1 cut(s) 210
GsaI CCCAGC 1 cut(s) 29
HaeIII GGCC 1 cut(s) 426
HapII CCGG 2 cut(s) 280, 312
Hin1I GRCGYC 1 cut(s) 60
Hin1II CATG 4 cut(s) 40, 146, 311, 393
HincII GTYRAC 1 cut(s) 261
HindII GTYRAC 1 cut(s) 261
HinfI GANTC 3 cut(s) 197, 214, 339
HpaII CCGG 2 cut(s) 280, 312
HphI GGTGA 4 cut(s) 213, 307, 464, 492
Hpy166II GTNNAC 2 cut(s) 187, 261
Hpy188I TCNGA 5 cut(s) 58, 96, 109, 318, 344
Hpy188III TCNNGA 1 cut(s) 488
Hpy8I GTNNAC 2 cut(s) 187, 261
Hpy99I CGWCG 1 cut(s) 65
HpyCH4III ACNGT 3 cut(s) 33, 286, 378
HpyCH4IV ACGT 1 cut(s) 60
HpyCH4V TGCA 4 cut(s) 128, 187, 463, 508
HpyF10VI GCNNNNNNNGC 2 cut(s) 11, 20
HpyF3I CTNAG 2 cut(s) 190, 264
HpySE526I ACGT 1 cut(s) 60
Hsp92I GRCGYC 1 cut(s) 60
Hsp92II CATG 4 cut(s) 40, 146, 311, 393
Ksp22I TGATCA 1 cut(s) 135
Kzo9I GATC 7 cut(s) 91, 100, 135, 267, 300, 469, 497
LmnI GCTCC 1 cut(s) 368
LpnPI CCDG 8 cut(s) 39, 210, 229, 237, 293, 325, 345, 473
MabI ACCWGGT 1 cut(s) 223
MaeI CTAG 1 cut(s) 210
MaeII ACGT 1 cut(s) 60
MaeIII GTNAC 1 cut(s) 155
MalI GATC 7 cut(s) 93, 102, 137, 269, 302, 471, 499
MboI GATC 7 cut(s) 91, 100, 135, 267, 300, 469, 497
MboII GAAGA 4 cut(s) 206, 302, 395, 490
MflI RGATCY 1 cut(s) 100
MhlI GDGCHC 1 cut(s) 189
MluCI AATT 2 cut(s) 80, 349
MlyI GAGTC 1 cut(s) 191
MnlI CCTC 4 cut(s) 265, 286, 437, 459
MseI TTAA 3 cut(s) 77, 206, 353
MspA1I CMGCKG 1 cut(s) 14
MspI CCGG 2 cut(s) 280, 312
MspR9I CCNGG 1 cut(s) 225
MvaI CCWGG 1 cut(s) 225
MwoI GCNNNNNNNGC 2 cut(s) 11, 20
NdeII GATC 7 cut(s) 91, 100, 135, 267, 300, 469, 497
NlaIII CATG 4 cut(s) 40, 146, 311, 393
NlaIV GGNNCC 2 cut(s) 229, 364
NspI RCATGY 1 cut(s) 146
PceI AGGCCT 1 cut(s) 426
PciI ACATGT 1 cut(s) 142
PfeI GAWTC 2 cut(s) 214, 339
PleI GAGTC 1 cut(s) 191
PpsI GAGTC 1 cut(s) 191
PscI ACATGT 1 cut(s) 142
Psp6I CCWGG 1 cut(s) 223
PspFI CCCAGC 1 cut(s) 25
PspGI CCWGG 1 cut(s) 223
PspN4I GGNNCC 2 cut(s) 229, 364
PspPI GGNCC 1 cut(s) 393
PstI CTGCAG 1 cut(s) 130
PsuI RGATCY 1 cut(s) 100
PvuII CAGCTG 1 cut(s) 14
RsaI GTAC 2 cut(s) 35, 124
RsaNI GTAC 2 cut(s) 34, 123
SalI GTCGAC 1 cut(s) 259
SaqAI TTAA 3 cut(s) 77, 206, 353
Sau3AI GATC 7 cut(s) 91, 100, 135, 267, 300, 469, 497
Sau96I GGNCC 1 cut(s) 393
ScaI AGTACT 1 cut(s) 124
SchI GAGTC 1 cut(s) 191
ScrFI CCNGG 1 cut(s) 225
SduI GDGCHC 1 cut(s) 189
SetI ASST 4 cut(s) 16, 63, 226, 297
SexAI ACCWGGT 1 cut(s) 223
SfcI CTRYAG 1 cut(s) 126
SinI GGWCC 1 cut(s) 393
Sse9I AATT 2 cut(s) 80, 349
SseBI AGGCCT 1 cut(s) 426
SsiI CCGC 1 cut(s) 366
SspMI CTAG 1 cut(s) 210
StuI AGGCCT 1 cut(s) 426
StyD4I CCNGG 1 cut(s) 223
TaaI ACNGT 3 cut(s) 33, 286, 378
TaiI ACGT 1 cut(s) 63
TaqI TCGA 3 cut(s) 63, 260, 270
TasI AATT 2 cut(s) 80, 349
TatI WGTACW 2 cut(s) 33, 122
TfiI GAWTC 2 cut(s) 214, 339
Tru1I TTAA 3 cut(s) 77, 206, 353
Tru9I TTAA 3 cut(s) 77, 206, 353
TscAI CASTG 1 cut(s) 291
TspDTI ATGAA 1 cut(s) 433
TspRI CASTG 1 cut(s) 291
VneI GTGCAC 1 cut(s) 185
VpaK11BI GGWCC 1 cut(s) 393
XceI RCATGY 1 cut(s) 146
XmiI GTMKAC 1 cut(s) 260
XspI CTAG 1 cut(s) 210
ZraI GACGTC 1 cut(s) 61
ZrmI AGTACT 1 cut(s) 124
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.