Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0007908

Physical Location & Seq

Genomic Coordinates Reverse (-)

2067941 .. 2070566

Gene Structure 2626 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

AT5G06710.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1011 bp

ATGGAACTAGCGTTGTCTCTAGGCGACAATACTAAGAAACAGTTCTCTTTTATGGAGAAGAACTCGAAGATTAATAATCCCTCTGTCTCGTCGACATCTACTTCCGAGAAGGATCTTGGGTTCTGCATGGCTTTAGATGTTGCTTTTGGTGGTCACAGATCGTTGTCATCCTCTTCGTCTCCGTCGGTAGAGGATGAGAAGAAGAAACCGGCGCCCAGAGCAAAAAAATCTGACGAATTTAGGGTTTCGTCTTCTGTAGATCCACCATTACAGCTTCAGCTTCACTTCCCTAATTGGCTCCCTGAGAACAGTAAAGGTCGACAAGGAGGAAGAATGCCCTTAGGAGCAGCTACGGTTGTGGAGGAGGAAGAGGAGGAGGAGGAAGCGGTGCCTAGTATGTCAGTATCGCCGCCGGATAGTGTAACGTCGTCGTTTCAATTGGACTTTGGGATTAAAAGTTATGGTTATGAGAGAAGAAGCAATAAGAGAGATATTGATGATGAAGTGGAGAGATCAGCTTCAAGAGCCAGCAACGAAGACAACGATGACGAGAATGGATCCACTAGGAAGAAACTTAGACTCTCCAAAGACCAATCTGCTTTTCTTGAAGACAGCTTCAAAGAACACAGTACCCTTAATCCTAAACAGAAGATTGCATTGGCGAAGCAGTTGAATCTTCGTCCTCGTCAGGTTGAAGTCTGGTTTCAAAACAGACGAGCCAGGACAAAGCTGAAGCAAACGGAAGTGGACTGTGAATACCTAAAGAGATGCTGTGAGTCACTAACCGAAGAAAACCGGAGGCTTCAAAAAGAGGTTAAAGAATTGAGAACCTTGAAGACTTCCACACCCTTTTACATGCAACTTCCGGCCACTACTCTCACTATGTGCCCTTCTTGTGAACGTGTTGCCACTTCAGCAGCACAGCCCTCCACGTCAGCTGCCCACAACCTCTGTTTGTCCACGTCATCATTGATTCCGGTTAAGCCTCGGCCGGCCAAACAAGTTTCATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003700 GO:0006355 GO:0008150 GO:0009889 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0080090 GO:0140110 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

HALZ HD-ZIP_N Homeobox

Protein Analysis

336

Amino Acids

37.6

Weight (kDa)

8.37

Isoelectric Point (pI)

65.86

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Homeodomain	PF00046	189 - 243	1.8e-15	Homeodomain
HALZ	PF02183	245 - 278	7.7e-11	Homeobox associated leucine zipper

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0007908)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G06710 AT5G06710 AT5G06710 AT5G06710
fragaria_vesca	FvH4_6g22050
malus_domestica	MD01G1069700.v1.1 MD12G1055800.v1.1 MD14G1056200.v1.1 MD14G1056300.v1.1
prunus_persica	Prupe.7G079300_v2.0.a1 Prupe.7G079300_v2.0.a1
pyrus_communis	pycom12g04870 pycom14g04600
rosa_chinensis	RchiOBHm_Chr3g0479361
rosa_laevigata	RLG00000023581
rosa_multiflora	Rmu_sc0006763.1_g000001 Rmu_sc0033237.1_g000001
rosa_roxburghii	Rroxscaffold_6G00402380
rosa_rugosa	Rorug03G0174600
rosa_samantha	Rh3AG225900 Rh3BG258600 Rh3CG254200 Rh3DG250000
rosa_wichuraiana	Rw3G020170

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	2 cut(s)	211, 388
AccI	GTMKAC	2 cut(s)	92, 319
AciI	CCGC	2 cut(s)	386, 410
AclWI	GGATC	4 cut(s)	120, 254, 552, 565
AcoI	YGGCCR	3 cut(s)	867, 989, 993
AcsI	RAATTY	1 cut(s)	236
AcuI	CTGAAG	3 cut(s)	260, 752, 897
AcyI	GRCGYC	1 cut(s)	212
AdeI	CACNNNGTG	1 cut(s)	885
AfaI	GTAC	1 cut(s)	631
AflIII	ACRYGT	1 cut(s)	901
AgsI	TTSAA	9 cut(s)	437, 522, 608, 619, 673, 695, 707, 806, 835
AjiI	CACGTC	2 cut(s)	933, 963
AjnI	CCWGG	1 cut(s)	719
AjuI	GAANNNNNNNTTGG	4 cut(s)	585, 617, 641, 673
AloI	GAACNNNNNNTCC	2 cut(s)	104, 136
AluBI	AGCT	7 cut(s)	274, 280, 350, 518, 615, 730, 938
AluI	AGCT	7 cut(s)	274, 280, 350, 518, 615, 730, 938
Alw26I	GTCTC	3 cut(s)	21, 91, 183
AlwI	GGATC	4 cut(s)	120, 254, 552, 565
AoxI	GGCC	3 cut(s)	867, 989, 993
ApeKI	GCWGC	3 cut(s)	347, 917, 938
ApoI	RAATTY	1 cut(s)	236
AseI	ATTAAT	1 cut(s)	72
Asp700I	GAANNNNTTC	1 cut(s)	41
AspLEI	GCGC	1 cut(s)	214
AxyI	CCTNAGG	1 cut(s)	340
BaeGI	GKGCMC	1 cut(s)	890
BamHI	GGATCC	1 cut(s)	557
BanI	GGYRCC	2 cut(s)	211, 388
BbsI	GAAGAC	4 cut(s)	243, 543, 615, 842
BbvI	GCAGC	3 cut(s)	359, 925, 929
BciT130I	CCWGG	1 cut(s)	721
BcoDI	GTCTC	3 cut(s)	21, 91, 183
BfaI	CTAG	4 cut(s)	8, 20, 393, 564
BfmI	CTRYAG	1 cut(s)	255
BfoI	RGCGCY	1 cut(s)	215
BisI	GCNGC	4 cut(s)	348, 410, 918, 939
BlsI	GCNGC	4 cut(s)	349, 411, 919, 940
Bme1390I	CCNGG	1 cut(s)	721
BmgBI	CACGTC	2 cut(s)	933, 963
BmiI	GGNNCC	4 cut(s)	213, 299, 390, 559
BmrFI	CCNGG	1 cut(s)	721
BmsI	GCATC	1 cut(s)	758
BpiI	GAAGAC	4 cut(s)	243, 543, 615, 842
BplI	GAGNNNNNCTC	2 cut(s)	47, 79
BsaHI	GRCGYC	1 cut(s)	212
BsaJI	CCNNGG	1 cut(s)	986
BsaWI	WCCGGW	2 cut(s)	795, 976
Bse118I	RCCGGY	2 cut(s)	208, 991
Bse21I	CCTNAGG	1 cut(s)	340
BseBI	CCWGG	1 cut(s)	721
BseDI	CCNNGG	1 cut(s)	986
BseGI	GGATG	2 cut(s)	167, 199
BseMII	CTCAG	1 cut(s)	294
BseRI	GAGGAG	4 cut(s)	377, 386, 389, 392
BseSI	GKGCMC	1 cut(s)	890
BseX3I	CGGCCG	1 cut(s)	989
BseXI	GCAGC	3 cut(s)	359, 925, 929
Bsh1285I	CGRYCG	1 cut(s)	992
BshFI	GGCC	3 cut(s)	869, 991, 995
BshNI	GGYRCC	2 cut(s)	211, 388
BsiEI	CGRYCG	1 cut(s)	992
BsiSI	CCGG	6 cut(s)	209, 413, 796, 866, 977, 992
BsmAI	GTCTC	3 cut(s)	21, 91, 183
BsmBI	CGTCTC	1 cut(s)	183
BsmI	GAATGC	1 cut(s)	339
BsnI	GGCC	3 cut(s)	869, 991, 995
Bsp1286I	GDGCHC	1 cut(s)	890
Bsp143I	GATC	5 cut(s)	112, 158, 259, 512, 557
BspACI	CCGC	2 cut(s)	386, 410
BspANI	GGCC	3 cut(s)	869, 991, 995
BspCNI	CTCAG	1 cut(s)	295
BspHI	TCATGA	1 cut(s)	1007
BspLI	GGNNCC	4 cut(s)	213, 299, 390, 559
BspPI	GGATC	4 cut(s)	120, 254, 552, 565
BspT107I	GGYRCC	2 cut(s)	211, 388
BsrFI	RCCGGY	2 cut(s)	208, 991
BssAI	RCCGGY	2 cut(s)	208, 991
BssECI	CCNNGG	1 cut(s)	986
BssMI	GATC	5 cut(s)	112, 158, 259, 512, 557
BssNI	GRCGYC	1 cut(s)	212
Bst2UI	CCWGG	1 cut(s)	721
Bst4CI	ACNGT	5 cut(s)	42, 311, 355, 629, 752
Bst6I	CTCTTC	2 cut(s)	178, 363
BstACI	GRCGYC	1 cut(s)	212
BstC8I	GCNNGC	2 cut(s)	529, 993
BstDEI	CTNAG	4 cut(s)	33, 303, 340, 575
BstF5I	GGATG	2 cut(s)	167, 199
BstH2I	RGCGCY	1 cut(s)	215
BstHHI	GCGC	1 cut(s)	214
BstKTI	GATC	5 cut(s)	115, 161, 262, 515, 560
BstMAI	GTCTC	3 cut(s)	21, 91, 183
BstMBI	GATC	5 cut(s)	112, 158, 259, 512, 557
BstMCI	CGRYCG	1 cut(s)	992
BstMWI	GCNNNNNNNGC	3 cut(s)	218, 524, 914
BstNI	CCWGG	1 cut(s)	721
BstNSI	RCATGY	1 cut(s)	859
BstSCI	CCNGG	1 cut(s)	719
BstSFI	CTRYAG	1 cut(s)	255
BstSLI	GKGCMC	1 cut(s)	890
BstV1I	GCAGC	3 cut(s)	359, 925, 929
BstV2I	GAAGAC	4 cut(s)	243, 543, 615, 842
BstX2I	RGATCY	3 cut(s)	112, 259, 557
BstYI	RGATCY	3 cut(s)	112, 259, 557
BstZI	CGGCCG	1 cut(s)	989
Bsu36I	CCTNAGG	1 cut(s)	340
BsuRI	GGCC	3 cut(s)	869, 991, 995
BtrI	CACGTC	2 cut(s)	933, 963
BtsCI	GGATG	2 cut(s)	167, 199
Cac8I	GCNNGC	2 cut(s)	529, 993
CciI	TCATGA	1 cut(s)	1007
CfoI	GCGC	1 cut(s)	214
Cfr10I	RCCGGY	2 cut(s)	208, 991
Csp6I	GTAC	1 cut(s)	630
CviAII	CATG	3 cut(s)	127, 856, 1008
CviQI	GTAC	1 cut(s)	630
DdeI	CTNAG	4 cut(s)	33, 303, 340, 575
DinI	GGCGCC	1 cut(s)	213
DpnI	GATC	5 cut(s)	114, 160, 261, 514, 559
DpnII	GATC	5 cut(s)	112, 158, 259, 512, 557
DraIII	CACNNNGTG	1 cut(s)	885
EaeI	YGGCCR	3 cut(s)	867, 989, 993
EagI	CGGCCG	1 cut(s)	989
Eam1104I	CTCTTC	2 cut(s)	178, 363
EarI	CTCTTC	2 cut(s)	178, 363
EclXI	CGGCCG	1 cut(s)	989
Eco52I	CGGCCG	1 cut(s)	989
Eco57I	CTGAAG	3 cut(s)	260, 752, 897
Eco81I	CCTNAGG	1 cut(s)	340
EcoRII	CCWGG	1 cut(s)	719
EgeI	GGCGCC	1 cut(s)	213
EheI	GGCGCC	1 cut(s)	213
Esp3I	CGTCTC	1 cut(s)	183
FaeI	CATG	3 cut(s)	130, 859, 1011
FaiI	YATR	8 cut(s)	53, 128, 398, 462, 468, 857, 884, 1009
FatI	CATG	3 cut(s)	126, 855, 1007
FblI	GTMKAC	2 cut(s)	92, 319
Fnu4HI	GCNGC	4 cut(s)	348, 410, 918, 939
FokI	GGATG	2 cut(s)	154, 206
FseI	GGCCGGCC	1 cut(s)	995
Fsp4HI	GCNGC	4 cut(s)	348, 410, 918, 939
FspBI	CTAG	4 cut(s)	8, 20, 393, 564
GlaI	GCGC	1 cut(s)	213
GluI	GCNGC	4 cut(s)	348, 410, 918, 939
HaeII	RGCGCY	1 cut(s)	215
HaeIII	GGCC	3 cut(s)	869, 991, 995
HapII	CCGG	6 cut(s)	209, 413, 796, 866, 977, 992
HhaI	GCGC	1 cut(s)	214
Hin1I	GRCGYC	1 cut(s)	212
Hin1II	CATG	3 cut(s)	130, 859, 1011
Hin6I	GCGC	1 cut(s)	212
HinP1I	GCGC	1 cut(s)	212
HincII	GTYRAC	2 cut(s)	93, 320
HindII	GTYRAC	2 cut(s)	93, 320
HinfI	GANTC	4 cut(s)	579, 673, 776, 973
HpaII	CCGG	6 cut(s)	209, 413, 796, 866, 977, 992
Hpy166II	GTNNAC	5 cut(s)	93, 320, 748, 899, 960
Hpy188I	TCNGA	2 cut(s)	106, 232
Hpy188III	TCNNGA	3 cut(s)	522, 605, 1008
Hpy8I	GTNNAC	5 cut(s)	93, 320, 748, 899, 960
Hpy99I	CGWCG	4 cut(s)	94, 187, 430, 433
HpyAV	CCTTC	2 cut(s)	103, 900
HpyCH4III	ACNGT	5 cut(s)	42, 311, 355, 629, 752
HpyCH4IV	ACGT	4 cut(s)	425, 901, 932, 962
HpyCH4V	TGCA	3 cut(s)	126, 656, 859
HpyF10VI	GCNNNNNNNGC	3 cut(s)	218, 524, 914
HpyF3I	CTNAG	4 cut(s)	33, 303, 340, 575
HpySE526I	ACGT	4 cut(s)	425, 901, 932, 962
Hsp92I	GRCGYC	1 cut(s)	212
Hsp92II	CATG	3 cut(s)	130, 859, 1011
HspAI	GCGC	1 cut(s)	212
KasI	GGCGCC	1 cut(s)	211
KroI	GCCGGC	1 cut(s)	991
KroNI	GCCGGC	1 cut(s)	993
Kzo9I	GATC	5 cut(s)	112, 158, 259, 512, 557
LmnI	GCTCC	2 cut(s)	303, 344
Lsp1109I	GCAGC	3 cut(s)	359, 925, 929
LweI	GCATC	1 cut(s)	758
MaeI	CTAG	4 cut(s)	8, 20, 393, 564
MaeII	ACGT	4 cut(s)	425, 901, 932, 962
MaeIII	GTNAC	3 cut(s)	152, 421, 777
MalI	GATC	5 cut(s)	114, 160, 261, 514, 559
MboI	GATC	5 cut(s)	112, 158, 259, 512, 557
MfeI	CAATTG	1 cut(s)	437
MflI	RGATCY	3 cut(s)	112, 259, 557
MhlI	GDGCHC	1 cut(s)	890
MluCI	AATT	4 cut(s)	236, 292, 437, 821
Mly113I	GGCGCC	1 cut(s)	212
MlyI	GAGTC	2 cut(s)	573, 785
MroNI	GCCGGC	1 cut(s)	991
MroXI	GAANNNNTTC	1 cut(s)	41
MseI	TTAA	5 cut(s)	72, 453, 636, 816, 981
MspA1I	CMGCKG	1 cut(s)	938
MspI	CCGG	6 cut(s)	209, 413, 796, 866, 977, 992
MspR9I	CCNGG	1 cut(s)	721
MunI	CAATTG	1 cut(s)	437
Mva1269I	GAATGC	1 cut(s)	339
MvaI	CCWGG	1 cut(s)	721
MwoI	GCNNNNNNNGC	3 cut(s)	218, 524, 914
NaeI	GCCGGC	1 cut(s)	993
NarI	GGCGCC	1 cut(s)	212
NdeII	GATC	5 cut(s)	112, 158, 259, 512, 557
NgoMIV	GCCGGC	1 cut(s)	991
NlaIII	CATG	3 cut(s)	130, 859, 1011
NlaIV	GGNNCC	4 cut(s)	213, 299, 390, 559
NmeAIII	GCCGAG	1 cut(s)	967
NmuCI	GTSAC	2 cut(s)	152, 777
NspI	RCATGY	1 cut(s)	859
PagI	TCATGA	1 cut(s)	1007
PcsI	WCGNNNNNNNCGW	1 cut(s)	540
PctI	GAATGC	1 cut(s)	339
PdiI	GCCGGC	1 cut(s)	993
PdmI	GAANNNNTTC	1 cut(s)	41
PfeI	GAWTC	2 cut(s)	673, 973
PkrI	GCNGC	4 cut(s)	349, 411, 919, 940
PleI	GAGTC	2 cut(s)	573, 784
PluTI	GGCGCC	1 cut(s)	215
PpsI	GAGTC	2 cut(s)	573, 784
PshBI	ATTAAT	1 cut(s)	72
Psp6I	CCWGG	1 cut(s)	719
PspGI	CCWGG	1 cut(s)	719
PspN4I	GGNNCC	4 cut(s)	213, 299, 390, 559
PsuI	RGATCY	3 cut(s)	112, 259, 557
PvuII	CAGCTG	1 cut(s)	938
RigI	GGCCGGCC	1 cut(s)	995
RsaI	GTAC	1 cut(s)	631
RsaNI	GTAC	1 cut(s)	630
SalI	GTCGAC	2 cut(s)	91, 318
SaqAI	TTAA	5 cut(s)	72, 453, 636, 816, 981
SatI	GCNGC	4 cut(s)	348, 410, 918, 939
Sau3AI	GATC	5 cut(s)	112, 158, 259, 512, 557
SchI	GAGTC	2 cut(s)	573, 785
ScrFI	CCNGG	1 cut(s)	721
SduI	GDGCHC	1 cut(s)	890
SfaNI	GCATC	1 cut(s)	758
SfcI	CTRYAG	1 cut(s)	255
SfoI	GGCGCC	1 cut(s)	213
Sse9I	AATT	4 cut(s)	236, 292, 437, 821
SsiI	CCGC	2 cut(s)	386, 410
SspDI	GGCGCC	1 cut(s)	211
SspMI	CTAG	4 cut(s)	8, 20, 393, 564
StyD4I	CCNGG	1 cut(s)	719
TaaI	ACNGT	5 cut(s)	42, 311, 355, 629, 752
TaiI	ACGT	4 cut(s)	428, 904, 935, 965
TaqI	TCGA	3 cut(s)	65, 92, 319
TasI	AATT	4 cut(s)	236, 292, 437, 821
TauI	GCSGC	1 cut(s)	412
TfiI	GAWTC	2 cut(s)	673, 973
Tru1I	TTAA	5 cut(s)	72, 453, 636, 816, 981
Tru9I	TTAA	5 cut(s)	72, 453, 636, 816, 981
TseFI	GTSAC	2 cut(s)	152, 777
TseI	GCWGC	3 cut(s)	347, 917, 938
Tsp45I	GTSAC	2 cut(s)	152, 777
TspDTI	ATGAA	2 cut(s)	516, 996
TspGWI	ACGGA	2 cut(s)	171, 755
VspI	ATTAAT	1 cut(s)	72
XapI	RAATTY	1 cut(s)	236
XceI	RCATGY	1 cut(s)	859
XmiI	GTMKAC	2 cut(s)	92, 319
XmnI	GAANNNNTTC	1 cut(s)	41
XspI	CTAG	4 cut(s)	8, 20, 393, 564

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.