Rh3DG244600

Protein of unknown function (DUF620)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr3D
OG0007318
Physical Location & Seq
Forward (+)
23875626 .. 23879214
3589 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh3DG244600.1

Sequence Viewer

Length: 1101 bp
ATGGGTCGTCTTGCACCATTATCAGAAGAACCCAATATTAATGAAGAAGAAGATGCCACAAATCGCTCAAGCAAAGGCATAATGAGGAGTACTCAGACATGGAGGAAATGGATCAAGACCCACATCACCTCCCTTGCCATCTTCAACAAGAGGTCTGACTTCAAGGTCCTCCTCAGCGTTCTGGGTTGCCCTCTCTTCCCTGTCTCTGCCCTCCCCAAACTGCCCCTCAATGAGGTCTCCTCTACTGCACAATACATAATACAACACTTCACAGCAGCCACAGGCTGCCGCAAGCTAGAAGGTAGAGTCAAGAACATTTTTGCAACCGGAAAAGTGAACATGGCGATGGCGGATGATCCCGCTCCTGGCAGCTCCACCAGTGGAGCCACCACCATATCAGAAAAAGGGTGCTTTGTAATGTGGCAGATGATTCCCAATAAGTGGCTGATTGAGCTAGTTCTGGGTGGTCACAAGGTAGCAGCTGGTAGTGATGGCAATGTGGCATGGCGCCACACGCCGTGGCTTGGGGCGCATGCTGCCAAGGGCGGTGTTCGTCCTCTCCGGCGAGCACTCCAGGGACTAGACCCCATGGCGATATCAGCTGTATTTGCCCCAGCACAGTACATGGGCGAAAAGCAAATCTCGGACGTCGATTGCTTTGTCTTAAAATTGTCAGCCGATCAGACAGATCTGTCTGAAAGAAGCGATAGTACTGCAGAGATGATCAAACATGTGATATTCGGTTACTTCAGCCAAAGAAATGGACTACTCGTGCACTTAGAAGACTCTTACTTAACTAGGATTCAATCACCTGGTGCCTATCCTACATACTGGGAGACCACAATGTCGACTAAGATCGAGGATTACCGGACAGTGGAAGAGGTGATGATCGCCCATGCCGGTCAGACGAGTGTGGTCATCACACGGTTCGGAGACAATTTAAAGACTGGCTCCGCAATCACACGGTTAGAAGAAACATGGACCATCGATGATATTGCTTTCAATGTGCAAGGCCTCTCAATGGATTGCTTCATTCCTCCTAAAGAAGTGCAGAAAGATCACCCGAAGAAAACTCTGGATTGGAGATCACCATTGCATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF620

Protein Analysis

366

Amino Acids

40.58

Weight (kDa)

7.69

Isoelectric Point (pI)

43.17

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF620 PF04788 106 - 347 6e-106 Protein of unknown function (DUF620)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 3 cut(s) 164, 691, 844
AatII GACGTC 1 cut(s) 651
AccB1I GGYRCC 2 cut(s) 507, 815
AccB7I CCANNNNNTGG 1 cut(s) 441
AccBSI CCGCTC 1 cut(s) 362
AccI GTMKAC 1 cut(s) 848
AciI CCGC 5 cut(s) 289, 350, 360, 546, 954
AclWI GGATC 2 cut(s) 119, 350
AcuI CTGAAG 1 cut(s) 733
AcyI GRCGYC 2 cut(s) 508, 648
AdeI CACNNNGTG 2 cut(s) 519, 815
AfaI GTAC 3 cut(s) 91, 623, 712
AfiI CCNNNNNNNGG 6 cut(s) 232, 365, 441, 524, 874, 1021
AflIII ACRYGT 1 cut(s) 730
AgsI TTSAA 4 cut(s) 145, 163, 806, 1003
AjnI CCWGG 3 cut(s) 364, 573, 811
AluBI AGCT 5 cut(s) 295, 372, 454, 482, 602
AluI AGCT 5 cut(s) 295, 372, 454, 482, 602
Alw21I GWGCWC 2 cut(s) 571, 777
Alw26I GTCTC 4 cut(s) 208, 241, 830, 927
Alw44I GTGCAC 1 cut(s) 773
AlwI GGATC 2 cut(s) 119, 350
AoxI GGCC 1 cut(s) 1012
ApaLI GTGCAC 1 cut(s) 773
ApeKI GCWGC 5 cut(s) 275, 285, 369, 479, 536
AseI ATTAAT 1 cut(s) 39
AspLEI GCGC 2 cut(s) 510, 532
AspS9I GGNCC 2 cut(s) 166, 981
AsuHPI GGTGA 5 cut(s) 118, 801, 895, 1052, 1080
AvaII GGWCC 2 cut(s) 166, 981
BaeGI GKGCMC 1 cut(s) 777
BanI GGYRCC 2 cut(s) 507, 815
BarI GAAGNNNNNNTAC 2 cut(s) 694, 726
BauI CACGAG 1 cut(s) 770
BbsI GAAGAC 1 cut(s) 789
Bbv12I GWGCWC 2 cut(s) 571, 777
BbvCI CCTCAGC 1 cut(s) 173
BbvI GCAGC 5 cut(s) 272, 287, 381, 491, 523
BccI CCATC 4 cut(s) 146, 340, 485, 992
BceAI ACGGC 1 cut(s) 502
BcgI CGANNNNNNTGC 4 cut(s) 695, 729, 977, 1011
BciT130I CCWGG 3 cut(s) 366, 575, 813
BclI TGATCA 1 cut(s) 723
BcoDI GTCTC 4 cut(s) 208, 241, 830, 927
BfaI CTAG 4 cut(s) 296, 455, 581, 798
BfmI CTRYAG 1 cut(s) 714
BfoI RGCGCY 1 cut(s) 511
BglII AGATCT 1 cut(s) 688
BisI GCNGC 6 cut(s) 276, 286, 289, 370, 480, 537
BlsI GCNGC 6 cut(s) 277, 287, 290, 371, 481, 538
BmcAI AGTACT 2 cut(s) 91, 712
Bme1390I CCNGG 3 cut(s) 366, 575, 813
Bme18I GGWCC 2 cut(s) 166, 981
BmgT120I GGNCC 2 cut(s) 166, 981
BmiI GGNNCC 4 cut(s) 385, 509, 817, 952
BmrFI CCNGG 3 cut(s) 366, 575, 813
BmrI ACTGGG 1 cut(s) 841
BmsI GCATC 1 cut(s) 43
BmuI ACTGGG 1 cut(s) 841
BpiI GAAGAC 1 cut(s) 789
BplI GAGNNNNNCTC 4 cut(s) 76, 108, 224, 256
BpmI CTGGAG 1 cut(s) 557
Bpu10I CCTNAGC 1 cut(s) 173
BpuEI CTTGAG 1 cut(s) 52
Bsa29I ATCGAT 1 cut(s) 987
BsaHI GRCGYC 2 cut(s) 508, 648
BsaI GGTCTC 2 cut(s) 241, 830
BsaJI CCNNGG 4 cut(s) 518, 540, 574, 588
BsaWI WCCGGW 2 cut(s) 326, 867
BsaXI ACNNNNNCTCC 2 cut(s) 113, 143
Bsc4I CCNNNNNNNGG 6 cut(s) 232, 365, 441, 524, 874, 1021
Bse118I RCCGGY 1 cut(s) 899
Bse1I ACTGG 3 cut(s) 378, 836, 952
Bse3DI GCAATG 2 cut(s) 502, 1091
BseBI CCWGG 3 cut(s) 366, 575, 813
BseCI ATCGAT 1 cut(s) 987
BseDI CCNNGG 4 cut(s) 518, 540, 574, 588
BseGI GGATG 1 cut(s) 358
BseLI CCNNNNNNNGG 6 cut(s) 232, 365, 441, 524, 874, 1021
BseMI GCAATG 2 cut(s) 502, 1091
BseMII CTCAG 2 cut(s) 107, 187
BseNI ACTGG 3 cut(s) 378, 836, 952
BseRI GAGGAG 3 cut(s) 100, 161, 229
BseSI GKGCMC 1 cut(s) 777
BseXI GCAGC 5 cut(s) 272, 287, 381, 491, 523
BseYI CCCAGC 1 cut(s) 613
BsgI GTGCAG 2 cut(s) 231, 1070
BshFI GGCC 1 cut(s) 1014
BshNI GGYRCC 2 cut(s) 507, 815
BshVI ATCGAT 1 cut(s) 987
BsiHKAI GWGCWC 2 cut(s) 571, 777
BsiSI CCGG 4 cut(s) 327, 562, 868, 900
BslFI GGGAC 1 cut(s) 591
BslI CCNNNNNNNGG 6 cut(s) 232, 365, 441, 524, 874, 1021
BsmAI GTCTC 4 cut(s) 208, 241, 830, 927
BsmFI GGGAC 1 cut(s) 591
BsnI GGCC 1 cut(s) 1014
Bso31I GGTCTC 2 cut(s) 241, 830
Bsp1286I GDGCHC 2 cut(s) 571, 777
Bsp143I GATC 9 cut(s) 111, 355, 679, 688, 723, 855, 888, 1057, 1085
Bsp19I CCATGG 1 cut(s) 588
BspACI CCGC 5 cut(s) 289, 350, 360, 546, 954
BspANI GGCC 1 cut(s) 1014
BspCNI CTCAG 2 cut(s) 106, 186
BspDI ATCGAT 1 cut(s) 987
BspLI GGNNCC 4 cut(s) 385, 509, 817, 952
BspMAI CTGCAG 1 cut(s) 718
BspPI GGATC 2 cut(s) 119, 350
BspT107I GGYRCC 2 cut(s) 507, 815
BspTNI GGTCTC 2 cut(s) 241, 830
BsrBI CCGCTC 1 cut(s) 362
BsrDI GCAATG 2 cut(s) 502, 1091
BsrFI RCCGGY 1 cut(s) 899
BsrI ACTGG 3 cut(s) 378, 836, 952
BssAI RCCGGY 1 cut(s) 899
BssECI CCNNGG 4 cut(s) 518, 540, 574, 588
BssMI GATC 9 cut(s) 111, 355, 679, 688, 723, 855, 888, 1057, 1085
BssNI GRCGYC 2 cut(s) 508, 648
BssSI CACGAG 1 cut(s) 770
BssT1I CCWWGG 2 cut(s) 540, 588
Bst2BI CACGAG 1 cut(s) 770
Bst2UI CCWGG 3 cut(s) 366, 575, 813
Bst4CI ACNGT 4 cut(s) 621, 874, 927, 966
Bst6I CTCTTC 2 cut(s) 200, 873
BstACI GRCGYC 2 cut(s) 508, 648
BstC8I GCNNGC 3 cut(s) 293, 534, 567
BstDEI CTNAG 4 cut(s) 93, 173, 778, 852
BstDSI CCRYGG 2 cut(s) 518, 588
BstENI CCTNNNNNAGG 1 cut(s) 230
BstF5I GGATG 1 cut(s) 358
BstH2I RGCGCY 1 cut(s) 511
BstHHI GCGC 2 cut(s) 510, 532
BstKTI GATC 9 cut(s) 114, 358, 682, 691, 726, 858, 891, 1060, 1088
BstMAI GTCTC 4 cut(s) 208, 241, 830, 927
BstMBI GATC 9 cut(s) 111, 355, 679, 688, 723, 855, 888, 1057, 1085
BstMWI GCNNNNNNNGC 6 cut(s) 451, 514, 529, 536, 599, 608
BstNI CCWGG 3 cut(s) 366, 575, 813
BstNSI RCATGY 2 cut(s) 536, 734
BstSCI CCNGG 3 cut(s) 364, 573, 811
BstSFI CTRYAG 1 cut(s) 714
BstSLI GKGCMC 1 cut(s) 777
BstV1I GCAGC 5 cut(s) 272, 287, 381, 491, 523
BstV2I GAAGAC 1 cut(s) 789
BstX2I RGATCY 1 cut(s) 688
BstXI CCANNNNNNTGG 1 cut(s) 761
BstYI RGATCY 1 cut(s) 688
Bsu15I ATCGAT 1 cut(s) 987
BsuRI GGCC 1 cut(s) 1014
BsuTUI ATCGAT 1 cut(s) 987
BtgI CCRYGG 2 cut(s) 518, 588
BtgZI GCGATG 1 cut(s) 359
BtsCI GGATG 1 cut(s) 358
BtsIMutI CAGTG 2 cut(s) 385, 879
Cac8I GCNNGC 3 cut(s) 293, 534, 567
CfoI GCGC 2 cut(s) 510, 532
Cfr10I RCCGGY 1 cut(s) 899
Cfr13I GGNCC 2 cut(s) 166, 981
ClaI ATCGAT 1 cut(s) 987
CsiI ACCWGGT 1 cut(s) 811
Csp6I GTAC 3 cut(s) 90, 622, 711
CviAII CATG 9 cut(s) 99, 340, 504, 533, 589, 625, 731, 896, 978
CviQI GTAC 3 cut(s) 90, 622, 711
DdeI CTNAG 4 cut(s) 93, 173, 778, 852
DinI GGCGCC 1 cut(s) 509
DpnI GATC 9 cut(s) 113, 357, 681, 690, 725, 857, 890, 1059, 1087
DpnII GATC 9 cut(s) 111, 355, 679, 688, 723, 855, 888, 1057, 1085
DraI TTTAAA 1 cut(s) 942
DraIII CACNNNGTG 2 cut(s) 519, 815
DrdI GACNNNNNNGTC 3 cut(s) 164, 691, 844
DseDI GACNNNNNNGTC 3 cut(s) 164, 691, 844
Eam1104I CTCTTC 2 cut(s) 200, 873
EarI CTCTTC 2 cut(s) 200, 873
EciI GGCGGA 1 cut(s) 365
Eco130I CCWWGG 2 cut(s) 540, 588
Eco147I AGGCCT 1 cut(s) 1014
Eco31I GGTCTC 2 cut(s) 241, 830
Eco32I GATATC 1 cut(s) 597
Eco47I GGWCC 2 cut(s) 166, 981
Eco57I CTGAAG 1 cut(s) 733
EcoNI CCTNNNNNAGG 1 cut(s) 230
EcoO109I RGGNCCY 1 cut(s) 166
EcoRII CCWGG 3 cut(s) 364, 573, 811
EcoRV GATATC 1 cut(s) 597
EcoT14I CCWWGG 2 cut(s) 540, 588
EgeI GGCGCC 1 cut(s) 509
EheI GGCGCC 1 cut(s) 509
ErhI CCWWGG 2 cut(s) 540, 588
FaeI CATG 9 cut(s) 102, 343, 507, 536, 592, 628, 734, 899, 981
FaqI GGGAC 1 cut(s) 591
FatI CATG 9 cut(s) 98, 339, 503, 532, 588, 624, 730, 895, 977
FauI CCCGC 1 cut(s) 367
FbaI TGATCA 1 cut(s) 723
FblI GTMKAC 1 cut(s) 848
Fnu4HI GCNGC 6 cut(s) 276, 286, 289, 370, 480, 537
FokI GGATG 1 cut(s) 365
Fsp4HI GCNGC 6 cut(s) 276, 286, 289, 370, 480, 537
FspBI CTAG 4 cut(s) 296, 455, 581, 798
GlaI GCGC 2 cut(s) 509, 531
GluI GCNGC 6 cut(s) 276, 286, 289, 370, 480, 537
GsaI CCCAGC 1 cut(s) 617
GsuI CTGGAG 1 cut(s) 557
HaeII RGCGCY 1 cut(s) 511
HaeIII GGCC 1 cut(s) 1014
HapII CCGG 4 cut(s) 327, 562, 868, 900
HhaI GCGC 2 cut(s) 510, 532
Hin1I GRCGYC 2 cut(s) 508, 648
Hin1II CATG 9 cut(s) 102, 343, 507, 536, 592, 628, 734, 899, 981
Hin6I GCGC 2 cut(s) 508, 530
HinP1I GCGC 2 cut(s) 508, 530
HincII GTYRAC 1 cut(s) 849
HindII GTYRAC 1 cut(s) 849
HinfI GANTC 4 cut(s) 306, 430, 785, 802
HpaII CCGG 4 cut(s) 327, 562, 868, 900
HphI GGTGA 5 cut(s) 118, 801, 895, 1052, 1080
Hpy166II GTNNAC 3 cut(s) 337, 775, 849
Hpy188I TCNGA 9 cut(s) 25, 96, 157, 400, 646, 684, 697, 906, 932
Hpy188III TCNNGA 3 cut(s) 115, 310, 1076
Hpy8I GTNNAC 3 cut(s) 337, 775, 849
Hpy99I CGWCG 1 cut(s) 653
HpyAV CCTTC 1 cut(s) 293
HpyCH4III ACNGT 4 cut(s) 621, 874, 927, 966
HpyCH4IV ACGT 1 cut(s) 648
HpyCH4V TGCA 8 cut(s) 14, 248, 323, 716, 775, 1009, 1051, 1096
HpyF10VI GCNNNNNNNGC 6 cut(s) 451, 514, 529, 536, 599, 608
HpyF3I CTNAG 4 cut(s) 93, 173, 778, 852
HpySE526I ACGT 1 cut(s) 648
Hsp92I GRCGYC 2 cut(s) 508, 648
Hsp92II CATG 9 cut(s) 102, 343, 507, 536, 592, 628, 734, 899, 981
HspAI GCGC 2 cut(s) 508, 530
KasI GGCGCC 1 cut(s) 507
Ksp22I TGATCA 1 cut(s) 723
Kzo9I GATC 9 cut(s) 111, 355, 679, 688, 723, 855, 888, 1057, 1085
LmnI GCTCC 4 cut(s) 367, 377, 383, 956
Lsp1109I GCAGC 5 cut(s) 272, 287, 381, 491, 523
LweI GCATC 1 cut(s) 43
MabI ACCWGGT 1 cut(s) 811
MaeI CTAG 4 cut(s) 296, 455, 581, 798
MaeII ACGT 1 cut(s) 648
MaeIII GTNAC 2 cut(s) 467, 743
MalI GATC 9 cut(s) 113, 357, 681, 690, 725, 857, 890, 1059, 1087
MbiI CCGCTC 1 cut(s) 362
MboI GATC 9 cut(s) 111, 355, 679, 688, 723, 855, 888, 1057, 1085
MflI RGATCY 1 cut(s) 688
MhlI GDGCHC 2 cut(s) 571, 777
MluCI AATT 2 cut(s) 668, 937
Mly113I GGCGCC 1 cut(s) 508
MlyI GAGTC 2 cut(s) 315, 779
MseI TTAA 4 cut(s) 39, 665, 794, 941
MslI CAYNNNNRTG 1 cut(s) 344
MspA1I CMGCKG 2 cut(s) 482, 602
MspI CCGG 4 cut(s) 327, 562, 868, 900
MspR9I CCNGG 3 cut(s) 366, 575, 813
MvaI CCWGG 3 cut(s) 366, 575, 813
MwoI GCNNNNNNNGC 6 cut(s) 451, 514, 529, 536, 599, 608
NarI GGCGCC 1 cut(s) 508
NcoI CCATGG 1 cut(s) 588
NdeII GATC 9 cut(s) 111, 355, 679, 688, 723, 855, 888, 1057, 1085
NlaIII CATG 9 cut(s) 102, 343, 507, 536, 592, 628, 734, 899, 981
NlaIV GGNNCC 4 cut(s) 385, 509, 817, 952
NmuCI GTSAC 1 cut(s) 467
NspI RCATGY 2 cut(s) 536, 734
PaeI GCATGC 1 cut(s) 536
PceI AGGCCT 1 cut(s) 1014
PciI ACATGT 1 cut(s) 730
PfeI GAWTC 2 cut(s) 430, 802
PflMI CCANNNNNTGG 1 cut(s) 441
PkrI GCNGC 6 cut(s) 277, 287, 290, 371, 481, 538
PleI GAGTC 2 cut(s) 314, 779
PluTI GGCGCC 1 cut(s) 511
PpsI GAGTC 2 cut(s) 314, 779
PpuMI RGGWCCY 1 cut(s) 166
PscI ACATGT 1 cut(s) 730
PshBI ATTAAT 1 cut(s) 39
Psp5II RGGWCCY 1 cut(s) 166
Psp6I CCWGG 3 cut(s) 364, 573, 811
PspFI CCCAGC 1 cut(s) 613
PspGI CCWGG 3 cut(s) 364, 573, 811
PspN4I GGNNCC 4 cut(s) 385, 509, 817, 952
PspPI GGNCC 2 cut(s) 166, 981
PspPPI RGGWCCY 1 cut(s) 166
PstI CTGCAG 1 cut(s) 718
PsuI RGATCY 1 cut(s) 688
PvuII CAGCTG 2 cut(s) 482, 602
RsaI GTAC 3 cut(s) 91, 623, 712
RsaNI GTAC 3 cut(s) 90, 622, 711
RseI CAYNNNNRTG 1 cut(s) 344
SalI GTCGAC 1 cut(s) 847
SaqAI TTAA 4 cut(s) 39, 665, 794, 941
SatI GCNGC 6 cut(s) 276, 286, 289, 370, 480, 537
Sau3AI GATC 9 cut(s) 111, 355, 679, 688, 723, 855, 888, 1057, 1085
Sau96I GGNCC 2 cut(s) 166, 981
ScaI AGTACT 2 cut(s) 91, 712
SchI GAGTC 2 cut(s) 315, 779
ScrFI CCNGG 3 cut(s) 366, 575, 813
SduI GDGCHC 2 cut(s) 571, 777
SexAI ACCWGGT 1 cut(s) 811
SfaNI GCATC 1 cut(s) 43
SfcI CTRYAG 1 cut(s) 714
SfoI GGCGCC 1 cut(s) 509
SinI GGWCC 2 cut(s) 166, 981
SmiMI CAYNNNNRTG 1 cut(s) 344
SmlI CTYRAG 1 cut(s) 67
SmoI CTYRAG 1 cut(s) 67
SphI GCATGC 1 cut(s) 536
Sse9I AATT 2 cut(s) 668, 937
SseBI AGGCCT 1 cut(s) 1014
SsiI CCGC 5 cut(s) 289, 350, 360, 546, 954
SspDI GGCGCC 1 cut(s) 507
SspI AATATT 1 cut(s) 37
SspMI CTAG 4 cut(s) 296, 455, 581, 798
StuI AGGCCT 1 cut(s) 1014
StyD4I CCNGG 3 cut(s) 364, 573, 811
StyI CCWWGG 2 cut(s) 540, 588
TaaI ACNGT 4 cut(s) 621, 874, 927, 966
TaiI ACGT 1 cut(s) 651
TaqI TCGA 4 cut(s) 651, 848, 858, 987
TasI AATT 2 cut(s) 668, 937
TatI WGTACW 3 cut(s) 89, 621, 710
TauI GCSGC 1 cut(s) 291
TfiI GAWTC 2 cut(s) 430, 802
Tru1I TTAA 4 cut(s) 39, 665, 794, 941
Tru9I TTAA 4 cut(s) 39, 665, 794, 941
TscAI CASTG 2 cut(s) 385, 879
TseFI GTSAC 1 cut(s) 467
TseI GCWGC 5 cut(s) 275, 285, 369, 479, 536
Tsp45I GTSAC 1 cut(s) 467
TspDTI ATGAA 2 cut(s) 57, 1021
TspRI CASTG 2 cut(s) 385, 879
Van91I CCANNNNNTGG 1 cut(s) 441
VneI GTGCAC 1 cut(s) 773
VpaK11BI GGWCC 2 cut(s) 166, 981
VspI ATTAAT 1 cut(s) 39
XagI CCTNNNNNAGG 1 cut(s) 230
XceI RCATGY 2 cut(s) 536, 734
XmiI GTMKAC 1 cut(s) 848
XspI CTAG 4 cut(s) 296, 455, 581, 798
ZraI GACGTC 1 cut(s) 649
ZrmI AGTACT 2 cut(s) 91, 712
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.