Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr12

Orthogroup ID

OG0007908

Physical Location & Seq

Genomic Coordinates Reverse (-)

4808734 .. 4811372

Gene Structure 2639 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom12g04870.3

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1035 bp

ATGGAGCTAGCTCTGAGCTTAGGGGATGCTTCAAAGCCGTTTCTCTTTCTTGACAAAGCTCCAAAGATGGGCGGCAACATGGATATAGGGTTTTGCATGGGCTTGGGGACTGCTGCTTTCAGTGCTGCACGATCGGATGAGAGTAGCAGAAAGAGCACCTATGAAGTTTATGATCAGGAGGAGAGAAGAAGTAGGATTTCATCAGATCCACCTCTTCAGCTTAATCTCTTGCCTTCTGCTCCAGTTCCTCGTAGCCACGTTTCTTCTCAGCTTCGCTTCCCATGGCTTACTGATAATCTGGCTGTGTCTGAACCGGCCGGTTCATCAGATGGACCGGGAATAGGGTTAGATGTGAACCGGATGCCGGGAGTGTTGGCCTCGGCTGAGGAGGCCGAAGATGCGGCGGCTCCGCTGTCATCTCCGAACAGCACGGTTTCATCGTTTCAGATGGATTTTGGAATGAGAAATGGAGGAAGATCGAGCAAGAGAGATTTGGATGTTGACGCCGACAGAGCGAGTGATGACGAGGAGAACGGGTCAACTCGGAAGAAACTCAGGCTCTCTAAAGATCAATCGGCTTTTCTTGAAGAGAGCTTCAAAGAGCACAGCACTCTCAATCCTAAGCAAAAACTTGCTCTGGCTAAACAGTTGAATCTTCGTCCACGGCAAGTGGAAGTGTGGTTTCAGAATCGAAGAGCAAGGACAAAGTTGAAGCAGACAGAAGTAGATTGTGAGTACTTAAAGAGATGCTGTGAAACACTGACAGAAGAGAATAGGAGGTTACAGAAGGAACTGCAAGACTTGAGAGCTTTGAAGACCTCTCAGCCTTTCTACATGCAGCTGCCTGCCACCACACTCACCATGTGCCCCTCATGTGAACGCGTGGTCACCACCGCCTCAGCCAACACCTCCACCACCACCACCACCAACCACCACCACCACATAAAGTCTGCTCTGAACAACAACAAGCCAAGGTTAAATCCATTTACTGCTGCTCAAGTCCACATACAGCAGCATCAAGGTGCTGCTGCATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003700 GO:0006355 GO:0008150 GO:0009889 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0080090 GO:0140110 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

HALZ HD-ZIP_N Homeobox

Protein Analysis

345

Amino Acids

38.05

Weight (kDa)

8.17

Isoelectric Point (pI)

61.43

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007908)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G06710 AT5G06710 AT5G06710 AT5G06710
fragaria_vesca	FvH4_6g22050
malus_domestica	MD01G1069700.v1.1 MD12G1055800.v1.1 MD14G1056200.v1.1 MD14G1056300.v1.1
prunus_persica	Prupe.7G079300_v2.0.a1 Prupe.7G079300_v2.0.a1
pyrus_communis	pycom12g04870 pycom14g04600
rosa_chinensis	RchiOBHm_Chr3g0479361
rosa_laevigata	RLG00000023581
rosa_multiflora	Rmu_sc0006763.1_g000001 Rmu_sc0033237.1_g000001
rosa_roxburghii	Rroxscaffold_6G00402380
rosa_rugosa	Rorug03G0174600
rosa_samantha	Rh3AG225900 Rh3BG258600 Rh3CG254200 Rh3DG250000
rosa_wichuraiana	Rw3G020170

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	882
AciI	CCGC	5 cut(s)	72, 401, 404, 410, 894
AclWI	GGATC	1 cut(s)	200
AcoI	YGGCCR	1 cut(s)	315
AcuI	CTGAAG	1 cut(s)	200
AcyI	GRCGYC	1 cut(s)	504
AdeI	CACNNNGTG	1 cut(s)	864
AfaI	GTAC	1 cut(s)	737
AfiI	CCNNNNNNNGG	3 cut(s)	68, 341, 364
AflIII	ACRYGT	1 cut(s)	880
AgsI	TTSAA	6 cut(s)	33, 587, 598, 652, 712, 814
AluBI	AGCT	9 cut(s)	7, 11, 18, 59, 220, 271, 594, 809, 841
AluI	AGCT	9 cut(s)	7, 11, 18, 59, 220, 271, 594, 809, 841
Alw21I	GWGCWC	2 cut(s)	158, 606
AlwI	GGATC	1 cut(s)	200
AoxI	GGCC	3 cut(s)	315, 375, 390
ApeKI	GCWGC	8 cut(s)	113, 125, 838, 841, 992, 1012, 1025, 1028
AspS9I	GGNCC	1 cut(s)	332
AsuC2I	CCSGG	2 cut(s)	336, 366
AsuHPI	GGTGA	2 cut(s)	850, 880
AsuNHI	GCTAGC	1 cut(s)	7
AvaII	GGWCC	1 cut(s)	332
BaeGI	GKGCMC	1 cut(s)	869
BbsI	GAAGAC	1 cut(s)	821
Bbv12I	GWGCWC	2 cut(s)	158, 606
BbvCI	CCTCAGC	2 cut(s)	384, 898
BbvI	GCAGC	8 cut(s)	100, 112, 828, 850, 979, 1012, 1015, 1024
BccI	CCATC	3 cut(s)	61, 323, 442
BceAI	ACGGC	2 cut(s)	22, 680
BclI	TGATCA	1 cut(s)	172
BcnI	CCSGG	2 cut(s)	336, 366
BfaI	CTAG	1 cut(s)	8
BmcAI	AGTACT	1 cut(s)	737
Bme1390I	CCNGG	2 cut(s)	336, 366
Bme18I	GGWCC	1 cut(s)	332
BmgT120I	GGNCC	1 cut(s)	332
BmiI	GGNNCC	1 cut(s)	408
BmrFI	CCNGG	2 cut(s)	336, 366
BmsI	GCATC	5 cut(s)	16, 351, 388, 737, 1024
BmtI	GCTAGC	1 cut(s)	11
BpiI	GAAGAC	1 cut(s)	821
BpmI	CTGGAG	1 cut(s)	225
Bpu10I	CCTNAGC	4 cut(s)	19, 384, 621, 898
BpuEI	CTTGAG	2 cut(s)	823, 981
BpuMI	CCSGG	2 cut(s)	336, 366
BsaHI	GRCGYC	1 cut(s)	504
BsaJI	CCNNGG	4 cut(s)	281, 378, 662, 971
BsaWI	WCCGGW	1 cut(s)	357
BsaXI	ACNNNNNCTCC	2 cut(s)	521, 551
Bsc4I	CCNNNNNNNGG	3 cut(s)	68, 341, 364
Bse118I	RCCGGY	2 cut(s)	313, 317
Bse1I	ACTGG	1 cut(s)	242
BseDI	CCNNGG	4 cut(s)	281, 378, 662, 971
BseGI	GGATG	4 cut(s)	31, 142, 366, 502
BseLI	CCNNNNNNNGG	3 cut(s)	68, 341, 364
BseMII	CTCAG	6 cut(s)	5, 281, 375, 568, 836, 912
BseNI	ACTGG	1 cut(s)	242
BseRI	GAGGAG	3 cut(s)	194, 401, 542
BseSI	GKGCMC	1 cut(s)	869
BseX3I	CGGCCG	1 cut(s)	315
BseXI	GCAGC	8 cut(s)	100, 112, 828, 850, 979, 1012, 1015, 1024
BsgI	GTGCAG	1 cut(s)	111
Bsh1236I	CGCG	1 cut(s)	882
Bsh1285I	CGRYCG	2 cut(s)	134, 318
BshFI	GGCC	3 cut(s)	317, 377, 392
BsiEI	CGRYCG	2 cut(s)	134, 318
BsiHKAI	GWGCWC	2 cut(s)	158, 606
BsiSI	CCGG	5 cut(s)	314, 318, 335, 358, 365
BslFI	GGGAC	1 cut(s)	121
BslI	CCNNNNNNNGG	3 cut(s)	68, 341, 364
BsmFI	GGGAC	1 cut(s)	121
BsnI	GGCC	3 cut(s)	317, 377, 392
Bsp1286I	GDGCHC	3 cut(s)	158, 606, 869
Bsp143I	GATC	5 cut(s)	131, 172, 205, 476, 568
Bsp19I	CCATGG	1 cut(s)	281
BspACI	CCGC	5 cut(s)	72, 401, 404, 410, 894
BspANI	GGCC	3 cut(s)	317, 377, 392
BspCNI	CTCAG	6 cut(s)	6, 280, 376, 567, 835, 911
BspFNI	CGCG	1 cut(s)	882
BspLI	GGNNCC	1 cut(s)	408
BspOI	GCTAGC	1 cut(s)	11
BspPI	GGATC	1 cut(s)	200
BspQI	GCTCTTC	1 cut(s)	688
BsrFI	RCCGGY	2 cut(s)	313, 317
BsrI	ACTGG	1 cut(s)	242
BssAI	RCCGGY	2 cut(s)	313, 317
BssECI	CCNNGG	4 cut(s)	281, 378, 662, 971
BssMI	GATC	5 cut(s)	131, 172, 205, 476, 568
BssNI	GRCGYC	1 cut(s)	504
BssT1I	CCWWGG	2 cut(s)	281, 971
Bst4CI	ACNGT	2 cut(s)	433, 648
Bst6I	CTCTTC	4 cut(s)	219, 582, 688, 762
BstACI	GRCGYC	1 cut(s)	504
BstC8I	GCNNGC	2 cut(s)	9, 846
BstDEI	CTNAG	8 cut(s)	14, 19, 267, 384, 554, 621, 822, 898
BstDSI	CCRYGG	2 cut(s)	281, 662
BstEII	GGTNACC	1 cut(s)	886
BstF5I	GGATG	4 cut(s)	31, 142, 366, 502
BstFNI	CGCG	1 cut(s)	882
BstKTI	GATC	5 cut(s)	134, 175, 208, 479, 571
BstMBI	GATC	5 cut(s)	131, 172, 205, 476, 568
BstMCI	CGRYCG	2 cut(s)	134, 318
BstMWI	GCNNNNNNNGC	5 cut(s)	122, 153, 389, 398, 512
BstNSI	RCATGY	1 cut(s)	838
BstPI	GGTNACC	1 cut(s)	886
BstSCI	CCNGG	2 cut(s)	334, 364
BstSLI	GKGCMC	1 cut(s)	869
BstUI	CGCG	1 cut(s)	882
BstV1I	GCAGC	8 cut(s)	100, 112, 828, 850, 979, 1012, 1015, 1024
BstV2I	GAAGAC	1 cut(s)	821
BstX2I	RGATCY	1 cut(s)	205
BstYI	RGATCY	1 cut(s)	205
BstZI	CGGCCG	1 cut(s)	315
BsuRI	GGCC	3 cut(s)	317, 377, 392
BtgI	CCRYGG	2 cut(s)	281, 662
BtsCI	GGATG	4 cut(s)	31, 142, 366, 502
BtsIMutI	CAGTG	2 cut(s)	127, 758
Cac8I	GCNNGC	2 cut(s)	9, 846
Cfr10I	RCCGGY	2 cut(s)	313, 317
Cfr13I	GGNCC	1 cut(s)	332
CseI	GACGC	1 cut(s)	512
Csp6I	GTAC	1 cut(s)	736
CviAII	CATG	7 cut(s)	79, 97, 282, 835, 862, 873, 1032
CviQI	GTAC	1 cut(s)	736
DdeI	CTNAG	8 cut(s)	14, 19, 267, 384, 554, 621, 822, 898
DpnI	GATC	5 cut(s)	133, 174, 207, 478, 570
DpnII	GATC	5 cut(s)	131, 172, 205, 476, 568
DraIII	CACNNNGTG	1 cut(s)	864
EaeI	YGGCCR	1 cut(s)	315
EagI	CGGCCG	1 cut(s)	315
Eam1104I	CTCTTC	4 cut(s)	219, 582, 688, 762
EarI	CTCTTC	4 cut(s)	219, 582, 688, 762
EclXI	CGGCCG	1 cut(s)	315
Eco130I	CCWWGG	2 cut(s)	281, 971
Eco47I	GGWCC	1 cut(s)	332
Eco52I	CGGCCG	1 cut(s)	315
Eco57I	CTGAAG	1 cut(s)	200
Eco91I	GGTNACC	1 cut(s)	886
EcoO65I	GGTNACC	1 cut(s)	886
EcoT14I	CCWWGG	2 cut(s)	281, 971
ErhI	CCWWGG	2 cut(s)	281, 971
FaeI	CATG	7 cut(s)	82, 100, 285, 838, 865, 876, 1035
FaqI	GGGAC	1 cut(s)	121
FatI	CATG	7 cut(s)	78, 96, 281, 834, 861, 872, 1031
FbaI	TGATCA	1 cut(s)	172
FokI	GGATG	4 cut(s)	38, 149, 373, 509
FspBI	CTAG	1 cut(s)	8
GsuI	CTGGAG	1 cut(s)	225
HaeIII	GGCC	3 cut(s)	317, 377, 392
HapII	CCGG	5 cut(s)	314, 318, 335, 358, 365
HgaI	GACGC	1 cut(s)	512
Hin1I	GRCGYC	1 cut(s)	504
Hin1II	CATG	7 cut(s)	82, 100, 285, 838, 865, 876, 1035
HincII	GTYRAC	2 cut(s)	502, 540
HindII	GTYRAC	2 cut(s)	502, 540
HinfI	GANTC	2 cut(s)	652, 688
HpaII	CCGG	5 cut(s)	314, 318, 335, 358, 365
HphI	GGTGA	2 cut(s)	850, 880
Hpy166II	GTNNAC	6 cut(s)	355, 502, 540, 662, 878, 1003
Hpy188III	TCNNGA	3 cut(s)	50, 176, 584
Hpy8I	GTNNAC	6 cut(s)	355, 502, 540, 662, 878, 1003
HpyAV	CCTTC	2 cut(s)	243, 781
HpyCH4III	ACNGT	2 cut(s)	433, 648
HpyCH4IV	ACGT	1 cut(s)	258
HpyCH4V	TGCA	5 cut(s)	96, 128, 796, 838, 1031
HpyF10VI	GCNNNNNNNGC	5 cut(s)	122, 153, 389, 398, 512
HpyF3I	CTNAG	8 cut(s)	14, 19, 267, 384, 554, 621, 822, 898
HpySE526I	ACGT	1 cut(s)	258
Hsp92I	GRCGYC	1 cut(s)	504
Hsp92II	CATG	7 cut(s)	82, 100, 285, 838, 865, 876, 1035
Ksp22I	TGATCA	1 cut(s)	172
Kzo9I	GATC	5 cut(s)	131, 172, 205, 476, 568
LguI	GCTCTTC	1 cut(s)	688
LmnI	GCTCC	4 cut(s)	4, 64, 244, 412
Lsp1109I	GCAGC	8 cut(s)	100, 112, 828, 850, 979, 1012, 1015, 1024
LweI	GCATC	5 cut(s)	16, 351, 388, 737, 1024
MaeI	CTAG	1 cut(s)	8
MaeII	ACGT	1 cut(s)	258
MaeIII	GTNAC	2 cut(s)	780, 886
MalI	GATC	5 cut(s)	133, 174, 207, 478, 570
MboI	GATC	5 cut(s)	131, 172, 205, 476, 568
MflI	RGATCY	1 cut(s)	205
MhlI	GDGCHC	3 cut(s)	158, 606, 869
MluI	ACGCGT	1 cut(s)	880
MseI	TTAA	3 cut(s)	222, 740, 977
MslI	CAYNNNNRTG	1 cut(s)	1020
MspA1I	CMGCKG	2 cut(s)	412, 841
MspI	CCGG	5 cut(s)	314, 318, 335, 358, 365
MspR9I	CCNGG	2 cut(s)	336, 366
MvnI	CGCG	1 cut(s)	882
MwoI	GCNNNNNNNGC	5 cut(s)	122, 153, 389, 398, 512
NciI	CCSGG	2 cut(s)	336, 366
NcoI	CCATGG	1 cut(s)	281
NdeII	GATC	5 cut(s)	131, 172, 205, 476, 568
NheI	GCTAGC	1 cut(s)	7
NlaIII	CATG	7 cut(s)	82, 100, 285, 838, 865, 876, 1035
NlaIV	GGNNCC	1 cut(s)	408
NmeAIII	GCCGAG	1 cut(s)	359
NmuCI	GTSAC	1 cut(s)	886
NspI	RCATGY	1 cut(s)	838
PciSI	GCTCTTC	1 cut(s)	688
PcsI	WCGNNNNNNNCGW	1 cut(s)	437
PfeI	GAWTC	2 cut(s)	652, 688
Ple19I	CGATCG	1 cut(s)	134
PspEI	GGTNACC	1 cut(s)	886
PspN4I	GGNNCC	1 cut(s)	408
PspPI	GGNCC	1 cut(s)	332
PsuI	RGATCY	1 cut(s)	205
PvuI	CGATCG	1 cut(s)	134
PvuII	CAGCTG	1 cut(s)	841
RsaI	GTAC	1 cut(s)	737
RsaNI	GTAC	1 cut(s)	736
RseI	CAYNNNNRTG	1 cut(s)	1020
SapI	GCTCTTC	1 cut(s)	688
SaqAI	TTAA	3 cut(s)	222, 740, 977
Sau3AI	GATC	5 cut(s)	131, 172, 205, 476, 568
Sau96I	GGNCC	1 cut(s)	332
ScaI	AGTACT	1 cut(s)	737
ScrFI	CCNGG	2 cut(s)	336, 366
SduI	GDGCHC	3 cut(s)	158, 606, 869
SfaNI	GCATC	5 cut(s)	16, 351, 388, 737, 1024
SinI	GGWCC	1 cut(s)	332
SmiMI	CAYNNNNRTG	1 cut(s)	1020
SmlI	CTYRAG	2 cut(s)	802, 996
SmoI	CTYRAG	2 cut(s)	802, 996
SsiI	CCGC	5 cut(s)	72, 401, 404, 410, 894
SspMI	CTAG	1 cut(s)	8
StyD4I	CCNGG	2 cut(s)	334, 364
StyI	CCWWGG	2 cut(s)	281, 971
TaaI	ACNGT	2 cut(s)	433, 648
TaiI	ACGT	1 cut(s)	261
TaqI	TCGA	2 cut(s)	479, 691
TatI	WGTACW	1 cut(s)	735
TauI	GCSGC	3 cut(s)	75, 404, 407
TfiI	GAWTC	2 cut(s)	652, 688
Tru1I	TTAA	3 cut(s)	222, 740, 977
Tru9I	TTAA	3 cut(s)	222, 740, 977
TscAI	CASTG	2 cut(s)	127, 765
TseFI	GTSAC	1 cut(s)	886
TseI	GCWGC	8 cut(s)	113, 125, 838, 841, 992, 1012, 1025, 1028
Tsp45I	GTSAC	1 cut(s)	886
TspDTI	ATGAA	4 cut(s)	177, 189, 312, 426
TspRI	CASTG	2 cut(s)	127, 765
VpaK11BI	GGWCC	1 cut(s)	332
XceI	RCATGY	1 cut(s)	838
XspI	CTAG	1 cut(s)	8
ZrmI	AGTACT	1 cut(s)	737

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.