Rorug03G0174600

Homeobox-leucine zipper protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000003
OG0007908
Physical Location & Seq
Forward (+)
14759267 .. 14760669
1403 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug03G0174600.1

Sequence Viewer

Length: 738 bp
ATGAAGATGAACACCCAAGTACTCCTCAGCCTCACCTTGGTCATATTCTTCGCAGGTGCACATGCGGCTACGATCACCTTCACCAACAACTGCCCCTACACCGTATGGCCAGGAACCCTCACCTCCAACCAACAACCCCAACTATCCACCACCGGCTTCGAGCTAGCACAGGGAGCCAAAAAAGACGTCACCACTCCAGTTCCATGGAATGGCCGCTTCTGGGCCCGAACCAGATGCTCCACCGCTGCCGACGGAAAGTTCTCCTGCGCCACAGCTGACTGCGGCTCCGGCCAGGTCACATGCAACGGCAACGGCGCAGTCCCACCTGCAACTCTAGTCGAAATCAACATCGCAGCTGACGGCGGTCAGGACTTCTTCGACGTCAGCCTGGTCGACGGCTTCAACTTGCCCATGTCCGTGGCCCCGCAGGGTGGAACCGGCGACTGCAAGCCCTCTTCATGCCCGGCCGACGTGAATGCCGTCTGTCCTGCGGAGCTGCAAGTGAAGGCCGACGACGGGACCGTGATTGCCTGCAAGAGCGCGTGTTTGGCGTTCAACGAGCCAAAGTACTGTTGCACACCTCCCAATAACACTCCCGAAACATGTCCTCCCACAAACTACTCTCAGATCTTTAAGGAACAGTGCCCTCTGGCTTATAGCTACGCTTACGATGACAAGAGCAGCACGTTTACATGCTTCGGTGGACCTAACTACGCCATTACATTCTGTCCGGCATGA

Protein Analysis

245

Amino Acids

25.83

Weight (kDa)

4.64

Isoelectric Point (pI)

40.14

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Thaumatin PF00314 29 - 244 3.3e-80 Thaumatin family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 2 cut(s) 44, 334
AatII GACGTC 2 cut(s) 189, 384
Acc36I ACCTGC 2 cut(s) 44, 334
AccB7I CCANNNNNTGG 1 cut(s) 209
AccI GTMKAC 1 cut(s) 393
AccII CGCG 1 cut(s) 542
AciI CCGC 7 cut(s) 65, 214, 243, 282, 363, 425, 491
AcoI YGGCCR 4 cut(s) 107, 211, 289, 465
AcyI GRCGYC 2 cut(s) 186, 381
AfaI GTAC 2 cut(s) 21, 569
AfiI CCNNNNNNNGG 5 cut(s) 37, 209, 220, 431, 516
AflIII ACRYGT 1 cut(s) 602
AgsI TTSAA 2 cut(s) 403, 556
AjiI CACGTC 1 cut(s) 472
AjnI CCWGG 3 cut(s) 109, 291, 387
AluBI AGCT 5 cut(s) 163, 275, 356, 496, 660
AluI AGCT 5 cut(s) 163, 275, 356, 496, 660
Alw21I GWGCWC 1 cut(s) 61
Alw44I GTGCAC 1 cut(s) 57
AoxI GGCC 7 cut(s) 107, 211, 222, 289, 420, 465, 507
ApaI GGGCCC 1 cut(s) 226
ApaLI GTGCAC 1 cut(s) 57
ApeKI GCWGC 4 cut(s) 245, 353, 496, 681
ArsI GACNNNNNNTTYG 2 cut(s) 171, 203
AspLEI GCGC 3 cut(s) 269, 317, 542
AspS9I GGNCC 5 cut(s) 222, 223, 421, 519, 704
AsuC2I CCSGG 1 cut(s) 464
AsuHPI GGTGA 5 cut(s) 25, 67, 73, 112, 181
AsuNHI GCTAGC 1 cut(s) 163
AvaII GGWCC 2 cut(s) 519, 704
BaeGI GKGCMC 3 cut(s) 61, 226, 647
BalI TGGCCA 1 cut(s) 109
BanII GRGCYC 1 cut(s) 226
Bbv12I GWGCWC 1 cut(s) 61
BbvCI CCTCAGC 1 cut(s) 26
BbvI GCAGC 4 cut(s) 232, 365, 483, 693
BceAI ACGGC 5 cut(s) 322, 328, 376, 412, 464
BcgI CGANNNNNNTGC 4 cut(s) 216, 250, 458, 492
BciT130I CCWGG 3 cut(s) 111, 293, 389
BcnI CCSGG 1 cut(s) 464
BfaI CTAG 2 cut(s) 164, 335
BfuAI ACCTGC 2 cut(s) 44, 334
BglII AGATCT 1 cut(s) 627
BisI GCNGC 7 cut(s) 66, 214, 246, 283, 354, 497, 682
BlsI GCNGC 7 cut(s) 67, 215, 247, 284, 355, 498, 683
BmcAI AGTACT 2 cut(s) 21, 569
Bme1390I CCNGG 4 cut(s) 111, 293, 389, 464
Bme18I GGWCC 2 cut(s) 519, 704
BmgBI CACGTC 1 cut(s) 472
BmgT120I GGNCC 5 cut(s) 222, 223, 421, 519, 704
BmiI GGNNCC 7 cut(s) 115, 175, 224, 286, 423, 436, 520
BmrFI CCNGG 4 cut(s) 111, 293, 389, 464
BmsI GCATC 1 cut(s) 224
BmtI GCTAGC 1 cut(s) 167
BoxI GACNNNNGTC 1 cut(s) 363
BpmI CTGGAG 1 cut(s) 180
Bpu10I CCTNAGC 1 cut(s) 26
BpuMI CCSGG 1 cut(s) 464
BsaHI GRCGYC 2 cut(s) 186, 381
BsaJI CCNNGG 3 cut(s) 36, 203, 417
BsaXI ACNNNNNCTCC 4 cut(s) 269, 299, 592, 622
Bsc4I CCNNNNNNNGG 5 cut(s) 37, 209, 220, 431, 516
Bse118I RCCGGY 2 cut(s) 152, 437
Bse1I ACTGG 1 cut(s) 197
BseBI CCWGG 3 cut(s) 111, 293, 389
BseDI CCNNGG 3 cut(s) 36, 203, 417
BseLI CCNNNNNNNGG 5 cut(s) 37, 209, 220, 431, 516
BseMII CTCAG 2 cut(s) 40, 638
BseNI ACTGG 1 cut(s) 197
BseRI GAGGAG 1 cut(s) 14
BseSI GKGCMC 3 cut(s) 61, 226, 647
BseX3I CGGCCG 1 cut(s) 465
BseXI GCAGC 4 cut(s) 232, 365, 483, 693
Bsh1236I CGCG 1 cut(s) 542
Bsh1285I CGRYCG 1 cut(s) 468
BshFI GGCC 7 cut(s) 109, 213, 224, 291, 422, 467, 509
BsiEI CGRYCG 1 cut(s) 468
BsiHKAI GWGCWC 1 cut(s) 61
BsiSI CCGG 5 cut(s) 153, 288, 438, 464, 731
BslFI GGGAC 2 cut(s) 305, 532
BslI CCNNNNNNNGG 5 cut(s) 37, 209, 220, 431, 516
BsmFI GGGAC 2 cut(s) 305, 532
BsmI GAATGC 1 cut(s) 481
BsnI GGCC 7 cut(s) 109, 213, 224, 291, 422, 467, 509
Bsp120I GGGCCC 1 cut(s) 222
Bsp1286I GDGCHC 3 cut(s) 61, 226, 647
Bsp143I GATC 2 cut(s) 72, 627
Bsp19I CCATGG 1 cut(s) 203
BspACI CCGC 7 cut(s) 65, 214, 243, 282, 363, 425, 491
BspANI GGCC 7 cut(s) 109, 213, 224, 291, 422, 467, 509
BspCNI CTCAG 2 cut(s) 39, 637
BspFNI CGCG 1 cut(s) 542
BspLI GGNNCC 7 cut(s) 115, 175, 224, 286, 423, 436, 520
BspMI ACCTGC 2 cut(s) 44, 334
BspOI GCTAGC 1 cut(s) 167
BsrFI RCCGGY 2 cut(s) 152, 437
BsrI ACTGG 1 cut(s) 197
BssAI RCCGGY 2 cut(s) 152, 437
BssECI CCNNGG 3 cut(s) 36, 203, 417
BssMI GATC 2 cut(s) 72, 627
BssNI GRCGYC 2 cut(s) 186, 381
BssT1I CCWWGG 2 cut(s) 36, 203
Bst2UI CCWGG 3 cut(s) 111, 293, 389
Bst4CI ACNGT 4 cut(s) 103, 523, 572, 642
Bst6I CTCTTC 1 cut(s) 460
BstACI GRCGYC 2 cut(s) 186, 381
BstC8I GCNNGC 3 cut(s) 165, 449, 532
BstDEI CTNAG 2 cut(s) 26, 624
BstDSI CCRYGG 2 cut(s) 203, 417
BstFNI CGCG 1 cut(s) 542
BstHHI GCGC 3 cut(s) 269, 317, 542
BstKTI GATC 2 cut(s) 75, 630
BstMBI GATC 2 cut(s) 72, 627
BstMCI CGRYCG 1 cut(s) 468
BstMWI GCNNNNNNNGC 4 cut(s) 65, 173, 288, 548
BstNI CCWGG 3 cut(s) 111, 293, 389
BstNSI RCATGY 4 cut(s) 65, 303, 606, 696
BstPAI GACNNNNGTC 1 cut(s) 363
BstSCI CCNGG 4 cut(s) 109, 291, 387, 462
BstSLI GKGCMC 3 cut(s) 61, 226, 647
BstUI CGCG 1 cut(s) 542
BstV1I GCAGC 4 cut(s) 232, 365, 483, 693
BstX2I RGATCY 1 cut(s) 627
BstXI CCANNNNNNTGG 2 cut(s) 204, 418
BstYI RGATCY 1 cut(s) 627
BstZI CGGCCG 1 cut(s) 465
BsuRI GGCC 7 cut(s) 109, 213, 224, 291, 422, 467, 509
BtgI CCRYGG 2 cut(s) 203, 417
BtgZI GCGATG 1 cut(s) 334
BtrI CACGTC 1 cut(s) 472
BtsIMutI CAGTG 1 cut(s) 647
BveI ACCTGC 2 cut(s) 44, 334
Cac8I GCNNGC 3 cut(s) 165, 449, 532
CfoI GCGC 3 cut(s) 269, 317, 542
Cfr10I RCCGGY 2 cut(s) 152, 437
Cfr13I GGNCC 5 cut(s) 222, 223, 421, 519, 704
Csp6I GTAC 2 cut(s) 20, 568
CviAII CATG 8 cut(s) 62, 204, 300, 412, 459, 603, 693, 735
CviQI GTAC 2 cut(s) 20, 568
DdeI CTNAG 2 cut(s) 26, 624
DpnI GATC 2 cut(s) 74, 629
DpnII GATC 2 cut(s) 72, 627
EaeI YGGCCR 4 cut(s) 107, 211, 289, 465
EagI CGGCCG 1 cut(s) 465
Eam1104I CTCTTC 1 cut(s) 460
EarI CTCTTC 1 cut(s) 460
EclXI CGGCCG 1 cut(s) 465
Eco130I CCWWGG 2 cut(s) 36, 203
Eco24I GRGCYC 1 cut(s) 226
Eco47I GGWCC 2 cut(s) 519, 704
Eco52I CGGCCG 1 cut(s) 465
EcoRII CCWGG 3 cut(s) 109, 291, 387
EcoT14I CCWWGG 2 cut(s) 36, 203
EcoT38I GRGCYC 1 cut(s) 226
ErhI CCWWGG 2 cut(s) 36, 203
FaeI CATG 8 cut(s) 65, 207, 303, 415, 462, 606, 696, 738
FaqI GGGAC 2 cut(s) 305, 532
FatI CATG 8 cut(s) 61, 203, 299, 411, 458, 602, 692, 734
FauI CCCGC 1 cut(s) 432
FblI GTMKAC 1 cut(s) 393
Fnu4HI GCNGC 7 cut(s) 66, 214, 246, 283, 354, 497, 682
FriOI GRGCYC 1 cut(s) 226
Fsp4HI GCNGC 7 cut(s) 66, 214, 246, 283, 354, 497, 682
FspBI CTAG 2 cut(s) 164, 335
GlaI GCGC 3 cut(s) 268, 316, 541
GluI GCNGC 7 cut(s) 66, 214, 246, 283, 354, 497, 682
GsuI CTGGAG 1 cut(s) 180
HaeIII GGCC 7 cut(s) 109, 213, 224, 291, 422, 467, 509
HapII CCGG 5 cut(s) 153, 288, 438, 464, 731
HhaI GCGC 3 cut(s) 269, 317, 542
Hin1I GRCGYC 2 cut(s) 186, 381
Hin1II CATG 8 cut(s) 65, 207, 303, 415, 462, 606, 696, 738
Hin6I GCGC 3 cut(s) 267, 315, 540
HinP1I GCGC 3 cut(s) 267, 315, 540
HincII GTYRAC 1 cut(s) 394
HindII GTYRAC 1 cut(s) 394
HpaII CCGG 5 cut(s) 153, 288, 438, 464, 731
HphI GGTGA 5 cut(s) 25, 67, 73, 112, 181
Hpy166II GTNNAC 4 cut(s) 59, 394, 690, 704
Hpy188I TCNGA 1 cut(s) 627
Hpy188III TCNNGA 2 cut(s) 368, 596
Hpy8I GTNNAC 4 cut(s) 59, 394, 690, 704
Hpy99I CGWCG 6 cut(s) 254, 383, 398, 473, 515, 518
HpyAV CCTTC 2 cut(s) 88, 499
HpyCH4III ACNGT 4 cut(s) 103, 523, 572, 642
HpyCH4IV ACGT 4 cut(s) 186, 381, 471, 686
HpyCH4V TGCA 7 cut(s) 59, 303, 329, 447, 499, 534, 576
HpyF10VI GCNNNNNNNGC 4 cut(s) 65, 173, 288, 548
HpyF3I CTNAG 2 cut(s) 26, 624
HpySE526I ACGT 4 cut(s) 186, 381, 471, 686
Hsp92I GRCGYC 2 cut(s) 186, 381
Hsp92II CATG 8 cut(s) 65, 207, 303, 415, 462, 606, 696, 738
HspAI GCGC 3 cut(s) 267, 315, 540
Kzo9I GATC 2 cut(s) 72, 627
LmnI GCTCC 4 cut(s) 173, 242, 290, 493
Lsp1109I GCAGC 4 cut(s) 232, 365, 483, 693
LweI GCATC 1 cut(s) 224
MaeI CTAG 2 cut(s) 164, 335
MaeII ACGT 4 cut(s) 186, 381, 471, 686
MaeIII GTNAC 2 cut(s) 187, 295
MalI GATC 2 cut(s) 74, 629
MboI GATC 2 cut(s) 72, 627
MboII GAAGA 4 cut(s) 16, 40, 367, 447
MflI RGATCY 1 cut(s) 627
MhlI GDGCHC 3 cut(s) 61, 226, 647
MlsI TGGCCA 1 cut(s) 109
MluNI TGGCCA 1 cut(s) 109
MmeI TCCRAC 1 cut(s) 150
MnlI CCTC 8 cut(s) 35, 41, 128, 133, 463, 591, 618, 657
Mox20I TGGCCA 1 cut(s) 109
MscI TGGCCA 1 cut(s) 109
MseI TTAA 1 cut(s) 633
MslI CAYNNNNRTG 1 cut(s) 416
Msp20I TGGCCA 1 cut(s) 109
MspA1I CMGCKG 3 cut(s) 245, 275, 356
MspI CCGG 5 cut(s) 153, 288, 438, 464, 731
MspR9I CCNGG 4 cut(s) 111, 293, 389, 464
Mva1269I GAATGC 1 cut(s) 481
MvaI CCWGG 3 cut(s) 111, 293, 389
MvnI CGCG 1 cut(s) 542
MwoI GCNNNNNNNGC 4 cut(s) 65, 173, 288, 548
NciI CCSGG 1 cut(s) 464
NcoI CCATGG 1 cut(s) 203
NdeII GATC 2 cut(s) 72, 627
NheI GCTAGC 1 cut(s) 163
NlaIII CATG 8 cut(s) 65, 207, 303, 415, 462, 606, 696, 738
NlaIV GGNNCC 7 cut(s) 115, 175, 224, 286, 423, 436, 520
NmuCI GTSAC 2 cut(s) 187, 295
NspI RCATGY 4 cut(s) 65, 303, 606, 696
PaqCI CACCTGC 2 cut(s) 44, 334
PciI ACATGT 1 cut(s) 602
PcsI WCGNNNNNNNCGW 2 cut(s) 477, 519
PctI GAATGC 1 cut(s) 481
PflMI CCANNNNNTGG 1 cut(s) 209
PkrI GCNGC 7 cut(s) 67, 215, 247, 284, 355, 498, 683
PscI ACATGT 1 cut(s) 602
PshAI GACNNNNGTC 1 cut(s) 363
Psp6I CCWGG 3 cut(s) 109, 291, 387
PspGI CCWGG 3 cut(s) 109, 291, 387
PspN4I GGNNCC 7 cut(s) 115, 175, 224, 286, 423, 436, 520
PspOMI GGGCCC 1 cut(s) 222
PspPI GGNCC 5 cut(s) 222, 223, 421, 519, 704
PsuI RGATCY 1 cut(s) 627
PvuII CAGCTG 2 cut(s) 275, 356
RsaI GTAC 2 cut(s) 21, 569
RsaNI GTAC 2 cut(s) 20, 568
RseI CAYNNNNRTG 1 cut(s) 416
SalI GTCGAC 1 cut(s) 392
SaqAI TTAA 1 cut(s) 633
SatI GCNGC 7 cut(s) 66, 214, 246, 283, 354, 497, 682
Sau3AI GATC 2 cut(s) 72, 627
Sau96I GGNCC 5 cut(s) 222, 223, 421, 519, 704
ScaI AGTACT 2 cut(s) 21, 569
ScrFI CCNGG 4 cut(s) 111, 293, 389, 464
SduI GDGCHC 3 cut(s) 61, 226, 647
SfaNI GCATC 1 cut(s) 224
SinI GGWCC 2 cut(s) 519, 704
SmiMI CAYNNNNRTG 1 cut(s) 416
SsiI CCGC 7 cut(s) 65, 214, 243, 282, 363, 425, 491
SspMI CTAG 2 cut(s) 164, 335
StyD4I CCNGG 4 cut(s) 109, 291, 387, 462
StyI CCWWGG 2 cut(s) 36, 203
TaaI ACNGT 4 cut(s) 103, 523, 572, 642
TaiI ACGT 4 cut(s) 189, 384, 474, 689
TaqI TCGA 4 cut(s) 159, 339, 378, 393
TatI WGTACW 2 cut(s) 19, 567
TauI GCSGC 3 cut(s) 68, 216, 285
Tru1I TTAA 1 cut(s) 633
Tru9I TTAA 1 cut(s) 633
TscAI CASTG 1 cut(s) 647
TseFI GTSAC 2 cut(s) 187, 295
TseI GCWGC 4 cut(s) 245, 353, 496, 681
Tsp45I GTSAC 2 cut(s) 187, 295
TspDTI ATGAA 3 cut(s) 17, 23, 447
TspGWI ACGGA 2 cut(s) 267, 406
TspRI CASTG 1 cut(s) 647
Van91I CCANNNNNTGG 1 cut(s) 209
VneI GTGCAC 1 cut(s) 57
VpaK11BI GGWCC 2 cut(s) 519, 704
XceI RCATGY 4 cut(s) 65, 303, 606, 696
XmiI GTMKAC 1 cut(s) 393
XspI CTAG 2 cut(s) 164, 335
ZraI GACGTC 2 cut(s) 187, 382
ZrmI AGTACT 2 cut(s) 21, 569
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.