Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr12

Orthogroup ID

OG0007908

Physical Location & Seq

Genomic Coordinates Reverse (-)

6297724 .. 6300314

Gene Structure 2591 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD12G1055800.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1023 bp

ATGGAGCTAGCTCTGAGCTTAGGGGATGCTTCAAAGCCGTTTCTCTTTCTCGACAAAACTCAAAAGATGGGCGGTACCATGGATATAGGGTTTTGCATGGGCTTGGGGACTGCGGCTTTCGGTGCTGCAAGATCGGATGAGAGTAGCAGAAAGAGCACCTATGAAGTTTATGATCAGGAGGAGAGAAGAAGAAGTAGGATTTCATCAGATCCACCTCTTCAGCTTAATCTTTTGCCTTCTGCTCCAGTTCCTCGTAGCCACGTTTCTTCTCAGCTTCGCTTCCCATGGCTTACTGATAATCTGGCTGTGTCTGAACCGGCCGGTTCATCAGATGGACCGGGAATAGGTTTGGATGTGAACCGGATGCCGGGAGTGTTGGCCTCGGCTGAGGAGGCCGAAGATGCGGCGGCTCCTCTGTCATCTCCGAACAGCACGGTTTCATCTTTTCAGATGGATTTTGGAATGAGAAATGGAGGAAGATCGAGCAAGAGAGATTTGGATGTTGACGCCGACAGAGCGAGTTCAAGAGCGAGTGATGACGAGGAGAACGGGTCAACTCGGAAGAAACTCAGGCTCTCTAAAGATCAATCGGCTTTTCTTGAAGAGAGCTTCAAAGAGCATAGCACTCTCAATCCTAAGCAAAAACTTGCTTTGGCTAAACAGTTGAATCTTCGTCCACGCCAAGTGGAAGTGTGGTTTCAGAATCGAAGAGCAAGGACAAAGTTGAAGCAGACAGAAGTAGATTGTGAGTACTTAAAGAGATGCTGTGAAACACTGACAGAAGAGAATAGGAGGTTACAGAAGGAACTGCAAGACTTAAGAGCTTTGAAGACCTCTCAGCCTTTCTACATGCAGCTGCCTGCCACCACACTCACCATGTGCCCCTCATGTGAACGCGTGGTCACCACCGCCTCAGCCAACACCTCCACCACCACCACCACCACCAACAACAACCACCACCACCACATAAAGTCTGCTATGAACAACAACAAGCCAAGGTTAAATCCATTTGCTGCTGCTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003700 GO:0006355 GO:0008150 GO:0009889 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0080090 GO:0140110 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

HALZ HD-ZIP_N Homeobox

Protein Analysis

341

Amino Acids

37.67

Weight (kDa)

8.69

Isoelectric Point (pI)

62.43

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
HD-ZIP_N	PF04618	73 - 149	6.3e-06	HD-ZIP protein N terminus
Homeodomain	PF00046	187 - 241	3.2e-15	Homeodomain
HALZ	PF02183	243 - 277	2.2e-10	Homeobox associated leucine zipper

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007908)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G06710 AT5G06710 AT5G06710 AT5G06710
fragaria_vesca	FvH4_6g22050
malus_domestica	MD01G1069700.v1.1 MD12G1055800.v1.1 MD14G1056200.v1.1 MD14G1056300.v1.1
prunus_persica	Prupe.7G079300_v2.0.a1 Prupe.7G079300_v2.0.a1
pyrus_communis	pycom12g04870 pycom14g04600
rosa_chinensis	RchiOBHm_Chr3g0479361
rosa_laevigata	RLG00000023581
rosa_multiflora	Rmu_sc0006763.1_g000001 Rmu_sc0033237.1_g000001
rosa_roxburghii	Rroxscaffold_6G00402380
rosa_rugosa	Rorug03G0174600
rosa_samantha	Rh3AG225900 Rh3BG258600 Rh3CG254200 Rh3DG250000
rosa_wichuraiana	Rw3G020170

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	74
AccB1I	GGYRCC	1 cut(s)	74
AccII	CGCG	1 cut(s)	897
AciI	CCGC	5 cut(s)	72, 113, 404, 407, 909
AclWI	GGATC	1 cut(s)	203
AcoI	YGGCCR	1 cut(s)	318
AcuI	CTGAAG	1 cut(s)	203
AcyI	GRCGYC	1 cut(s)	507
AdeI	CACNNNGTG	1 cut(s)	879
AfaI	GTAC	2 cut(s)	76, 752
AfiI	CCNNNNNNNGG	2 cut(s)	344, 367
AflII	CTTAAG	1 cut(s)	817
AflIII	ACRYGT	1 cut(s)	895
AgsI	TTSAA	7 cut(s)	33, 525, 602, 613, 667, 727, 829
AluBI	AGCT	8 cut(s)	7, 11, 18, 223, 274, 609, 824, 856
AluI	AGCT	8 cut(s)	7, 11, 18, 223, 274, 609, 824, 856
Alw21I	GWGCWC	1 cut(s)	158
AlwI	GGATC	1 cut(s)	203
AoxI	GGCC	3 cut(s)	318, 378, 393
ApeKI	GCWGC	5 cut(s)	125, 853, 856, 1013, 1016
Asp718I	GGTACC	1 cut(s)	74
AspS9I	GGNCC	1 cut(s)	335
AsuC2I	CCSGG	2 cut(s)	339, 369
AsuHPI	GGTGA	2 cut(s)	865, 895
AsuNHI	GCTAGC	1 cut(s)	7
AvaII	GGWCC	1 cut(s)	335
BaeGI	GKGCMC	1 cut(s)	884
BanI	GGYRCC	1 cut(s)	74
BbsI	GAAGAC	1 cut(s)	836
Bbv12I	GWGCWC	1 cut(s)	158
BbvCI	CCTCAGC	2 cut(s)	387, 913
BbvI	GCAGC	5 cut(s)	112, 843, 865, 1000, 1003
BccI	CCATC	3 cut(s)	61, 326, 445
BceAI	ACGGC	1 cut(s)	22
BclI	TGATCA	1 cut(s)	172
BcnI	CCSGG	2 cut(s)	339, 369
BfaI	CTAG	1 cut(s)	8
BfrI	CTTAAG	1 cut(s)	817
BisI	GCNGC	8 cut(s)	114, 126, 405, 408, 854, 857, 1014, 1017
BlsI	GCNGC	8 cut(s)	115, 127, 406, 409, 855, 858, 1015, 1018
BmcAI	AGTACT	1 cut(s)	752
Bme1390I	CCNGG	2 cut(s)	339, 369
Bme18I	GGWCC	1 cut(s)	335
BmgT120I	GGNCC	1 cut(s)	335
BmiI	GGNNCC	2 cut(s)	76, 411
BmrFI	CCNGG	2 cut(s)	339, 369
BmsI	GCATC	4 cut(s)	16, 354, 391, 752
BmtI	GCTAGC	1 cut(s)	11
BpiI	GAAGAC	1 cut(s)	836
BpmI	CTGGAG	1 cut(s)	228
Bpu10I	CCTNAGC	4 cut(s)	19, 387, 636, 913
BpuMI	CCSGG	2 cut(s)	339, 369
BsaHI	GRCGYC	1 cut(s)	507
BsaJI	CCNNGG	4 cut(s)	78, 284, 381, 995
BsaWI	WCCGGW	1 cut(s)	360
BsaXI	ACNNNNNCTCC	2 cut(s)	536, 566
Bsc4I	CCNNNNNNNGG	2 cut(s)	344, 367
Bse118I	RCCGGY	2 cut(s)	316, 320
Bse1I	ACTGG	1 cut(s)	245
BseDI	CCNNGG	4 cut(s)	78, 284, 381, 995
BseGI	GGATG	5 cut(s)	31, 142, 358, 369, 505
BseLI	CCNNNNNNNGG	2 cut(s)	344, 367
BseMII	CTCAG	6 cut(s)	5, 284, 378, 583, 851, 927
BseNI	ACTGG	1 cut(s)	245
BseRI	GAGGAG	4 cut(s)	194, 402, 404, 557
BseSI	GKGCMC	1 cut(s)	884
BseX3I	CGGCCG	1 cut(s)	318
BseXI	GCAGC	5 cut(s)	112, 843, 865, 1000, 1003
Bsh1236I	CGCG	1 cut(s)	897
Bsh1285I	CGRYCG	1 cut(s)	321
BshFI	GGCC	3 cut(s)	320, 380, 395
BshNI	GGYRCC	1 cut(s)	74
BsiEI	CGRYCG	1 cut(s)	321
BsiHKAI	GWGCWC	1 cut(s)	158
BsiSI	CCGG	5 cut(s)	317, 321, 338, 361, 368
BslFI	GGGAC	1 cut(s)	121
BslI	CCNNNNNNNGG	2 cut(s)	344, 367
BsmFI	GGGAC	1 cut(s)	121
BsnI	GGCC	3 cut(s)	320, 380, 395
Bsp1286I	GDGCHC	2 cut(s)	158, 884
Bsp143I	GATC	5 cut(s)	131, 172, 208, 479, 583
Bsp19I	CCATGG	2 cut(s)	78, 284
BspACI	CCGC	5 cut(s)	72, 113, 404, 407, 909
BspANI	GGCC	3 cut(s)	320, 380, 395
BspCNI	CTCAG	6 cut(s)	6, 283, 379, 582, 850, 926
BspFNI	CGCG	1 cut(s)	897
BspLI	GGNNCC	2 cut(s)	76, 411
BspOI	GCTAGC	1 cut(s)	11
BspPI	GGATC	1 cut(s)	203
BspQI	GCTCTTC	1 cut(s)	703
BspT107I	GGYRCC	1 cut(s)	74
BspTI	CTTAAG	1 cut(s)	817
BsrFI	RCCGGY	2 cut(s)	316, 320
BsrI	ACTGG	1 cut(s)	245
BssAI	RCCGGY	2 cut(s)	316, 320
BssECI	CCNNGG	4 cut(s)	78, 284, 381, 995
BssMI	GATC	5 cut(s)	131, 172, 208, 479, 583
BssNI	GRCGYC	1 cut(s)	507
BssT1I	CCWWGG	3 cut(s)	78, 284, 995
Bst4CI	ACNGT	2 cut(s)	436, 663
Bst6I	CTCTTC	4 cut(s)	222, 597, 703, 777
BstACI	GRCGYC	1 cut(s)	507
BstAFI	CTTAAG	1 cut(s)	817
BstC8I	GCNNGC	2 cut(s)	9, 861
BstDEI	CTNAG	8 cut(s)	14, 19, 270, 387, 569, 636, 837, 913
BstDSI	CCRYGG	2 cut(s)	78, 284
BstEII	GGTNACC	1 cut(s)	901
BstF5I	GGATG	5 cut(s)	31, 142, 358, 369, 505
BstFNI	CGCG	1 cut(s)	897
BstKTI	GATC	5 cut(s)	134, 175, 211, 482, 586
BstMBI	GATC	5 cut(s)	131, 172, 208, 479, 583
BstMCI	CGRYCG	1 cut(s)	321
BstMWI	GCNNNNNNNGC	5 cut(s)	122, 153, 392, 401, 515
BstNSI	RCATGY	1 cut(s)	853
BstPI	GGTNACC	1 cut(s)	901
BstSCI	CCNGG	2 cut(s)	337, 367
BstSLI	GKGCMC	1 cut(s)	884
BstUI	CGCG	1 cut(s)	897
BstV1I	GCAGC	5 cut(s)	112, 843, 865, 1000, 1003
BstV2I	GAAGAC	1 cut(s)	836
BstX2I	RGATCY	1 cut(s)	208
BstYI	RGATCY	1 cut(s)	208
BstZI	CGGCCG	1 cut(s)	318
BsuRI	GGCC	3 cut(s)	320, 380, 395
BtgI	CCRYGG	2 cut(s)	78, 284
BtsCI	GGATG	5 cut(s)	31, 142, 358, 369, 505
BtsIMutI	CAGTG	1 cut(s)	773
Cac8I	GCNNGC	2 cut(s)	9, 861
Cfr10I	RCCGGY	2 cut(s)	316, 320
Cfr13I	GGNCC	1 cut(s)	335
CseI	GACGC	1 cut(s)	515
Csp6I	GTAC	2 cut(s)	75, 751
CviAII	CATG	6 cut(s)	79, 97, 285, 850, 877, 888
CviQI	GTAC	2 cut(s)	75, 751
DdeI	CTNAG	8 cut(s)	14, 19, 270, 387, 569, 636, 837, 913
DpnI	GATC	5 cut(s)	133, 174, 210, 481, 585
DpnII	GATC	5 cut(s)	131, 172, 208, 479, 583
DraIII	CACNNNGTG	1 cut(s)	879
EaeI	YGGCCR	1 cut(s)	318
EagI	CGGCCG	1 cut(s)	318
Eam1104I	CTCTTC	4 cut(s)	222, 597, 703, 777
EarI	CTCTTC	4 cut(s)	222, 597, 703, 777
EclXI	CGGCCG	1 cut(s)	318
Eco130I	CCWWGG	3 cut(s)	78, 284, 995
Eco47I	GGWCC	1 cut(s)	335
Eco52I	CGGCCG	1 cut(s)	318
Eco57I	CTGAAG	1 cut(s)	203
Eco91I	GGTNACC	1 cut(s)	901
EcoO65I	GGTNACC	1 cut(s)	901
EcoT14I	CCWWGG	3 cut(s)	78, 284, 995
ErhI	CCWWGG	3 cut(s)	78, 284, 995
FaeI	CATG	6 cut(s)	82, 100, 288, 853, 880, 891
FaqI	GGGAC	1 cut(s)	121
FatI	CATG	6 cut(s)	78, 96, 284, 849, 876, 887
FbaI	TGATCA	1 cut(s)	172
Fnu4HI	GCNGC	8 cut(s)	114, 126, 405, 408, 854, 857, 1014, 1017
FokI	GGATG	5 cut(s)	38, 149, 365, 376, 512
Fsp4HI	GCNGC	8 cut(s)	114, 126, 405, 408, 854, 857, 1014, 1017
FspBI	CTAG	1 cut(s)	8
GluI	GCNGC	8 cut(s)	114, 126, 405, 408, 854, 857, 1014, 1017
GsuI	CTGGAG	1 cut(s)	228
HaeIII	GGCC	3 cut(s)	320, 380, 395
HapII	CCGG	5 cut(s)	317, 321, 338, 361, 368
HgaI	GACGC	1 cut(s)	515
Hin1I	GRCGYC	1 cut(s)	507
Hin1II	CATG	6 cut(s)	82, 100, 288, 853, 880, 891
HincII	GTYRAC	2 cut(s)	505, 555
HindII	GTYRAC	2 cut(s)	505, 555
HinfI	GANTC	2 cut(s)	667, 703
HpaII	CCGG	5 cut(s)	317, 321, 338, 361, 368
HphI	GGTGA	2 cut(s)	865, 895
Hpy166II	GTNNAC	5 cut(s)	358, 505, 555, 677, 893
Hpy188I	TCNGA	9 cut(s)	15, 136, 208, 313, 331, 426, 450, 561, 702
Hpy188III	TCNNGA	4 cut(s)	50, 176, 525, 599
Hpy8I	GTNNAC	5 cut(s)	358, 505, 555, 677, 893
HpyAV	CCTTC	2 cut(s)	246, 796
HpyCH4III	ACNGT	2 cut(s)	436, 663
HpyCH4IV	ACGT	1 cut(s)	261
HpyCH4V	TGCA	4 cut(s)	96, 128, 811, 853
HpyF10VI	GCNNNNNNNGC	5 cut(s)	122, 153, 392, 401, 515
HpyF3I	CTNAG	8 cut(s)	14, 19, 270, 387, 569, 636, 837, 913
HpySE526I	ACGT	1 cut(s)	261
Hsp92I	GRCGYC	1 cut(s)	507
Hsp92II	CATG	6 cut(s)	82, 100, 288, 853, 880, 891
KpnI	GGTACC	1 cut(s)	78
Ksp22I	TGATCA	1 cut(s)	172
Kzo9I	GATC	5 cut(s)	131, 172, 208, 479, 583
LguI	GCTCTTC	1 cut(s)	703
LmnI	GCTCC	3 cut(s)	4, 247, 415
Lsp1109I	GCAGC	5 cut(s)	112, 843, 865, 1000, 1003
LweI	GCATC	4 cut(s)	16, 354, 391, 752
MaeI	CTAG	1 cut(s)	8
MaeII	ACGT	1 cut(s)	261
MaeIII	GTNAC	2 cut(s)	795, 901
MalI	GATC	5 cut(s)	133, 174, 210, 481, 585
MboI	GATC	5 cut(s)	131, 172, 208, 479, 583
MflI	RGATCY	1 cut(s)	208
MhlI	GDGCHC	2 cut(s)	158, 884
MluI	ACGCGT	1 cut(s)	895
MseI	TTAA	5 cut(s)	225, 755, 818, 1001, 1021
MspA1I	CMGCKG	1 cut(s)	856
MspCI	CTTAAG	1 cut(s)	817
MspI	CCGG	5 cut(s)	317, 321, 338, 361, 368
MspR9I	CCNGG	2 cut(s)	339, 369
MvnI	CGCG	1 cut(s)	897
MwoI	GCNNNNNNNGC	5 cut(s)	122, 153, 392, 401, 515
NciI	CCSGG	2 cut(s)	339, 369
NcoI	CCATGG	2 cut(s)	78, 284
NdeII	GATC	5 cut(s)	131, 172, 208, 479, 583
NheI	GCTAGC	1 cut(s)	7
NlaIII	CATG	6 cut(s)	82, 100, 288, 853, 880, 891
NlaIV	GGNNCC	2 cut(s)	76, 411
NmeAIII	GCCGAG	1 cut(s)	362
NmuCI	GTSAC	1 cut(s)	901
NspI	RCATGY	1 cut(s)	853
PciSI	GCTCTTC	1 cut(s)	703
PfeI	GAWTC	2 cut(s)	667, 703
PkrI	GCNGC	8 cut(s)	115, 127, 406, 409, 855, 858, 1015, 1018
PspEI	GGTNACC	1 cut(s)	901
PspN4I	GGNNCC	2 cut(s)	76, 411
PspPI	GGNCC	1 cut(s)	335
PsuI	RGATCY	1 cut(s)	208
PvuII	CAGCTG	1 cut(s)	856
RsaI	GTAC	2 cut(s)	76, 752
RsaNI	GTAC	2 cut(s)	75, 751
SapI	GCTCTTC	1 cut(s)	703
SaqAI	TTAA	5 cut(s)	225, 755, 818, 1001, 1021
SatI	GCNGC	8 cut(s)	114, 126, 405, 408, 854, 857, 1014, 1017
Sau3AI	GATC	5 cut(s)	131, 172, 208, 479, 583
Sau96I	GGNCC	1 cut(s)	335
ScaI	AGTACT	1 cut(s)	752
ScrFI	CCNGG	2 cut(s)	339, 369
SduI	GDGCHC	2 cut(s)	158, 884
SfaNI	GCATC	4 cut(s)	16, 354, 391, 752
SinI	GGWCC	1 cut(s)	335
SmlI	CTYRAG	1 cut(s)	817
SmoI	CTYRAG	1 cut(s)	817
SsiI	CCGC	5 cut(s)	72, 113, 404, 407, 909
SspMI	CTAG	1 cut(s)	8
StyD4I	CCNGG	2 cut(s)	337, 367
StyI	CCWWGG	3 cut(s)	78, 284, 995
TaaI	ACNGT	2 cut(s)	436, 663
TaiI	ACGT	1 cut(s)	264
TaqI	TCGA	3 cut(s)	51, 482, 706
TatI	WGTACW	1 cut(s)	750
TauI	GCSGC	3 cut(s)	116, 407, 410
TfiI	GAWTC	2 cut(s)	667, 703
Tru1I	TTAA	5 cut(s)	225, 755, 818, 1001, 1021
Tru9I	TTAA	5 cut(s)	225, 755, 818, 1001, 1021
TscAI	CASTG	1 cut(s)	780
TseFI	GTSAC	1 cut(s)	901
TseI	GCWGC	5 cut(s)	125, 853, 856, 1013, 1016
Tsp45I	GTSAC	1 cut(s)	901
TspDTI	ATGAA	5 cut(s)	177, 192, 315, 429, 995
TspRI	CASTG	1 cut(s)	780
Vha464I	CTTAAG	1 cut(s)	817
VpaK11BI	GGWCC	1 cut(s)	335
XceI	RCATGY	1 cut(s)	853
XspI	CTAG	1 cut(s)	8
ZrmI	AGTACT	1 cut(s)	752

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.