Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp07

Orthogroup ID

OG0007908

Physical Location & Seq

Genomic Coordinates Forward (+)

11503419 .. 11506087

Gene Structure 2669 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.7G079300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1041 bp

ATGGAGCTGGCTCTGAGTTTGGGTGATGCTTCAAAGCCATTTCTTTTCCTTGACAAAGCCCCAAAGATGGGTAGCAAAGATCTAGGGTTTTGCATGGGCTTGGGAGGTGCTTTCAGTGCAAGATCAGACGAGAGTAGAGAGAGTATCCATGAAGGAGACCATGATCAAGATGAGAGAAGAAGAAGAAGGGTTTCATCAGATCCACCTGTTCAGCTTAATCTGTTGCCTTCTGCCCCAGTTCCTCGAAGCCATGCTTCTTCACAGCTTCGCTTCCCCTGGCTCACTGATAATCTGGCAGTGTCTGAACCGGCCGGTTCATCAGACGGACCGGGAAGAGGGTTGGATGTGAACCGGATGCCGGGGATGGTAGCTGCGGCGGAGGAGGCAGAAGATGCGGCGGCACCTCTGTCATCTCCGAACAGTACAGTTTCATCGTTTCAGATGGACTTTGGAGTTGGAAATGGAGGAAGATCAAGTAAGAGAGATTTGGAGCTTGAAACTGACAGAGCGAGTTCCAGAGCGAGTGATGACGAGGACAACGGGTCGACTCGGAAGAAACTCAGGCTCTCTAAAGACCAATCGGCTTTTCTTGAAGAAAGCTTCAAAGAGCACAGCACTCTCAATCCTAAACAAAAACTTGCTCTGGCTAAACAGTTGAATCTTCGTCCACGCCAAGTGGAAGTGTGGTTTCAGAATCGAAGAGCAAGGACTAAATTGAAGCAGACAGAGGTAGATTGCGAATACTTAAAGAGATGCTGCGAAACACTGACAGATGAGAACAGAAGGTTACAAAAAGAGCTGCAAGAATTAAGAGCATTAAAAACTTCTCAACCTTTCTACATGCAGCTTCCTGCCACAACCCTCACCATGTGCCCCTCATGTGAGCGAGTGGTCACCACAGCCGCAGCCAACACAACCAACAACAACAACAACAACAGTTTAAAGTCTGCTCTAACCAAGCCAAGGTTACATCACCCTTTTGCTCAAGCCCAAGTCCACATGCAGCATCAGGTTCAAGCCAGCAAAGGAGCTGCTGCATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003700 GO:0006355 GO:0008150 GO:0009889 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0080090 GO:0140110 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

HALZ HD-ZIP_N Homeobox

Protein Analysis

347

Amino Acids

38.2

Weight (kDa)

8.69

Isoelectric Point (pI)

58.12

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007908)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G06710 AT5G06710 AT5G06710 AT5G06710
fragaria_vesca	FvH4_6g22050
malus_domestica	MD01G1069700.v1.1 MD12G1055800.v1.1 MD14G1056200.v1.1 MD14G1056300.v1.1
prunus_persica	Prupe.7G079300_v2.0.a1 Prupe.7G079300_v2.0.a1
pyrus_communis	pycom12g04870 pycom14g04600
rosa_chinensis	RchiOBHm_Chr3g0479361
rosa_laevigata	RLG00000023581
rosa_multiflora	Rmu_sc0006763.1_g000001 Rmu_sc0033237.1_g000001
rosa_roxburghii	Rroxscaffold_6G00402380
rosa_rugosa	Rorug03G0174600
rosa_samantha	Rh3AG225900 Rh3BG258600 Rh3CG254200 Rh3DG250000
rosa_wichuraiana	Rw3G020170

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	400
AccI	GTMKAC	1 cut(s)	545
AciI	CCGC	5 cut(s)	374, 377, 395, 398, 903
AclWI	GGATC	1 cut(s)	194
AcoI	YGGCCR	1 cut(s)	309
AdeI	CACNNNGTG	1 cut(s)	870
AfaI	GTAC	1 cut(s)	424
AfiI	CCNNNNNNNGG	5 cut(s)	67, 68, 335, 358, 963
AgsI	TTSAA	7 cut(s)	33, 497, 593, 604, 658, 718, 1016
AhdI	GACNNNNNGTC	1 cut(s)	541
AjnI	CCWGG	1 cut(s)	275
AjuI	GAANNNNNNNTTGG	2 cut(s)	570, 602
AluBI	AGCT	9 cut(s)	7, 214, 265, 371, 493, 600, 799, 847, 1031
AluI	AGCT	9 cut(s)	7, 214, 265, 371, 493, 600, 799, 847, 1031
Alw21I	GWGCWC	1 cut(s)	612
Alw26I	GTCTC	1 cut(s)	150
AlwI	GGATC	1 cut(s)	194
AlwNI	CAGNNNCTG	1 cut(s)	302
AoxI	GGCC	1 cut(s)	309
ApeKI	GCWGC	8 cut(s)	371, 756, 799, 844, 905, 1003, 1031, 1034
Asp700I	GAANNNNTTC	1 cut(s)	190
AspS9I	GGNCC	1 cut(s)	326
AsuC2I	CCSGG	2 cut(s)	330, 360
AsuHPI	GGTGA	4 cut(s)	35, 856, 886, 965
AvaII	GGWCC	1 cut(s)	326
BaeGI	GKGCMC	1 cut(s)	875
BanI	GGYRCC	1 cut(s)	400
Bbv12I	GWGCWC	1 cut(s)	612
BbvI	GCAGC	8 cut(s)	358, 743, 786, 856, 917, 1015, 1018, 1021
BccI	CCATC	3 cut(s)	61, 358, 436
BciT130I	CCWGG	1 cut(s)	277
BciVI	GTATCC	1 cut(s)	155
BclI	TGATCA	1 cut(s)	163
BcnI	CCSGG	2 cut(s)	330, 360
BcoDI	GTCTC	1 cut(s)	150
BfaI	CTAG	1 cut(s)	83
BfuI	GTATCC	1 cut(s)	155
BglII	AGATCT	1 cut(s)	79
Bme1390I	CCNGG	3 cut(s)	277, 330, 360
Bme18I	GGWCC	1 cut(s)	326
BmeRI	GACNNNNNGTC	1 cut(s)	541
BmgT120I	GGNCC	1 cut(s)	326
BmiI	GGNNCC	1 cut(s)	402
BmrFI	CCNGG	3 cut(s)	277, 330, 360
BmrI	ACTGGG	1 cut(s)	230
BmsI	GCATC	5 cut(s)	16, 345, 382, 743, 1015
BmuI	ACTGGG	1 cut(s)	230
BpuEI	CTTGAG	1 cut(s)	969
BpuMI	CCSGG	2 cut(s)	330, 360
BsaI	GGTCTC	1 cut(s)	150
BsaJI	CCNNGG	3 cut(s)	275, 359, 962
BsaWI	WCCGGW	1 cut(s)	351
Bsc4I	CCNNNNNNNGG	5 cut(s)	67, 68, 335, 358, 963
Bse118I	RCCGGY	2 cut(s)	307, 311
Bse1I	ACTGG	1 cut(s)	236
BseBI	CCWGG	1 cut(s)	277
BseDI	CCNNGG	3 cut(s)	275, 359, 962
BseGI	GGATG	3 cut(s)	349, 360, 369
BseLI	CCNNNNNNNGG	5 cut(s)	67, 68, 335, 358, 963
BseMII	CTCAG	2 cut(s)	5, 574
BseNI	ACTGG	1 cut(s)	236
BseRI	GAGGAG	1 cut(s)	395
BseSI	GKGCMC	1 cut(s)	875
BseX3I	CGGCCG	1 cut(s)	309
BseXI	GCAGC	8 cut(s)	358, 743, 786, 856, 917, 1015, 1018, 1021
Bsh1285I	CGRYCG	1 cut(s)	312
BshFI	GGCC	1 cut(s)	311
BshNI	GGYRCC	1 cut(s)	400
BsiEI	CGRYCG	1 cut(s)	312
BsiHKAI	GWGCWC	1 cut(s)	612
BsiSI	CCGG	5 cut(s)	308, 312, 329, 352, 359
BslI	CCNNNNNNNGG	5 cut(s)	67, 68, 335, 358, 963
BsmAI	GTCTC	1 cut(s)	150
BsnI	GGCC	1 cut(s)	311
Bso31I	GGTCTC	1 cut(s)	150
Bsp1286I	GDGCHC	2 cut(s)	612, 875
Bsp143I	GATC	5 cut(s)	79, 122, 163, 199, 470
BspACI	CCGC	5 cut(s)	374, 377, 395, 398, 903
BspANI	GGCC	1 cut(s)	311
BspCNI	CTCAG	2 cut(s)	6, 573
BspLI	GGNNCC	1 cut(s)	402
BspPI	GGATC	1 cut(s)	194
BspQI	GCTCTTC	1 cut(s)	694
BspT107I	GGYRCC	1 cut(s)	400
BspTNI	GGTCTC	1 cut(s)	150
BsrFI	RCCGGY	2 cut(s)	307, 311
BsrI	ACTGG	1 cut(s)	236
BssAI	RCCGGY	2 cut(s)	307, 311
BssECI	CCNNGG	3 cut(s)	275, 359, 962
BssMI	GATC	5 cut(s)	79, 122, 163, 199, 470
BssT1I	CCWWGG	1 cut(s)	962
Bst2UI	CCWGG	1 cut(s)	277
Bst4CI	ACNGT	4 cut(s)	422, 427, 654, 938
Bst6I	CTCTTC	2 cut(s)	328, 694
BstAPI	GCANNNNNTGC	1 cut(s)	392
BstC8I	GCNNGC	2 cut(s)	9, 1021
BstDEI	CTNAG	2 cut(s)	14, 560
BstEII	GGTNACC	1 cut(s)	892
BstF5I	GGATG	3 cut(s)	349, 360, 369
BstKTI	GATC	5 cut(s)	82, 125, 166, 202, 473
BstMAI	GTCTC	1 cut(s)	150
BstMBI	GATC	5 cut(s)	79, 122, 163, 199, 470
BstMCI	CGRYCG	1 cut(s)	312
BstMWI	GCNNNNNNNGC	3 cut(s)	116, 383, 392
BstNI	CCWGG	1 cut(s)	277
BstNSI	RCATGY	2 cut(s)	844, 1003
BstPI	GGTNACC	1 cut(s)	892
BstSCI	CCNGG	3 cut(s)	275, 328, 358
BstSLI	GKGCMC	1 cut(s)	875
BstV1I	GCAGC	8 cut(s)	358, 743, 786, 856, 917, 1015, 1018, 1021
BstX2I	RGATCY	2 cut(s)	79, 199
BstYI	RGATCY	2 cut(s)	79, 199
BstZI	CGGCCG	1 cut(s)	309
BsuI	GTATCC	1 cut(s)	155
BsuRI	GGCC	1 cut(s)	311
BtsCI	GGATG	3 cut(s)	349, 360, 369
BtsI	GCAGTG	1 cut(s)	303
BtsIMutI	CAGTG	4 cut(s)	121, 282, 303, 764
Cac8I	GCNNGC	2 cut(s)	9, 1021
CaiI	CAGNNNCTG	1 cut(s)	302
Cfr10I	RCCGGY	2 cut(s)	307, 311
Cfr13I	GGNCC	1 cut(s)	326
CpoI	CGGWCCG	1 cut(s)	326
Csp6I	GTAC	1 cut(s)	423
CspI	CGGWCCG	1 cut(s)	326
CviAII	CATG	9 cut(s)	94, 149, 161, 251, 841, 868, 879, 1000, 1038
CviQI	GTAC	1 cut(s)	423
DdeI	CTNAG	2 cut(s)	14, 560
DpnI	GATC	5 cut(s)	81, 124, 165, 201, 472
DpnII	GATC	5 cut(s)	79, 122, 163, 199, 470
DraI	TTTAAA	1 cut(s)	942
DraIII	CACNNNGTG	1 cut(s)	870
DriI	GACNNNNNGTC	1 cut(s)	541
EaeI	YGGCCR	1 cut(s)	309
EagI	CGGCCG	1 cut(s)	309
Eam1104I	CTCTTC	2 cut(s)	328, 694
Eam1105I	GACNNNNNGTC	1 cut(s)	541
EarI	CTCTTC	2 cut(s)	328, 694
EciI	GGCGGA	1 cut(s)	392
EclXI	CGGCCG	1 cut(s)	309
Eco130I	CCWWGG	1 cut(s)	962
Eco31I	GGTCTC	1 cut(s)	150
Eco47I	GGWCC	1 cut(s)	326
Eco52I	CGGCCG	1 cut(s)	309
Eco91I	GGTNACC	1 cut(s)	892
EcoO65I	GGTNACC	1 cut(s)	892
EcoRII	CCWGG	1 cut(s)	275
EcoT14I	CCWWGG	1 cut(s)	962
ErhI	CCWWGG	1 cut(s)	962
FaeI	CATG	9 cut(s)	97, 152, 164, 254, 844, 871, 882, 1003, 1041
FaiI	YATR	9 cut(s)	95, 150, 162, 252, 842, 869, 880, 1001, 1039
FalI	AAGNNNNNCTT	2 cut(s)	238, 270
FatI	CATG	9 cut(s)	93, 148, 160, 250, 840, 867, 878, 999, 1037
FbaI	TGATCA	1 cut(s)	163
FblI	GTMKAC	1 cut(s)	545
FokI	GGATG	3 cut(s)	356, 367, 376
FspBI	CTAG	1 cut(s)	83
HaeIII	GGCC	1 cut(s)	311
HapII	CCGG	5 cut(s)	308, 312, 329, 352, 359
Hin1II	CATG	9 cut(s)	97, 152, 164, 254, 844, 871, 882, 1003, 1041
HincII	GTYRAC	1 cut(s)	546
HindII	GTYRAC	1 cut(s)	546
HindIII	AAGCTT	1 cut(s)	598
HinfI	GANTC	3 cut(s)	547, 658, 694
HpaII	CCGG	5 cut(s)	308, 312, 329, 352, 359
HphI	GGTGA	4 cut(s)	35, 856, 886, 965
Hpy166II	GTNNAC	4 cut(s)	349, 546, 668, 997
Hpy188I	TCNGA	9 cut(s)	15, 127, 199, 304, 322, 417, 441, 552, 693
Hpy188III	TCNNGA	3 cut(s)	167, 516, 590
Hpy8I	GTNNAC	4 cut(s)	349, 546, 668, 997
HpyAV	CCTTC	4 cut(s)	146, 180, 237, 777
HpyCH4III	ACNGT	4 cut(s)	422, 427, 654, 938
HpyCH4V	TGCA	6 cut(s)	93, 119, 802, 844, 1003, 1037
HpyF10VI	GCNNNNNNNGC	3 cut(s)	116, 383, 392
HpyF3I	CTNAG	2 cut(s)	14, 560
Hsp92II	CATG	9 cut(s)	97, 152, 164, 254, 844, 871, 882, 1003, 1041
Ksp22I	TGATCA	1 cut(s)	163
Kzo9I	GATC	5 cut(s)	79, 122, 163, 199, 470
LguI	GCTCTTC	1 cut(s)	694
LmnI	GCTCC	3 cut(s)	4, 490, 1028
Lsp1109I	GCAGC	8 cut(s)	358, 743, 786, 856, 917, 1015, 1018, 1021
LweI	GCATC	5 cut(s)	16, 345, 382, 743, 1015
MaeI	CTAG	1 cut(s)	83
MaeIII	GTNAC	3 cut(s)	786, 892, 966
MalI	GATC	5 cut(s)	81, 124, 165, 201, 472
MboI	GATC	5 cut(s)	79, 122, 163, 199, 470
MflI	RGATCY	2 cut(s)	79, 199
MhlI	GDGCHC	2 cut(s)	612, 875
MluCI	AATT	2 cut(s)	713, 806
MlyI	GAGTC	1 cut(s)	541
MmeI	TCCRAC	2 cut(s)	321, 436
MroXI	GAANNNNTTC	1 cut(s)	190
MseI	TTAA	5 cut(s)	216, 746, 809, 818, 941
MspI	CCGG	5 cut(s)	308, 312, 329, 352, 359
MspR9I	CCNGG	3 cut(s)	277, 330, 360
MvaI	CCWGG	1 cut(s)	277
MwoI	GCNNNNNNNGC	3 cut(s)	116, 383, 392
NciI	CCSGG	2 cut(s)	330, 360
NdeII	GATC	5 cut(s)	79, 122, 163, 199, 470
NlaIII	CATG	9 cut(s)	97, 152, 164, 254, 844, 871, 882, 1003, 1041
NlaIV	GGNNCC	1 cut(s)	402
NmuCI	GTSAC	1 cut(s)	892
NspI	RCATGY	2 cut(s)	844, 1003
PciSI	GCTCTTC	1 cut(s)	694
PdmI	GAANNNNTTC	1 cut(s)	190
PfeI	GAWTC	2 cut(s)	658, 694
PleI	GAGTC	1 cut(s)	541
PpsI	GAGTC	1 cut(s)	541
Psp6I	CCWGG	1 cut(s)	275
PspEI	GGTNACC	1 cut(s)	892
PspGI	CCWGG	1 cut(s)	275
PspN4I	GGNNCC	1 cut(s)	402
PspPI	GGNCC	1 cut(s)	326
PstNI	CAGNNNCTG	1 cut(s)	302
PsuI	RGATCY	2 cut(s)	79, 199
RsaI	GTAC	1 cut(s)	424
RsaNI	GTAC	1 cut(s)	423
Rsr2I	CGGWCCG	1 cut(s)	326
RsrII	CGGWCCG	1 cut(s)	326
SalI	GTCGAC	1 cut(s)	544
SapI	GCTCTTC	1 cut(s)	694
SaqAI	TTAA	5 cut(s)	216, 746, 809, 818, 941
Sau3AI	GATC	5 cut(s)	79, 122, 163, 199, 470
Sau96I	GGNCC	1 cut(s)	326
SchI	GAGTC	1 cut(s)	541
ScrFI	CCNGG	3 cut(s)	277, 330, 360
SduI	GDGCHC	2 cut(s)	612, 875
SfaNI	GCATC	5 cut(s)	16, 345, 382, 743, 1015
SinI	GGWCC	1 cut(s)	326
SmlI	CTYRAG	1 cut(s)	984
SmoI	CTYRAG	1 cut(s)	984
Sse9I	AATT	2 cut(s)	713, 806
SsiI	CCGC	5 cut(s)	374, 377, 395, 398, 903
SspMI	CTAG	1 cut(s)	83
StyD4I	CCNGG	3 cut(s)	275, 328, 358
StyI	CCWWGG	1 cut(s)	962
TaaI	ACNGT	4 cut(s)	422, 427, 654, 938
TaqI	TCGA	3 cut(s)	244, 545, 697
TasI	AATT	2 cut(s)	713, 806
TatI	WGTACW	1 cut(s)	422
TauI	GCSGC	4 cut(s)	377, 398, 401, 905
TfiI	GAWTC	2 cut(s)	658, 694
Tru1I	TTAA	5 cut(s)	216, 746, 809, 818, 941
Tru9I	TTAA	5 cut(s)	216, 746, 809, 818, 941
TscAI	CASTG	4 cut(s)	121, 289, 303, 771
TseFI	GTSAC	1 cut(s)	892
TseI	GCWGC	8 cut(s)	371, 756, 799, 844, 905, 1003, 1031, 1034
Tsp45I	GTSAC	1 cut(s)	892
TspDTI	ATGAA	4 cut(s)	165, 183, 306, 420
TspGWI	ACGGA	1 cut(s)	339
TspRI	CASTG	4 cut(s)	121, 289, 303, 771
VpaK11BI	GGWCC	1 cut(s)	326
XceI	RCATGY	2 cut(s)	844, 1003
XmiI	GTMKAC	1 cut(s)	545
XmnI	GAANNNNTTC	1 cut(s)	190
XspI	CTAG	1 cut(s)	83

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.