Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0008074.1

Orthogroup ID

OG0007318

Physical Location & Seq

Genomic Coordinates Reverse (-)

3382 .. 4599

Gene Structure 1218 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0008074.1_g000003.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 597 bp

atgggtcgtcttgcaccattatcagaagaacccaatattaatgaagaagaagatgccacaaatcgctcaagcaaaggcataatgaggagtcagacatggaggaaatggatcaagacccacctcacctcccttgccatcttcaacaagaggtctgacttcaaggtcctcctcagcgttctgggttgccctctcttccctgtctctgccctccccaaactgtccctcaatgaggtctcctctactgcacaatacataatacaacacttcacagcagccacaggctgccgcaagctagaaggtagagtcaagaacatttttgcaaccggaaaagtgaacatggcgatggcggatgatcccgctcctggcagctccaccagcggagccaccaccatatcagaaaaagggtgctttgtaatgtggcagatgattcccaataagtggctgattgagctagttctgggtggtcacaaggtagcagctggtagtgatggcaatgtggcatggcgccacacgccgtggcttggggcgcatgctgccaagggcggtgttcgtcctctccggcgagcactccaggcaagtcattttcttttctcttag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF620

Protein Analysis

198

Amino Acids

21.64

Weight (kDa)

9.91

Isoelectric Point (pI)

46.22

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007318)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G06610
fragaria_vesca	FvH4_6g21510 FvH4_6g21510
malus_domestica	MD12G1052000.v1.1 MD14G1050800.v1.1
prunus_persica	Prupe.7G085100_v2.0.a1 Prupe.7G085100_v2.0.a1 Prupe.7G085100_v2.0.a1
pyrus_communis	pycom12g04580 pycom14g04210
rosa_chinensis	RchiOBHm_Chr3g0478731
rosa_laevigata	RLG00000023629
rosa_multiflora	Rmu_co8159618.1_g000001 Rmu_sc0001519.1_g000010 Rmu_sc0001519.1_g000011 Rmu_sc0008074.1_g000002 Rmu_sc0008074.1_g000003
rosa_roxburghii	Rroxscaffold_6G00403120
rosa_rugosa	Rorug03G0167500
rosa_samantha	Rh3AG219600 Rh3BG251400 Rh3CG248300 Rh3CG248400 Rh3DG244600
rosa_wichuraiana	Rw3G019730

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	161
AccB1I	GGYRCC	1 cut(s)	504
AccB7I	CCANNNNNTGG	1 cut(s)	438
AccBSI	CCGCTC	1 cut(s)	359
AciI	CCGC	5 cut(s)	286, 347, 357, 378, 543
AclWI	GGATC	2 cut(s)	116, 347
AcyI	GRCGYC	1 cut(s)	505
AdeI	CACNNNGTG	1 cut(s)	516
AfiI	CCNNNNNNNGG	4 cut(s)	229, 362, 438, 521
AgsI	TTSAA	2 cut(s)	142, 160
AjnI	CCWGG	2 cut(s)	361, 570
AluBI	AGCT	4 cut(s)	292, 369, 451, 479
AluI	AGCT	4 cut(s)	292, 369, 451, 479
Alw21I	GWGCWC	1 cut(s)	568
Alw26I	GTCTC	2 cut(s)	205, 238
AlwI	GGATC	2 cut(s)	116, 347
ApeKI	GCWGC	5 cut(s)	272, 282, 366, 476, 533
AseI	ATTAAT	1 cut(s)	39
AspLEI	GCGC	2 cut(s)	507, 529
AspS9I	GGNCC	1 cut(s)	163
AsuHPI	GGTGA	1 cut(s)	115
AvaII	GGWCC	1 cut(s)	163
BanI	GGYRCC	1 cut(s)	504
Bbv12I	GWGCWC	1 cut(s)	568
BbvCI	CCTCAGC	1 cut(s)	170
BbvI	GCAGC	5 cut(s)	269, 284, 378, 488, 520
BccI	CCATC	3 cut(s)	143, 337, 482
BceAI	ACGGC	1 cut(s)	499
BciT130I	CCWGG	2 cut(s)	363, 572
BcoDI	GTCTC	2 cut(s)	205, 238
BfaI	CTAG	2 cut(s)	293, 452
BfoI	RGCGCY	1 cut(s)	508
BisI	GCNGC	6 cut(s)	273, 283, 286, 367, 477, 534
BlsI	GCNGC	6 cut(s)	274, 284, 287, 368, 478, 535
Bme1390I	CCNGG	2 cut(s)	363, 572
Bme18I	GGWCC	1 cut(s)	163
BmgT120I	GGNCC	1 cut(s)	163
BmiI	GGNNCC	2 cut(s)	382, 506
BmrFI	CCNGG	2 cut(s)	363, 572
BmsI	GCATC	1 cut(s)	43
BplI	GAGNNNNNCTC	2 cut(s)	221, 253
BpmI	CTGGAG	1 cut(s)	554
Bpu10I	CCTNAGC	1 cut(s)	170
BpuEI	CTTGAG	1 cut(s)	52
BsaHI	GRCGYC	1 cut(s)	505
BsaI	GGTCTC	1 cut(s)	238
BsaJI	CCNNGG	2 cut(s)	515, 537
BsaWI	WCCGGW	1 cut(s)	323
BsaXI	ACNNNNNCTCC	2 cut(s)	110, 140
Bsc4I	CCNNNNNNNGG	4 cut(s)	229, 362, 438, 521
Bse3DI	GCAATG	1 cut(s)	499
BseBI	CCWGG	2 cut(s)	363, 572
BseDI	CCNNGG	2 cut(s)	515, 537
BseGI	GGATG	1 cut(s)	355
BseLI	CCNNNNNNNGG	4 cut(s)	229, 362, 438, 521
BseMI	GCAATG	1 cut(s)	499
BseMII	CTCAG	1 cut(s)	184
BseRI	GAGGAG	3 cut(s)	100, 158, 226
BseXI	GCAGC	5 cut(s)	269, 284, 378, 488, 520
BsgI	GTGCAG	1 cut(s)	228
BshNI	GGYRCC	1 cut(s)	504
BsiHKAI	GWGCWC	1 cut(s)	568
BsiSI	CCGG	2 cut(s)	324, 559
BslFI	GGGAC	1 cut(s)	205
BslI	CCNNNNNNNGG	4 cut(s)	229, 362, 438, 521
BsmAI	GTCTC	2 cut(s)	205, 238
BsmFI	GGGAC	1 cut(s)	205
Bso31I	GGTCTC	1 cut(s)	238
Bsp1286I	GDGCHC	1 cut(s)	568
Bsp143I	GATC	2 cut(s)	108, 352
BspACI	CCGC	5 cut(s)	286, 347, 357, 378, 543
BspCNI	CTCAG	1 cut(s)	183
BspLI	GGNNCC	2 cut(s)	382, 506
BspPI	GGATC	2 cut(s)	116, 347
BspT107I	GGYRCC	1 cut(s)	504
BspTNI	GGTCTC	1 cut(s)	238
BsrBI	CCGCTC	1 cut(s)	359
BsrDI	GCAATG	1 cut(s)	499
BssECI	CCNNGG	2 cut(s)	515, 537
BssMI	GATC	2 cut(s)	108, 352
BssNI	GRCGYC	1 cut(s)	505
BssT1I	CCWWGG	1 cut(s)	537
Bst2UI	CCWGG	2 cut(s)	363, 572
Bst4CI	ACNGT	1 cut(s)	219
Bst6I	CTCTTC	1 cut(s)	197
BstACI	GRCGYC	1 cut(s)	505
BstC8I	GCNNGC	3 cut(s)	290, 531, 564
BstDEI	CTNAG	2 cut(s)	170, 594
BstDSI	CCRYGG	1 cut(s)	515
BstENI	CCTNNNNNAGG	1 cut(s)	227
BstF5I	GGATG	1 cut(s)	355
BstH2I	RGCGCY	1 cut(s)	508
BstHHI	GCGC	2 cut(s)	507, 529
BstKTI	GATC	2 cut(s)	111, 355
BstMAI	GTCTC	2 cut(s)	205, 238
BstMBI	GATC	2 cut(s)	108, 352
BstMWI	GCNNNNNNNGC	6 cut(s)	375, 448, 511, 526, 533, 572
BstNI	CCWGG	2 cut(s)	363, 572
BstNSI	RCATGY	1 cut(s)	533
BstSCI	CCNGG	2 cut(s)	361, 570
BstV1I	GCAGC	5 cut(s)	269, 284, 378, 488, 520
BtgI	CCRYGG	1 cut(s)	515
BtgZI	GCGATG	1 cut(s)	356
BtsCI	GGATG	1 cut(s)	355
Cac8I	GCNNGC	3 cut(s)	290, 531, 564
CfoI	GCGC	2 cut(s)	507, 529
Cfr13I	GGNCC	1 cut(s)	163
CviAII	CATG	4 cut(s)	96, 337, 501, 530
CviJI	RGCY	9 cut(s)	275, 282, 292, 369, 383, 442, 451, 479, 520
CviKI_1	RGCY	9 cut(s)	275, 282, 292, 369, 383, 442, 451, 479, 520
DdeI	CTNAG	2 cut(s)	170, 594
DinI	GGCGCC	1 cut(s)	506
DpnI	GATC	2 cut(s)	110, 354
DpnII	GATC	2 cut(s)	108, 352
DraIII	CACNNNGTG	1 cut(s)	516
DrdI	GACNNNNNNGTC	1 cut(s)	161
DseDI	GACNNNNNNGTC	1 cut(s)	161
Eam1104I	CTCTTC	1 cut(s)	197
EarI	CTCTTC	1 cut(s)	197
EciI	GGCGGA	1 cut(s)	362
Eco130I	CCWWGG	1 cut(s)	537
Eco31I	GGTCTC	1 cut(s)	238
Eco47I	GGWCC	1 cut(s)	163
EcoNI	CCTNNNNNAGG	1 cut(s)	227
EcoO109I	RGGNCCY	1 cut(s)	163
EcoRII	CCWGG	2 cut(s)	361, 570
EcoT14I	CCWWGG	1 cut(s)	537
EgeI	GGCGCC	1 cut(s)	506
EheI	GGCGCC	1 cut(s)	506
ErhI	CCWWGG	1 cut(s)	537
FaeI	CATG	4 cut(s)	99, 340, 504, 533
FaiI	YATR	7 cut(s)	80, 97, 254, 338, 392, 502, 531
FaqI	GGGAC	1 cut(s)	205
FatI	CATG	4 cut(s)	95, 336, 500, 529
FauI	CCCGC	1 cut(s)	364
Fnu4HI	GCNGC	6 cut(s)	273, 283, 286, 367, 477, 534
FokI	GGATG	1 cut(s)	362
Fsp4HI	GCNGC	6 cut(s)	273, 283, 286, 367, 477, 534
FspBI	CTAG	2 cut(s)	293, 452
GlaI	GCGC	2 cut(s)	506, 528
GluI	GCNGC	6 cut(s)	273, 283, 286, 367, 477, 534
GsuI	CTGGAG	1 cut(s)	554
HaeII	RGCGCY	1 cut(s)	508
HapII	CCGG	2 cut(s)	324, 559
HhaI	GCGC	2 cut(s)	507, 529
Hin1I	GRCGYC	1 cut(s)	505
Hin1II	CATG	4 cut(s)	99, 340, 504, 533
Hin6I	GCGC	2 cut(s)	505, 527
HinP1I	GCGC	2 cut(s)	505, 527
HinfI	GANTC	3 cut(s)	88, 303, 427
HpaII	CCGG	2 cut(s)	324, 559
HphI	GGTGA	1 cut(s)	115
Hpy166II	GTNNAC	1 cut(s)	334
Hpy188I	TCNGA	4 cut(s)	25, 93, 154, 397
Hpy188III	TCNNGA	2 cut(s)	112, 307
Hpy8I	GTNNAC	1 cut(s)	334
HpyAV	CCTTC	1 cut(s)	290
HpyCH4III	ACNGT	1 cut(s)	219
HpyCH4V	TGCA	3 cut(s)	14, 245, 320
HpyF10VI	GCNNNNNNNGC	6 cut(s)	375, 448, 511, 526, 533, 572
HpyF3I	CTNAG	2 cut(s)	170, 594
Hsp92I	GRCGYC	1 cut(s)	505
Hsp92II	CATG	4 cut(s)	99, 340, 504, 533
HspAI	GCGC	2 cut(s)	505, 527
KasI	GGCGCC	1 cut(s)	504
Kzo9I	GATC	2 cut(s)	108, 352
LmnI	GCTCC	3 cut(s)	364, 374, 380
Lsp1109I	GCAGC	5 cut(s)	269, 284, 378, 488, 520
LweI	GCATC	1 cut(s)	43
MaeI	CTAG	2 cut(s)	293, 452
MaeIII	GTNAC	1 cut(s)	464
MalI	GATC	2 cut(s)	110, 354
MbiI	CCGCTC	1 cut(s)	359
MboI	GATC	2 cut(s)	108, 352
MboII	GAAGA	6 cut(s)	38, 56, 59, 62, 130, 184
MhlI	GDGCHC	1 cut(s)	568
Mly113I	GGCGCC	1 cut(s)	505
MlyI	GAGTC	2 cut(s)	97, 312
MseI	TTAA	1 cut(s)	39
MslI	CAYNNNNRTG	1 cut(s)	341
MspA1I	CMGCKG	2 cut(s)	378, 479
MspI	CCGG	2 cut(s)	324, 559
MspR9I	CCNGG	2 cut(s)	363, 572
MvaI	CCWGG	2 cut(s)	363, 572
MwoI	GCNNNNNNNGC	6 cut(s)	375, 448, 511, 526, 533, 572
NarI	GGCGCC	1 cut(s)	505
NdeII	GATC	2 cut(s)	108, 352
NlaIII	CATG	4 cut(s)	99, 340, 504, 533
NlaIV	GGNNCC	2 cut(s)	382, 506
NmuCI	GTSAC	1 cut(s)	464
NspI	RCATGY	1 cut(s)	533
PaeI	GCATGC	1 cut(s)	533
PfeI	GAWTC	1 cut(s)	427
PflMI	CCANNNNNTGG	1 cut(s)	438
PkrI	GCNGC	6 cut(s)	274, 284, 287, 368, 478, 535
PleI	GAGTC	2 cut(s)	96, 311
PluTI	GGCGCC	1 cut(s)	508
PpsI	GAGTC	2 cut(s)	96, 311
PpuMI	RGGWCCY	1 cut(s)	163
PshBI	ATTAAT	1 cut(s)	39
Psp5II	RGGWCCY	1 cut(s)	163
Psp6I	CCWGG	2 cut(s)	361, 570
PspGI	CCWGG	2 cut(s)	361, 570
PspN4I	GGNNCC	2 cut(s)	382, 506
PspPI	GGNCC	1 cut(s)	163
PspPPI	RGGWCCY	1 cut(s)	163
PvuII	CAGCTG	1 cut(s)	479
RseI	CAYNNNNRTG	1 cut(s)	341
SaqAI	TTAA	1 cut(s)	39
SatI	GCNGC	6 cut(s)	273, 283, 286, 367, 477, 534
Sau3AI	GATC	2 cut(s)	108, 352
Sau96I	GGNCC	1 cut(s)	163
SchI	GAGTC	2 cut(s)	97, 312
ScrFI	CCNGG	2 cut(s)	363, 572
SduI	GDGCHC	1 cut(s)	568
SfaNI	GCATC	1 cut(s)	43
SfoI	GGCGCC	1 cut(s)	506
SinI	GGWCC	1 cut(s)	163
SmiMI	CAYNNNNRTG	1 cut(s)	341
SmlI	CTYRAG	1 cut(s)	67
SmoI	CTYRAG	1 cut(s)	67
SphI	GCATGC	1 cut(s)	533
SsiI	CCGC	5 cut(s)	286, 347, 357, 378, 543
SspDI	GGCGCC	1 cut(s)	504
SspI	AATATT	1 cut(s)	37
SspMI	CTAG	2 cut(s)	293, 452
StyD4I	CCNGG	2 cut(s)	361, 570
StyI	CCWWGG	1 cut(s)	537
TaaI	ACNGT	1 cut(s)	219
TauI	GCSGC	1 cut(s)	288
TfiI	GAWTC	1 cut(s)	427
Tru1I	TTAA	1 cut(s)	39
Tru9I	TTAA	1 cut(s)	39
TseFI	GTSAC	1 cut(s)	464
TseI	GCWGC	5 cut(s)	272, 282, 366, 476, 533
Tsp45I	GTSAC	1 cut(s)	464
TspDTI	ATGAA	1 cut(s)	57
Van91I	CCANNNNNTGG	1 cut(s)	438
VpaK11BI	GGWCC	1 cut(s)	163
VspI	ATTAAT	1 cut(s)	39
XagI	CCTNNNNNAGG	1 cut(s)	227
XceI	RCATGY	1 cut(s)	533
XspI	CTAG	2 cut(s)	293, 452

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.