Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb6

Orthogroup ID

OG0007908

Physical Location & Seq

Genomic Coordinates Reverse (-)

15727022 .. 15729297

Gene Structure 2276 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_6g22050.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1029 bp

ATGGAGCTTGCTCTCAGCTTAGGCGATGCTCCAAAGCAGTTTCTCTTCCTTGACAAAGCCCCAAGCGTGGGCAGCAGCAAAGATCTAGGGTTTTGCATGGCCCTAGGAAGCAGGGAAGGCTATGATCAAGAAGATGAGAGCAATCGAAGAAGAAGAAGGGTTTCTTCAGATCCACCTATTCAGCTCAATCTCTTGCCTTCTGTTCCCGTCATGAAGACTCCTTCGCAGCTCCGCTTCCCCTGGCTCACTGATAACTTGGCAGTGTCCGAACCGGCCGGTCTGGATGAACCAGGAAAGGGGCTGGATGTGAACCGGTTCCCCTTGGTGGCGGGTAACGCCGAAGAGGCAGAAGACGCGGCGGCGCAGCTCTCTTCTCCAAACAGCACCGTCTCGTCGTTCCAGATGGATTTCGGTGTCAGGAGAAGCAAGAGAGACTTGGATTTGGAGGTGCTCGAGACTGAGAGAGCGAGTTCAAGAGCGAGTGACGACGACGAGAACGGGTCGACTCGGAAGAAACTCAGGCTCTCAAAGGACCAATCGGCTTTTCTTGAGGAGAGCTTCAAAGAACACAGCACCTTAAATCCTAAGCAAAAAATAGCTCTGGCAAAACAGTTAAATCTTCGTCCACGCCAAGTGGAAGTGTGGTTTCAGAATCGAAGAGCAAGGACCAAGTTGAAGCAGACAGAAGTAGATTGTGAGTACTTAAAGAGGTGCTGCGAAACACTGACAGAAGAGAACAGGAGGTTACAAAAGGAACTGCAAGAATTAAGAGCCTTGAAAACCTCTCAACCTTTCTACATGCAGCTTCCAGCCACCACTCTCACAATGTGCCCCTCCTGCGAGCGCGTCGTCACCACCGCCTCCGCAACCACCGCTACCACCAACGCAACCCCCAACACCACCACCATCAAGTCCTCTACTCCTTCTGGTCTAACCAGTAACCATTCGAGGTTACACAGTCACAGTCCCTTTGCTAAAGCCCAGGCTCACATGCAGCCTCAGGTCCAAGCTAACAAAGGTGCTGCATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003700 GO:0006355 GO:0008150 GO:0009889 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0080090 GO:0140110 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

HALZ HD-ZIP_N Homeobox

Protein Analysis

343

Amino Acids

38.01

Weight (kDa)

8.68

Isoelectric Point (pI)

63.08

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
HD-ZIP_N	PF04618	28 - 144	2e-07	HD-ZIP protein N terminus
Homeodomain	PF00046	170 - 224	1.8e-15	Homeodomain
HALZ	PF02183	226 - 260	8.8e-11	Homeobox associated leucine zipper

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0007908)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G06710 AT5G06710 AT5G06710 AT5G06710
fragaria_vesca	FvH4_6g22050
malus_domestica	MD01G1069700.v1.1 MD12G1055800.v1.1 MD14G1056200.v1.1 MD14G1056300.v1.1
prunus_persica	Prupe.7G079300_v2.0.a1 Prupe.7G079300_v2.0.a1
pyrus_communis	pycom12g04870 pycom14g04600
rosa_chinensis	RchiOBHm_Chr3g0479361
rosa_laevigata	RLG00000023581
rosa_multiflora	Rmu_sc0006763.1_g000001 Rmu_sc0033237.1_g000001
rosa_roxburghii	Rroxscaffold_6G00402380
rosa_rugosa	Rorug03G0174600
rosa_samantha	Rh3AG225900 Rh3BG258600 Rh3CG254200 Rh3DG250000
rosa_wichuraiana	Rw3G020170

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	503
AccII	CGCG	2 cut(s)	356, 846
AciI	CCGC	7 cut(s)	232, 329, 356, 359, 858, 864, 873
AclWI	GGATC	1 cut(s)	164
AcoI	YGGCCR	1 cut(s)	273
AcuI	CTGAAG	1 cut(s)	150
AdeI	CACNNNGTG	1 cut(s)	828
AfaI	GTAC	1 cut(s)	701
AfiI	CCNNNNNNNGG	4 cut(s)	67, 68, 296, 325
AgeI	ACCGGT	1 cut(s)	312
AgsI	TTSAA	4 cut(s)	474, 562, 676, 778
AjnI	CCWGG	3 cut(s)	239, 289, 981
AjuI	GAANNNNNNNTTGG	2 cut(s)	528, 560
AluBI	AGCT	9 cut(s)	7, 18, 184, 229, 367, 558, 599, 805, 1010
AluI	AGCT	9 cut(s)	7, 18, 184, 229, 367, 558, 599, 805, 1010
Alw21I	GWGCWC	1 cut(s)	453
Alw26I	GTCTC	3 cut(s)	394, 426, 449
AlwI	GGATC	1 cut(s)	164
Ama87I	CYCGRG	1 cut(s)	452
AoxI	GGCC	2 cut(s)	99, 273
ApeKI	GCWGC	8 cut(s)	72, 75, 226, 364, 714, 802, 994, 1022
AsiGI	ACCGGT	1 cut(s)	312
Asp700I	GAANNNNTTC	2 cut(s)	160, 314
AspA2I	CCTAGG	1 cut(s)	103
AspLEI	GCGC	2 cut(s)	364, 846
AspS9I	GGNCC	4 cut(s)	100, 532, 666, 1003
AsuHPI	GGTGA	1 cut(s)	844
AvaI	CYCGRG	1 cut(s)	452
AvaII	GGWCC	3 cut(s)	532, 666, 1003
AvrII	CCTAGG	1 cut(s)	103
AxyI	CCTNAGG	1 cut(s)	999
BaeGI	GKGCMC	1 cut(s)	833
BbsI	GAAGAC	2 cut(s)	221, 357
Bbv12I	GWGCWC	1 cut(s)	453
BbvI	GCAGC	8 cut(s)	84, 87, 238, 376, 701, 814, 1006, 1009
BccI	CCATC	2 cut(s)	397, 914
BciT130I	CCWGG	3 cut(s)	241, 291, 983
BclI	TGATCA	1 cut(s)	124
BcoDI	GTCTC	3 cut(s)	394, 426, 449
BfaI	CTAG	2 cut(s)	86, 104
BglI	GCCNNNNNGGC	1 cut(s)	344
BglII	AGATCT	1 cut(s)	82
BlnI	CCTAGG	1 cut(s)	103
BmcAI	AGTACT	1 cut(s)	701
Bme1390I	CCNGG	3 cut(s)	241, 291, 983
Bme18I	GGWCC	3 cut(s)	532, 666, 1003
BmeT110I	CYCGRG	1 cut(s)	452
BmgT120I	GGNCC	4 cut(s)	100, 532, 666, 1003
BmiI	GGNNCC	1 cut(s)	317
BmrFI	CCNGG	3 cut(s)	241, 291, 983
BmsI	GCATC	1 cut(s)	16
BpiI	GAAGAC	2 cut(s)	221, 357
Bpu10I	CCTNAGC	2 cut(s)	19, 585
BpuEI	CTTGAG	1 cut(s)	569
BsaJI	CCNNGG	4 cut(s)	103, 239, 321, 981
BsaWI	WCCGGW	1 cut(s)	312
Bsc4I	CCNNNNNNNGG	4 cut(s)	67, 68, 296, 325
Bse118I	RCCGGY	3 cut(s)	271, 275, 312
Bse1I	ACTGG	1 cut(s)	936
Bse21I	CCTNAGG	1 cut(s)	999
BseBI	CCWGG	3 cut(s)	241, 291, 983
BseDI	CCNNGG	4 cut(s)	103, 239, 321, 981
BseGI	GGATG	2 cut(s)	289, 310
BseLI	CCNNNNNNNGG	4 cut(s)	67, 68, 296, 325
BseMII	CTCAG	4 cut(s)	28, 450, 532, 1013
BseNI	ACTGG	1 cut(s)	936
BseRI	GAGGAG	1 cut(s)	566
BseSI	GKGCMC	1 cut(s)	833
BseX3I	CGGCCG	1 cut(s)	273
BseXI	GCAGC	8 cut(s)	84, 87, 238, 376, 701, 814, 1006, 1009
Bsh1236I	CGCG	2 cut(s)	356, 846
Bsh1285I	CGRYCG	1 cut(s)	276
BshFI	GGCC	2 cut(s)	101, 275
BshTI	ACCGGT	1 cut(s)	312
BsiEI	CGRYCG	1 cut(s)	276
BsiHKAI	GWGCWC	1 cut(s)	453
BsiHKCI	CYCGRG	1 cut(s)	452
BsiSI	CCGG	3 cut(s)	272, 276, 313
BslFI	GGGAC	1 cut(s)	951
BslI	CCNNNNNNNGG	4 cut(s)	67, 68, 296, 325
BsmAI	GTCTC	3 cut(s)	394, 426, 449
BsmBI	CGTCTC	1 cut(s)	394
BsmFI	GGGAC	1 cut(s)	951
BsnI	GGCC	2 cut(s)	101, 275
BsoBI	CYCGRG	1 cut(s)	452
Bsp1286I	GDGCHC	2 cut(s)	453, 833
Bsp143I	GATC	3 cut(s)	82, 124, 169
BspACI	CCGC	7 cut(s)	232, 329, 356, 359, 858, 864, 873
BspANI	GGCC	2 cut(s)	101, 275
BspCNI	CTCAG	4 cut(s)	27, 451, 531, 1012
BspFNI	CGCG	2 cut(s)	356, 846
BspHI	TCATGA	1 cut(s)	210
BspLI	GGNNCC	1 cut(s)	317
BspPI	GGATC	1 cut(s)	164
BspQI	GCTCTTC	1 cut(s)	652
BsrFI	RCCGGY	3 cut(s)	271, 275, 312
BsrI	ACTGG	1 cut(s)	936
BssAI	RCCGGY	3 cut(s)	271, 275, 312
BssECI	CCNNGG	4 cut(s)	103, 239, 321, 981
BssMI	GATC	3 cut(s)	82, 124, 169
BssT1I	CCWWGG	2 cut(s)	103, 321
Bst2UI	CCWGG	3 cut(s)	241, 291, 983
Bst4CI	ACNGT	4 cut(s)	388, 612, 959, 965
Bst6I	CTCTTC	5 cut(s)	50, 336, 376, 652, 726
BstC8I	GCNNGC	2 cut(s)	9, 842
BstDEI	CTNAG	6 cut(s)	14, 19, 459, 518, 585, 999
BstF5I	GGATG	2 cut(s)	289, 310
BstFNI	CGCG	2 cut(s)	356, 846
BstHHI	GCGC	2 cut(s)	364, 846
BstKTI	GATC	3 cut(s)	85, 127, 172
BstMAI	GTCTC	3 cut(s)	394, 426, 449
BstMBI	GATC	3 cut(s)	82, 124, 169
BstMCI	CGRYCG	1 cut(s)	276
BstMWI	GCNNNNNNNGC	7 cut(s)	72, 117, 335, 344, 353, 837, 872
BstNI	CCWGG	3 cut(s)	241, 291, 983
BstNSI	RCATGY	2 cut(s)	802, 994
BstSCI	CCNGG	3 cut(s)	239, 289, 981
BstSLI	GKGCMC	1 cut(s)	833
BstUI	CGCG	2 cut(s)	356, 846
BstV1I	GCAGC	8 cut(s)	84, 87, 238, 376, 701, 814, 1006, 1009
BstV2I	GAAGAC	2 cut(s)	221, 357
BstX2I	RGATCY	2 cut(s)	82, 169
BstYI	RGATCY	2 cut(s)	82, 169
BstZI	CGGCCG	1 cut(s)	273
Bsu36I	CCTNAGG	1 cut(s)	999
BsuRI	GGCC	2 cut(s)	101, 275
BtgZI	GCGATG	1 cut(s)	39
BtsCI	GGATG	2 cut(s)	289, 310
BtsI	GCAGTG	1 cut(s)	267
BtsIMutI	CAGTG	3 cut(s)	246, 267, 722
Cac8I	GCNNGC	2 cut(s)	9, 842
CciI	TCATGA	1 cut(s)	210
CfoI	GCGC	2 cut(s)	364, 846
Cfr10I	RCCGGY	3 cut(s)	271, 275, 312
Cfr13I	GGNCC	4 cut(s)	100, 532, 666, 1003
CseI	GACGC	2 cut(s)	362, 835
Csp6I	GTAC	1 cut(s)	700
CspAI	ACCGGT	1 cut(s)	312
CviAII	CATG	5 cut(s)	97, 211, 799, 991, 1026
CviQI	GTAC	1 cut(s)	700
DdeI	CTNAG	6 cut(s)	14, 19, 459, 518, 585, 999
DpnI	GATC	3 cut(s)	84, 126, 171
DpnII	GATC	3 cut(s)	82, 124, 169
DraIII	CACNNNGTG	1 cut(s)	828
EaeI	YGGCCR	1 cut(s)	273
EagI	CGGCCG	1 cut(s)	273
Eam1104I	CTCTTC	5 cut(s)	50, 336, 376, 652, 726
EarI	CTCTTC	5 cut(s)	50, 336, 376, 652, 726
EclXI	CGGCCG	1 cut(s)	273
Eco130I	CCWWGG	2 cut(s)	103, 321
Eco47I	GGWCC	3 cut(s)	532, 666, 1003
Eco52I	CGGCCG	1 cut(s)	273
Eco57I	CTGAAG	1 cut(s)	150
Eco81I	CCTNAGG	1 cut(s)	999
Eco88I	CYCGRG	1 cut(s)	452
EcoRII	CCWGG	3 cut(s)	239, 289, 981
EcoT14I	CCWWGG	2 cut(s)	103, 321
ErhI	CCWWGG	2 cut(s)	103, 321
Esp3I	CGTCTC	1 cut(s)	394
FaeI	CATG	5 cut(s)	100, 214, 802, 994, 1029
FaiI	YATR	6 cut(s)	98, 123, 212, 800, 992, 1027
FalI	AAGNNNNNCTT	4 cut(s)	148, 180, 419, 451
FaqI	GGGAC	1 cut(s)	951
FatI	CATG	5 cut(s)	96, 210, 798, 990, 1025
FauI	CCCGC	1 cut(s)	322
FbaI	TGATCA	1 cut(s)	124
FblI	GTMKAC	1 cut(s)	503
FokI	GGATG	2 cut(s)	296, 317
FspBI	CTAG	2 cut(s)	86, 104
GlaI	GCGC	2 cut(s)	363, 845
HaeIII	GGCC	2 cut(s)	101, 275
HapII	CCGG	3 cut(s)	272, 276, 313
HgaI	GACGC	2 cut(s)	362, 835
HhaI	GCGC	2 cut(s)	364, 846
Hin1II	CATG	5 cut(s)	100, 214, 802, 994, 1029
Hin6I	GCGC	2 cut(s)	362, 844
HinP1I	GCGC	2 cut(s)	362, 844
HincII	GTYRAC	1 cut(s)	504
HindII	GTYRAC	1 cut(s)	504
HinfI	GANTC	3 cut(s)	217, 505, 652
HpaII	CCGG	3 cut(s)	272, 276, 313
HphI	GGTGA	1 cut(s)	844
Hpy166II	GTNNAC	3 cut(s)	310, 504, 626
Hpy188I	TCNGA	4 cut(s)	169, 268, 510, 651
Hpy188III	TCNNGA	8 cut(s)	128, 211, 281, 400, 418, 454, 474, 548
Hpy8I	GTNNAC	3 cut(s)	310, 504, 626
Hpy99I	CGWCG	4 cut(s)	397, 491, 494, 851
HpyAV	CCTTC	5 cut(s)	110, 150, 207, 231, 933
HpyCH4III	ACNGT	4 cut(s)	388, 612, 959, 965
HpyCH4V	TGCA	5 cut(s)	96, 760, 802, 994, 1025
HpyF10VI	GCNNNNNNNGC	7 cut(s)	72, 117, 335, 344, 353, 837, 872
HpyF3I	CTNAG	6 cut(s)	14, 19, 459, 518, 585, 999
Hsp92II	CATG	5 cut(s)	100, 214, 802, 994, 1029
HspAI	GCGC	2 cut(s)	362, 844
Ksp22I	TGATCA	1 cut(s)	124
Kzo9I	GATC	3 cut(s)	82, 124, 169
LguI	GCTCTTC	1 cut(s)	652
LmnI	GCTCC	3 cut(s)	4, 34, 234
Lsp1109I	GCAGC	8 cut(s)	84, 87, 238, 376, 701, 814, 1006, 1009
LweI	GCATC	1 cut(s)	16
MaeI	CTAG	2 cut(s)	86, 104
MaeIII	GTNAC	7 cut(s)	332, 482, 744, 850, 938, 951, 959
MalI	GATC	3 cut(s)	84, 126, 171
MboI	GATC	3 cut(s)	82, 124, 169
MflI	RGATCY	2 cut(s)	82, 169
MhlI	GDGCHC	2 cut(s)	453, 833
MluCI	AATT	1 cut(s)	764
MlyI	GAGTC	2 cut(s)	211, 499
MroXI	GAANNNNTTC	2 cut(s)	160, 314
MseI	TTAA	4 cut(s)	578, 614, 704, 767
MspI	CCGG	3 cut(s)	272, 276, 313
MspR9I	CCNGG	3 cut(s)	241, 291, 983
MvaI	CCWGG	3 cut(s)	241, 291, 983
MvnI	CGCG	2 cut(s)	356, 846
MwoI	GCNNNNNNNGC	7 cut(s)	72, 117, 335, 344, 353, 837, 872
NdeII	GATC	3 cut(s)	82, 124, 169
NlaIII	CATG	5 cut(s)	100, 214, 802, 994, 1029
NlaIV	GGNNCC	1 cut(s)	317
NmuCI	GTSAC	3 cut(s)	482, 850, 959
NspI	RCATGY	2 cut(s)	802, 994
PaeR7I	CTCGAG	1 cut(s)	452
PagI	TCATGA	1 cut(s)	210
PciSI	GCTCTTC	1 cut(s)	652
PdmI	GAANNNNTTC	2 cut(s)	160, 314
PfeI	GAWTC	1 cut(s)	652
PinAI	ACCGGT	1 cut(s)	312
PleI	GAGTC	2 cut(s)	211, 499
PpsI	GAGTC	2 cut(s)	211, 499
Psp6I	CCWGG	3 cut(s)	239, 289, 981
PspGI	CCWGG	3 cut(s)	239, 289, 981
PspN4I	GGNNCC	1 cut(s)	317
PspPI	GGNCC	4 cut(s)	100, 532, 666, 1003
PsuI	RGATCY	2 cut(s)	82, 169
RsaI	GTAC	1 cut(s)	701
RsaNI	GTAC	1 cut(s)	700
SalI	GTCGAC	1 cut(s)	502
SapI	GCTCTTC	1 cut(s)	652
SaqAI	TTAA	4 cut(s)	578, 614, 704, 767
Sau3AI	GATC	3 cut(s)	82, 124, 169
Sau96I	GGNCC	4 cut(s)	100, 532, 666, 1003
ScaI	AGTACT	1 cut(s)	701
SchI	GAGTC	2 cut(s)	211, 499
ScrFI	CCNGG	3 cut(s)	241, 291, 983
SduI	GDGCHC	2 cut(s)	453, 833
SfaNI	GCATC	1 cut(s)	16
Sfr274I	CTCGAG	1 cut(s)	452
SinI	GGWCC	3 cut(s)	532, 666, 1003
SlaI	CTCGAG	1 cut(s)	452
SmlI	CTYRAG	2 cut(s)	452, 548
SmoI	CTYRAG	2 cut(s)	452, 548
Sse9I	AATT	1 cut(s)	764
SsiI	CCGC	7 cut(s)	232, 329, 356, 359, 858, 864, 873
SspMI	CTAG	2 cut(s)	86, 104
StyD4I	CCNGG	3 cut(s)	239, 289, 981
StyI	CCWWGG	2 cut(s)	103, 321
TaaI	ACNGT	4 cut(s)	388, 612, 959, 965
TaqI	TCGA	5 cut(s)	145, 453, 503, 655, 947
TasI	AATT	1 cut(s)	764
TatI	WGTACW	1 cut(s)	699
TauI	GCSGC	2 cut(s)	359, 362
TfiI	GAWTC	1 cut(s)	652
Tru1I	TTAA	4 cut(s)	578, 614, 704, 767
Tru9I	TTAA	4 cut(s)	578, 614, 704, 767
TscAI	CASTG	3 cut(s)	253, 267, 729
TseFI	GTSAC	3 cut(s)	482, 850, 959
TseI	GCWGC	8 cut(s)	72, 75, 226, 364, 714, 802, 994, 1022
Tsp45I	GTSAC	3 cut(s)	482, 850, 959
TspDTI	ATGAA	2 cut(s)	227, 300
TspRI	CASTG	3 cut(s)	253, 267, 729
VpaK11BI	GGWCC	3 cut(s)	532, 666, 1003
XceI	RCATGY	2 cut(s)	802, 994
XhoI	CTCGAG	1 cut(s)	452
XmaJI	CCTAGG	1 cut(s)	103
XmiI	GTMKAC	1 cut(s)	503
XmnI	GAANNNNTTC	2 cut(s)	160, 314
XspI	CTAG	2 cut(s)	86, 104
ZrmI	AGTACT	1 cut(s)	701

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.